IVF0021593 (gene) Melon (IVF77) v1

Overview
NameIVF0021593
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPol protein
Locationchr05: 10464786 .. 10465103 (+)
RNA-Seq ExpressionIVF0021593
SyntenyIVF0021593
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTTTCCGTCCCGACCTTCTCCTTCGTTCAGCTCTTTCCCAACAACGCCAGCACGCATGCCTTTCCGTCCCGACCTTCTCCTTCGTTCAGCTGACAGCACTGCTGTCCTCTCCTTTTCATTTCGGCGCTTCTTCTCCGCTGCCGTCGTCCGCACAGGTGGCGACGTTTTTACACTGGCAGCTTCAGATGAACGCAAGGGAGTCGGTTATCTCTGCTGCAGTCGATCGTCTGTCAACTCCTCCGCCTTCATCTTTTTCGTCCCAAAAACCGCCCTGCGTCCCCTTTTCGACCGTCGTCACGTGGAGTAGAAAGTAG

mRNA sequence

ATGCCTTTCCGTCCCGACCTTCTCCTTCGTTCAGCTCTTTCCCAACAACGCCAGCACGCATGCCTTTCCGTCCCGACCTTCTCCTTCGTTCAGCTGACAGCACTGCTGTCCTCTCCTTTTCATTTCGGCGCTTCTTCTCCGCTGCCGTCGTCCGCACAGGTGGCGACGTTTTTACACTGGCAGCTTCAGATGAACGCAAGGGAGTCGGTTATCTCTGCTGCAGTCGATCGTCTGTCAACTCCTCCGCCTTCATCTTTTTCGTCCCAAAAACCGCCCTGCGTCCCCTTTTCGACCGTCGTCACGTGGAGTAGAAAGTAG

Coding sequence (CDS)

ATGCCTTTCCGTCCCGACCTTCTCCTTCGTTCAGCTCTTTCCCAACAACGCCAGCACGCATGCCTTTCCGTCCCGACCTTCTCCTTCGTTCAGCTGACAGCACTGCTGTCCTCTCCTTTTCATTTCGGCGCTTCTTCTCCGCTGCCGTCGTCCGCACAGGTGGCGACGTTTTTACACTGGCAGCTTCAGATGAACGCAAGGGAGTCGGTTATCTCTGCTGCAGTCGATCGTCTGTCAACTCCTCCGCCTTCATCTTTTTCGTCCCAAAAACCGCCCTGCGTCCCCTTTTCGACCGTCGTCACGTGGAGTAGAAAGTAG

Protein sequence

MPFRPDLLLRSALSQQRQHACLSVPTFSFVQLTALLSSPFHFGASSPLPSSAQVATFLHWQLQMNARESVISAAVDRLSTPPPSSFSSQKPPCVPFSTVVTWSRK
Homology
[Close]
BLAST of IVF0021593 vs. ExPASy TrEMBL
Match: A0A5D3DDX8 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1721G00280 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 7.9e-04
Identity = 32/67 (47.76%), Postives = 37/67 (55.22%), Query Frame = 0 

Query: 15   QQRQHACLSVPTFSFVQLTALLSSPFHFGASSPLPSSAQVATFLHWQLQMNARESVISAA 74
            + R+   +  P  S    TA  S P HF  SSP PSS Q    L  QL+ N RESV+SAA
Sbjct: 1021 RNREIPLVKPPVISACLPTAPPSPPLHFSVSSPPPSSTQATISLRRQLRTNPRESVVSAA 1080

Query: 75   VDRLSTP 82
            V R STP
Sbjct: 1081 VGRPSTP 1087

[Close]
BLAST of IVF0021593 vs. NCBI nr
Match: TYK21774.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 53.1 bits (126), Expect = 2.26e-05
Identity = 32/67 (47.76%), Postives = 37/67 (55.22%), Query Frame = 0 

Query: 15   QQRQHACLSVPTFSFVQLTALLSSPFHFGASSPLPSSAQVATFLHWQLQMNARESVISAA 74
            + R+   +  P  S    TA  S P HF  SSP PSS Q    L  QL+ N RESV+SAA
Sbjct: 1021 RNREIPLVKPPVISACLPTAPPSPPLHFSVSSPPPSSTQATISLRRQLRTNPRESVVSAA 1080

Query: 75   VDRLSTP 81
            V R STP
Sbjct: 1081 VGRPSTP 1087

The following BLAST results are available for this feature:
BLAST of IVF0021593 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0021593 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DDX87.9e-0447.76Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1721G00280 P... [more]
BLAST of IVF0021593 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK21774.12.26e-0547.76pol protein [Cucumis melo var. makuwa][more]
BLAST of IVF0021593 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0021593.1IVF0021593.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity