IVF0021709 (gene) Melon (IVF77) v1

Overview
NameIVF0021709
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionATP synthase epsilon chain, chloroplastic
Locationchr05: 336448 .. 336642 (+)
RNA-Seq ExpressionIVF0021709
SyntenyIVF0021709
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAATGGATGGTTAACGATGGCTCTGATGGGTGGTTTTGCTAGAATAGGCAATAATGAAGTCACTATTTTAGTAAATGATGCGGAGAAGGCCAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTCGAAATAGTGGAAGCCAACTTGAGGAAAGCTCAGGGCAAGAGACAAACAATCGAGGCAAATTAG

mRNA sequence

ATGATGAATGGATGGTTAACGATGGCTCTGATGGGTGGTTTTGCTAGAATAGGCAATAATGAAGTCACTATTTTAGTAAATGATGCGGAGAAGGCCAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTCGAAATAGTGGAAGCCAACTTGAGGAAAGCTCAGGGCAAGAGACAAACAATCGAGGCAAATTAG

Coding sequence (CDS)

ATGATGAATGGATGGTTAACGATGGCTCTGATGGGTGGTTTTGCTAGAATAGGCAATAATGAAGTCACTATTTTAGTAAATGATGCGGAGAAGGCCAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTCGAAATAGTGGAAGCCAACTTGAGGAAAGCTCAGGGCAAGAGACAAACAATCGAGGCAAATTAG

Protein sequence

MMNGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQTIEAN
Homology
BLAST of IVF0021709 vs. ExPASy Swiss-Prot
Match: Q4VZG9 (ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus OX=3659 GN=atpE PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 5.7e-26
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0

Query: 3   NGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQTIE 62
           +GWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI EANLRKAQGKRQTIE
Sbjct: 57  DGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIE 116

Query: 63  AN 65
           AN
Sbjct: 117 AN 118

BLAST of IVF0021709 vs. ExPASy Swiss-Prot
Match: P09468 (ATP synthase epsilon chain, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=atpE PE=1 SV=2)

HSP 1 Score: 112.5 bits (280), Expect = 1.8e-24
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 0

Query: 1   MMNGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQT 60
           + N WLTMALMGGFARIGNNE+TILVNDAEK SDIDPQEAQQTLEI EANLRKA+GKRQT
Sbjct: 53  LANQWLTMALMGGFARIGNNEITILVNDAEKNSDIDPQEAQQTLEIAEANLRKAEGKRQT 112

Query: 61  IEAN 65
           IEAN
Sbjct: 113 IEAN 116

BLAST of IVF0021709 vs. ExPASy Swiss-Prot
Match: Q09MH2 (ATP synthase epsilon chain, chloroplastic OS=Citrus sinensis OX=2711 GN=atpE PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 9.0e-24
Identity = 55/60 (91.67%), Postives = 58/60 (96.67%), Query Frame = 0

Query: 5   WLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQTIEAN 64
           WLTMALMGGFARIGNNE+TILVNDAEK+SDIDPQEAQQTLEI EANLRKA+ KRQTIEAN
Sbjct: 57  WLTMALMGGFARIGNNEITILVNDAEKSSDIDPQEAQQTLEIAEANLRKAESKRQTIEAN 116

BLAST of IVF0021709 vs. ExPASy Swiss-Prot
Match: Q49KZ2 (ATP synthase epsilon chain, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=atpE PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 9.0e-24
Identity = 54/60 (90.00%), Postives = 58/60 (96.67%), Query Frame = 0

Query: 5   WLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQTIEAN 64
           WLTMALMGGFARIGNNE+TILVNDAEK SDIDPQEAQ+TLE+ EANLRKA+GKRQTIEAN
Sbjct: 57  WLTMALMGGFARIGNNEITILVNDAEKGSDIDPQEAQETLELAEANLRKAEGKRQTIEAN 116

BLAST of IVF0021709 vs. ExPASy Swiss-Prot
Match: A0ZZ41 (ATP synthase epsilon chain, chloroplastic OS=Gossypium barbadense OX=3634 GN=atpE PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 9.0e-24
Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 0

Query: 5   WLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQTIEAN 64
           WLTMALMGGFARIGNNE+TILVNDAEK SDIDPQEAQQ LEI EANLRKA+GKRQTIEAN
Sbjct: 57  WLTMALMGGFARIGNNEITILVNDAEKGSDIDPQEAQQALEIAEANLRKAEGKRQTIEAN 116

BLAST of IVF0021709 vs. ExPASy TrEMBL
Match: A0A5D3DDV0 (ATP synthase CF1 epsilon subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G00700 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.7e-25
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0

Query: 1  MMNGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQT 60
          MMNGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQT
Sbjct: 1  MMNGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQT 60

Query: 61 IEAN 65
          IEAN
Sbjct: 61 IEAN 64

BLAST of IVF0021709 vs. ExPASy TrEMBL
Match: A0A218KG49 (ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus var. hardwickii OX=319220 GN=atpE PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.1e-23
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0

Query: 3   NGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQTIE 62
           +GWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI EANLRKAQGKRQTIE
Sbjct: 57  DGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIE 116

Query: 63  AN 65
           AN
Sbjct: 117 AN 118

BLAST of IVF0021709 vs. ExPASy TrEMBL
Match: G3ETZ1 (ATP synthase epsilon chain, chloroplastic OS=Cucumis melo subsp. melo OX=412675 GN=atpE PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.1e-23
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0

Query: 3   NGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQTIE 62
           +GWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI EANLRKAQGKRQTIE
Sbjct: 57  DGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIE 116

Query: 63  AN 65
           AN
Sbjct: 117 AN 118

BLAST of IVF0021709 vs. ExPASy TrEMBL
Match: A0A1X9Q1L0 (ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus OX=3659 GN=atpE PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.1e-23
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0

Query: 3   NGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQTIE 62
           +GWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI EANLRKAQGKRQTIE
Sbjct: 57  DGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIE 116

Query: 63  AN 65
           AN
Sbjct: 117 AN 118

BLAST of IVF0021709 vs. ExPASy TrEMBL
Match: A0A249RZA2 (ATP synthase epsilon chain, chloroplastic OS=Cucumis melo var. cantalupensis OX=3658 GN=atpE PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.1e-23
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0

Query: 3   NGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQTIE 62
           +GWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI EANLRKAQGKRQTIE
Sbjct: 57  DGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIE 116

Query: 63  AN 65
           AN
Sbjct: 117 AN 118

BLAST of IVF0021709 vs. NCBI nr
Match: KAA0040079.1 (ATP synthase CF1 epsilon subunit [Cucumis melo var. makuwa] >TYK21703.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. makuwa])

HSP 1 Score: 123 bits (309), Expect = 2.88e-35
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0

Query: 1  MMNGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQT 60
          MMNGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQT
Sbjct: 1  MMNGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQT 60

Query: 61 IEAN 64
          IEAN
Sbjct: 61 IEAN 64

BLAST of IVF0021709 vs. NCBI nr
Match: YP_009752081.1 (CF1 subunit epsilon [Dendrosicyos socotranus] >YP_009753095.1 CF1 subunit epsilon [Corallocarpus boehmii] >QIT05491.1 CF1 subunit epsilon [Dendrosicyos socotranus] >QIT06167.1 CF1 subunit epsilon [Corallocarpus boehmii])

HSP 1 Score: 116 bits (290), Expect = 1.63e-31
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0

Query: 3   NGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQTIE 62
           +GWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI EANLRKAQGKRQTIE
Sbjct: 57  DGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIE 116

Query: 63  AN 64
           AN
Sbjct: 117 AN 118

BLAST of IVF0021709 vs. NCBI nr
Match: YP_009752418.1 (CF1 subunit epsilon [Trichosanthes tricuspidata] >YP_009753626.1 CF1 subunit epsilon [Trichosanthes wallichiana] >YP_009753711.1 CF1 subunit epsilon [Trichosanthes nervifolia] >QIT04645.1 CF1 subunit epsilon [Trichosanthes wallichiana] >QIT04814.1 CF1 subunit epsilon [Trichosanthes tricuspidata] >QIT05322.1 CF1 subunit epsilon [Trichosanthes nervifolia])

HSP 1 Score: 116 bits (290), Expect = 1.63e-31
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0

Query: 3   NGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQTIE 62
           +GWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI EANLRKAQGKRQTIE
Sbjct: 57  DGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIE 116

Query: 63  AN 64
           AN
Sbjct: 117 AN 118

BLAST of IVF0021709 vs. NCBI nr
Match: ASY96329.1 (ATP synthase CF1 epsilon subunit [Cucumis melo subsp. agrestis])

HSP 1 Score: 116 bits (290), Expect = 1.63e-31
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0

Query: 3   NGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQTIE 62
           +GWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI EANLRKAQGKRQTIE
Sbjct: 57  DGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIE 116

Query: 63  AN 64
           AN
Sbjct: 117 AN 118

BLAST of IVF0021709 vs. NCBI nr
Match: YP_004841789.1 (ATP synthase CF1 epsilon subunit [Cucumis melo subsp. melo] >YP_009004050.1 ATP synthase CF1 epsilon subunit [Cucumis hystrix] >YP_009317392.1 ATP synthase CF1 epsilon subunit [Coccinia grandis] >YP_009325995.1 ATP synthase CF1 epsilon subunit [Citrullus lanatus] >YP_009348037.1 ATP synthase CF1 epsilon subunit [Citrullus mucosospermus] >YP_009420800.1 ATP synthase CF1 epsilon subunit [Citrullus colocynthis] >YP_009431563.1 ATP synthase CF1 epsilon subunit [Citrullus amarus] >YP_009431648.1 ATP synthase CF1 epsilon subunit [Citrullus rehmii] >YP_009456152.1 ATP synthase CF1 epsilon subunit [Lagenaria siceraria] >YP_009860079.1 ATP synthase CF1 epsilon subunit [Cucumis melo subsp. agrestis] >YP_247605.1 ATP synthase CF1 epsilon subunit [Cucumis sativus] >Q4VZG9.1 RecName: Full=ATP synthase epsilon chain, chloroplastic; AltName: Full=ATP synthase F1 sector epsilon subunit; AltName: Full=F-ATPase epsilon subunit [Cucumis sativus] >ALF03307.1 ATP synthase CF1 epsilon subunit [Cucumis sativus var. hardwickii] >APW82467.1 ATP synthase CF1 epsilon subunit [Citrullus lanatus subsp. vulgaris] >ASY96590.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. conomon] >ASY96677.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. makuwa] >ASY96764.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. momordica] >ASY96851.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. dudaim] >ASY96938.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. cantalupo] >ASY97112.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. inodorus] >ASY97286.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. flexuosus] >AVE15337.1 AtpE [Cucumis sativus var. sativus] >QJF46389.1 ATP synthase CF1 epsilon subunit [Cucumis melo] >QNM38537.1 ATP synthase CF1 epsilon subunit [Lagenaria siceraria var. microcarpa] >QZL38599.1 CF1 subunit epsilon [Citrullus naudinianus] >QZL38687.1 CF1 subunit epsilon [Citrullus ecirrhosus])

HSP 1 Score: 116 bits (290), Expect = 1.63e-31
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0

Query: 3   NGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQTIE 62
           +GWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI EANLRKAQGKRQTIE
Sbjct: 57  DGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIE 116

Query: 63  AN 64
           AN
Sbjct: 117 AN 118

BLAST of IVF0021709 vs. TAIR 10
Match: ATCG00470.1 (ATP synthase epsilon chain )

HSP 1 Score: 112.5 bits (280), Expect = 1.3e-25
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 0

Query: 1   MMNGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQT 60
           + N WLTMALMGGFARIGNNE+TILVNDAEK SDIDPQEAQQTLEI EANLRKA+GKRQT
Sbjct: 53  LANQWLTMALMGGFARIGNNEITILVNDAEKNSDIDPQEAQQTLEIAEANLRKAEGKRQT 112

Query: 61  IEAN 65
           IEAN
Sbjct: 113 IEAN 116

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q4VZG95.7e-2696.77ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus OX=3659 GN=atpE PE=... [more]
P094681.8e-2489.06ATP synthase epsilon chain, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=atp... [more]
Q09MH29.0e-2491.67ATP synthase epsilon chain, chloroplastic OS=Citrus sinensis OX=2711 GN=atpE PE=... [more]
Q49KZ29.0e-2490.00ATP synthase epsilon chain, chloroplastic OS=Eucalyptus globulus subsp. globulus... [more]
A0ZZ419.0e-2491.67ATP synthase epsilon chain, chloroplastic OS=Gossypium barbadense OX=3634 GN=atp... [more]
Match NameE-valueIdentityDescription
A0A5D3DDV01.7e-25100.00ATP synthase CF1 epsilon subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A218KG492.1e-2396.77ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus var. hardwickii OX=... [more]
G3ETZ12.1e-2396.77ATP synthase epsilon chain, chloroplastic OS=Cucumis melo subsp. melo OX=412675 ... [more]
A0A1X9Q1L02.1e-2396.77ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus OX=3659 GN=atpE PE=... [more]
A0A249RZA22.1e-2396.77ATP synthase epsilon chain, chloroplastic OS=Cucumis melo var. cantalupensis OX=... [more]
Match NameE-valueIdentityDescription
KAA0040079.12.88e-35100.00ATP synthase CF1 epsilon subunit [Cucumis melo var. makuwa] >TYK21703.1 ATP synt... [more]
YP_009752081.11.63e-3196.77CF1 subunit epsilon [Dendrosicyos socotranus] >YP_009753095.1 CF1 subunit epsilo... [more]
YP_009752418.11.63e-3196.77CF1 subunit epsilon [Trichosanthes tricuspidata] >YP_009753626.1 CF1 subunit eps... [more]
ASY96329.11.63e-3196.77ATP synthase CF1 epsilon subunit [Cucumis melo subsp. agrestis][more]
YP_004841789.11.63e-3196.77ATP synthase CF1 epsilon subunit [Cucumis melo subsp. melo] >YP_009004050.1 ATP ... [more]
Match NameE-valueIdentityDescription
ATCG00470.11.3e-2589.06ATP synthase epsilon chain [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 44..64
NoneNo IPR availableGENE3D6.10.140.480coord: 37..64
e-value: 2.8E-13
score: 51.2
NoneNo IPR availablePANTHERPTHR13822:SF10ATP SYNTHASE EPSILON CHAIN, CHLOROPLASTICcoord: 3..64
IPR036771F0F1 ATP synthase delta/epsilon subunit, N-terminalGENE3D2.60.15.10coord: 2..36
e-value: 1.0E-5
score: 27.5
IPR036771F0F1 ATP synthase delta/epsilon subunit, N-terminalSUPERFAMILY51344Epsilon subunit of F1F0-ATP synthase N-terminal domaincoord: 3..31
IPR001469ATP synthase, F1 complex, delta/epsilon subunitPANTHERPTHR13822ATP SYNTHASE DELTA/EPSILON CHAINcoord: 3..64

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0021709.2IVF0021709.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015986 ATP synthesis coupled proton transport
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function GO:0005524 ATP binding
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism