IVF0022331 (gene) Melon (IVF77) v1

Overview
NameIVF0022331
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr01: 18569367 .. 18569656 (-)
RNA-Seq ExpressionIVF0022331
SyntenyIVF0022331
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACATGTCGCTTGAAAACATGACGAGTGCACGACCTAGTAGGTCAAGCGACACCAAGAGGGGTTTCGCGAGTCGAAGAGGAAACACAACATGCAAAATTTTGAGATTTTTGAGCCCATTCGCGATGCCATGGACCGCACGAATGACCAGTTGAGGGTCATTGCGAATTGGCCAGATAGAGCTAGCCAGAAGGAAGACGCTTTGGTACAGGAAGTCATTACGCAGGTGCAGTCCATTCCTCAACTCAGTGTAGAGGATAGTGCAAAATGTATGATGGTAATGGCATAG

mRNA sequence

ATGAACATGTCGCTTGAAAACATGACGAGTGCACGACCTAGTAGGTCAAGCGACACCAAGAGGGGTTTCATTTTTGAGCCCATTCGCGATGCCATGGACCGCACGAATGACCAGTTGAGGGTCATTGCGAATTGGCCAGATAGAGCTAGCCAGAAGGAAGACGCTTTGGTACAGGAAGTCATTACGCAGGTGCAGTCCATTCCTCAACTCAGTGTAGAGGATAGTGCAAAATGTATGATGGTAATGGCATAG

Coding sequence (CDS)

ATGAACATGTCGCTTGAAAACATGACGAGTGCACGACCTAGTAGGTCAAGCGACACCAAGAGGGGTTTCATTTTTGAGCCCATTCGCGATGCCATGGACCGCACGAATGACCAGTTGAGGGTCATTGCGAATTGGCCAGATAGAGCTAGCCAGAAGGAAGACGCTTTGGTACAGGAAGTCATTACGCAGGTGCAGTCCATTCCTCAACTCAGTGTAGAGGATAGTGCAAAATGTATGATGGTAATGGCATAG

Protein sequence

MNMSLENMTSARPSRSSDTKRGFIFEPIRDAMDRTNDQLRVIANWPDRASQKEDALVQEVITQVQSIPQLSVEDSAKCMMVMA
Homology
BLAST of IVF0022331 vs. ExPASy TrEMBL
Match: A0A5A7U761 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00710 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 5.1e-22
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 24 IFEPIRDAMDRTNDQLRVIANWPDRASQKEDALVQEVITQVQSIPQLSVEDSAKCMM 81
          IFEPIRDAMDRTNDQLRVIANWPDRASQKEDALVQEVITQVQSIPQLSVEDSAKCMM
Sbjct: 6  IFEPIRDAMDRTNDQLRVIANWPDRASQKEDALVQEVITQVQSIPQLSVEDSAKCMM 62

BLAST of IVF0022331 vs. ExPASy TrEMBL
Match: A0A5A7T4S2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G001800 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.1e-11
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 0

Query: 25 FEPIRDAMDRTNDQLRVIANWPDRASQKEDALVQEVITQVQSIPQLSVEDSAKCMMVM 83
          F  IR+AMD  NDQL+VIANWP+RASQKED L +EVI Q+QS PQ  VE S KCMMV+
Sbjct: 7  FMLIRNAMDCVNDQLKVIANWPERASQKEDTLQREVIMQLQSNPQFCVEGSVKCMMVV 64

BLAST of IVF0022331 vs. ExPASy TrEMBL
Match: A0A5D3CM76 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00400 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 6.9e-11
Identity = 44/95 (46.32%), Postives = 61/95 (64.21%), Query Frame = 0

Query: 1   MNMSLENMTSAR-------PSRSSDTKRGFIFEPI------RDAMDRTNDQLRVIANWPD 60
           MNMS  +M ++R        S S+  KR    +P       RDAMD  NDQ+R+IA WPD
Sbjct: 26  MNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRIIAKWPD 85

Query: 61  RASQKEDALVQEVITQVQSIPQLSVEDSAKCMMVM 83
           RA  +EDA+V+EVIT ++ IP LS+ED +KC+M++
Sbjct: 86  RAIHREDAMVREVITHIEFIPGLSMEDISKCVMIV 120

BLAST of IVF0022331 vs. ExPASy TrEMBL
Match: A0A5A7UMN4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G001920 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 9.4e-08
Identity = 43/95 (45.26%), Postives = 56/95 (58.95%), Query Frame = 0

Query: 1   MNMSLENMTSARPSRSSDTK----------RGFIF---EPIRDAMDRTNDQLRVIANWPD 60
           MN+S E+M  ARP R +D +          RG+       I +A+D TND LR IA W  
Sbjct: 41  MNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTNDLLRAIAEWLK 100

Query: 61  RASQKEDALVQEVITQVQSIPQLSVEDSAKCMMVM 83
               +EDA+ +EVI Q+Q IPQLSV DS +CMM+M
Sbjct: 101 ITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLM 135

BLAST of IVF0022331 vs. ExPASy TrEMBL
Match: A0A5D3CVP7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1706G00270 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.9e-07
Identity = 39/96 (40.62%), Postives = 54/96 (56.25%), Query Frame = 0

Query: 1   MNMSLENMTSARPSRSSDTKRGF-------------IFEPIRDAMDRTNDQLRVIANWPD 60
           +NMS E+M  A+P+RSSD + G                + IRD M   ND LR I +WP 
Sbjct: 19  LNMSSEDMMGAQPNRSSDCRSGSSGLKRKLEEQNVETVDVIRDTMKCVNDLLRAIVDWPK 78

Query: 61  RASQKEDALVQEVITQVQSIPQLSVEDSAKCMMVMA 84
            A Q+EDA  +EVI Q+Q IP+LS  D  + + ++A
Sbjct: 79  LARQEEDATRREVIRQLQDIPELSRLDRVRYLKIIA 114

BLAST of IVF0022331 vs. NCBI nr
Match: KAA0051128.1 (hypothetical protein E6C27_scaffold511G00750 [Cucumis melo var. makuwa] >TYJ96774.1 hypothetical protein E5676_scaffold986G00710 [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (280), Expect = 1.88e-30
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 24 IFEPIRDAMDRTNDQLRVIANWPDRASQKEDALVQEVITQVQSIPQLSVEDSAKCMM 80
          IFEPIRDAMDRTNDQLRVIANWPDRASQKEDALVQEVITQVQSIPQLSVEDSAKCMM
Sbjct: 6  IFEPIRDAMDRTNDQLRVIANWPDRASQKEDALVQEVITQVQSIPQLSVEDSAKCMM 62

BLAST of IVF0022331 vs. NCBI nr
Match: KAA0037993.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 8.18e-16
Identity = 40/57 (70.18%), Postives = 45/57 (78.95%), Query Frame = 0

Query: 25 FEPIRDAMDRTNDQLRVIANWPDRASQKEDALVQEVITQVQSIPQLSVEDSAKCMMV 81
          F  IR+AMD  NDQL+VIANWP+RASQKED L +EVI Q+QS PQ  VE S KCMMV
Sbjct: 7  FMLIRNAMDCVNDQLKVIANWPERASQKEDTLQREVIMQLQSNPQFCVEGSVKCMMV 63

BLAST of IVF0022331 vs. NCBI nr
Match: KAA0051928.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK12234.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 2.11e-15
Identity = 44/94 (46.81%), Postives = 60/94 (63.83%), Query Frame = 0

Query: 1   MNMSLENMTSAR-------PSRSSDTKRGFIFEPI------RDAMDRTNDQLRVIANWPD 60
           MNMS  +M ++R        S S+  KR    +P       RDAMD  NDQ+R+IA WPD
Sbjct: 26  MNMSSNDMMASRFGQSNYARSSSNGQKRKRDMQPFETYDLNRDAMDAANDQIRIIAKWPD 85

Query: 61  RASQKEDALVQEVITQVQSIPQLSVEDSAKCMMV 81
           RA  +EDA+V+EVIT ++ IP LS+ED +KC+M+
Sbjct: 86  RAIHREDAMVREVITHIEFIPGLSMEDISKCVMI 119

BLAST of IVF0022331 vs. NCBI nr
Match: KAA0056454.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK29071.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 4.33e-11
Identity = 43/95 (45.26%), Postives = 56/95 (58.95%), Query Frame = 0

Query: 1   MNMSLENMTSARPSRSSDTK----------RGFIF---EPIRDAMDRTNDQLRVIANWPD 60
           MN+S E+M  ARP R +D +          RG+       I +A+D TND LR IA W  
Sbjct: 41  MNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTNDLLRAIAEWLK 100

Query: 61  RASQKEDALVQEVITQVQSIPQLSVEDSAKCMMVM 82
               +EDA+ +EVI Q+Q IPQLSV DS +CMM+M
Sbjct: 101 ITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLM 135

BLAST of IVF0022331 vs. NCBI nr
Match: TYK15318.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 3.31e-10
Identity = 39/96 (40.62%), Postives = 54/96 (56.25%), Query Frame = 0

Query: 1   MNMSLENMTSARPSRSSDTKRGF-------------IFEPIRDAMDRTNDQLRVIANWPD 60
           +NMS E+M  A+P+RSSD + G                + IRD M   ND LR I +WP 
Sbjct: 19  LNMSSEDMMGAQPNRSSDCRSGSSGLKRKLEEQNVETVDVIRDTMKCVNDLLRAIVDWPK 78

Query: 61  RASQKEDALVQEVITQVQSIPQLSVEDSAKCMMVMA 83
            A Q+EDA  +EVI Q+Q IP+LS  D  + + ++A
Sbjct: 79  LARQEEDATRREVIRQLQDIPELSRLDRVRYLKIIA 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U7615.1e-22100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T4S23.1e-1168.97Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CM766.9e-1146.32Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UMN49.4e-0845.26Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CVP77.9e-0740.63Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0051128.11.88e-30100.00hypothetical protein E6C27_scaffold511G00750 [Cucumis melo var. makuwa] >TYJ9677... [more]
KAA0037993.18.18e-1670.18retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0051928.12.11e-1546.81retrotransposon protein [Cucumis melo var. makuwa] >TYK12234.1 retrotransposon p... [more]
KAA0056454.14.33e-1145.26retrotransposon protein [Cucumis melo var. makuwa] >TYK29071.1 retrotransposon p... [more]
TYK15318.13.31e-1040.63retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0022331.1IVF0022331.1mRNA