IVF0020994 (gene) Melon (IVF77) v1

Overview
NameIVF0020994
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Locationchr09: 12408506 .. 12408738 (-)
RNA-Seq ExpressionIVF0020994
SyntenyIVF0020994
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTTTAATAATGAGGAGATTACGTTCAACGTTATCAACGCGATGAAGTTTCCCGCTAATGTTGAGAACTATAGCGCAATAGAGTCCCTTGGATGGGACTATTGCAAGGAAGAAGCCTATTACGAGCTGTTTAGCACTGAAGAATTCCTTGAGGAGGATGACCAGATTATATACTAGAAGAAGTGAACGCTGTGTCTGGCGAAAAGAAGTTCAAACCTTTGGATTTATAA

mRNA sequence

ATGCATTTTAATAATGAGGAGATTACGTTCAACGTTATCAACGCGATGAAGTTTCCCGCTAATGTTGAGAACTATAGCGCAATAGAGTCCCTTGGATGGGACTATTGCAAGGAAGAAGCCTATTACGAGCTGTTTAATTATATACTAGAAGAAGTGAACGCTGTGTCTGGCGAAAAGAAGTTCAAACCTTTGGATTTATAA

Coding sequence (CDS)

ATGCATTTTAATAATGAGGAGATTACGTTCAACGTTATCAACGCGATGAAGTTTCCCGCTAATGTTGAGAACTATAGCGCAATAGAGTCCCTTGGATGGGACTATTGCAAGGAAGAAGCCTATTACGAGCTGTTTAATTATATACTAGAAGAAGTGAACGCTGTGTCTGGCGAAAAGAAGTTCAAACCTTTGGATTTATAA

Protein sequence

MHFNNEEITFNVINAMKFPANVENYSAIESLGWDYCKEEAYYELFNYILEEVNAVSGEKKFKPLDL
Homology
BLAST of IVF0020994 vs. ExPASy TrEMBL
Match: A0A5A7V931 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G001730 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.2e-27
Identity = 65/77 (84.42%), Postives = 66/77 (85.71%), Query Frame = 0

Query: 1   MHFNNEEITFNVINAMKFPANVENYSAIESLGWDYCKEEAYYELF-----------NYIL 60
           MHFNNEEITFNVINAMKFPANVENYSAIESLGWDYCKEEAYYELF           +YIL
Sbjct: 207 MHFNNEEITFNVINAMKFPANVENYSAIESLGWDYCKEEAYYELFSTEEFLEEDEPDYIL 266

Query: 61  EEVNAVSGEKKFKPLDL 67
           EEVNAVSGEKKFKPLDL
Sbjct: 267 EEVNAVSGEKKFKPLDL 283

BLAST of IVF0020994 vs. ExPASy TrEMBL
Match: A0A5D3DTC1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002140 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.2e-27
Identity = 65/77 (84.42%), Postives = 66/77 (85.71%), Query Frame = 0

Query: 1   MHFNNEEITFNVINAMKFPANVENYSAIESLGWDYCKEEAYYELF-----------NYIL 60
           MHFNNEEITFNVINAMKFPANVENYSAIESLGWDYCKEEAYYELF           +YIL
Sbjct: 183 MHFNNEEITFNVINAMKFPANVENYSAIESLGWDYCKEEAYYELFSTEEFLEEDEPDYIL 242

Query: 61  EEVNAVSGEKKFKPLDL 67
           EEVNAVSGEKKFKPLDL
Sbjct: 243 EEVNAVSGEKKFKPLDL 259

BLAST of IVF0020994 vs. ExPASy TrEMBL
Match: A0A5D3BYK3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119G00360 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.7e-16
Identity = 47/77 (61.04%), Postives = 55/77 (71.43%), Query Frame = 0

Query: 1   MHFNNEEITFNVINAMKFPANVENYSAIESLGWDYCKEEAYYELF-----------NYIL 60
           M FN+EEI FN++N +KFP++VEN SAIES  WDYC+EEA YELF           NYIL
Sbjct: 76  MSFNDEEIKFNIVNVIKFPSDVENCSAIESFEWDYCEEEACYELFSTNEFLEEDKPNYIL 135

Query: 61  EEVNAVSGEKKFKPLDL 67
           EEVN VS E KF+ LDL
Sbjct: 136 EEVNPVSDENKFESLDL 152

BLAST of IVF0020994 vs. ExPASy TrEMBL
Match: A0A5D3C2R8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G002090 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.2e-15
Identity = 45/77 (58.44%), Postives = 55/77 (71.43%), Query Frame = 0

Query: 1   MHFNNEEITFNVINAMKFPANVENYSAIESLGWDYCKEEAYYELF-----------NYIL 60
           MHFN+EE+ FNV+NAMKFP + +NY+ I+S GW Y KEE Y ELF           NYIL
Sbjct: 29  MHFNDEEVKFNVVNAMKFPIDDKNYTVIKSFGWVYFKEEVYEELFSTKEFFEEEDPNYIL 88

Query: 61  EEVNAVSGEKKFKPLDL 67
           EE NA+SGE+KF+ LDL
Sbjct: 89  EEENAMSGERKFESLDL 105

BLAST of IVF0020994 vs. ExPASy TrEMBL
Match: A0A5A7TL87 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2741G00320 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.4e-14
Identity = 44/77 (57.14%), Postives = 54/77 (70.13%), Query Frame = 0

Query: 1   MHFNNEEITFNVINAMKFPANVENYSAIESLGWDYCKEEAYYELF-----------NYIL 60
           MHFN+EE+ FNV+NAMKFP + +NY+ I+S GW Y KE  Y ELF           NYIL
Sbjct: 147 MHFNDEEVKFNVVNAMKFPIDDKNYTVIKSFGWVYFKEGVYEELFSTKEFFEEEDPNYIL 206

Query: 61  EEVNAVSGEKKFKPLDL 67
           EE NA+SGE+KF+ LDL
Sbjct: 207 EEENAMSGERKFESLDL 223

BLAST of IVF0020994 vs. NCBI nr
Match: TYK26585.1 (uncharacterized protein E5676_scaffold313G002140 [Cucumis melo var. makuwa])

HSP 1 Score: 129 bits (324), Expect = 3.50e-35
Identity = 65/77 (84.42%), Postives = 66/77 (85.71%), Query Frame = 0

Query: 1   MHFNNEEITFNVINAMKFPANVENYSAIESLGWDYCKEEAYYELFN-----------YIL 60
           MHFNNEEITFNVINAMKFPANVENYSAIESLGWDYCKEEAYYELF+           YIL
Sbjct: 183 MHFNNEEITFNVINAMKFPANVENYSAIESLGWDYCKEEAYYELFSTEEFLEEDEPDYIL 242

Query: 61  EEVNAVSGEKKFKPLDL 66
           EEVNAVSGEKKFKPLDL
Sbjct: 243 EEVNAVSGEKKFKPLDL 259

BLAST of IVF0020994 vs. NCBI nr
Match: KAA0062395.1 (uncharacterized protein E6C27_scaffold154G001730 [Cucumis melo var. makuwa])

HSP 1 Score: 129 bits (324), Expect = 6.18e-35
Identity = 65/77 (84.42%), Postives = 66/77 (85.71%), Query Frame = 0

Query: 1   MHFNNEEITFNVINAMKFPANVENYSAIESLGWDYCKEEAYYELFN-----------YIL 60
           MHFNNEEITFNVINAMKFPANVENYSAIESLGWDYCKEEAYYELF+           YIL
Sbjct: 207 MHFNNEEITFNVINAMKFPANVENYSAIESLGWDYCKEEAYYELFSTEEFLEEDEPDYIL 266

Query: 61  EEVNAVSGEKKFKPLDL 66
           EEVNAVSGEKKFKPLDL
Sbjct: 267 EEVNAVSGEKKFKPLDL 283

BLAST of IVF0020994 vs. NCBI nr
Match: KAA0066655.1 (uncharacterized protein E6C27_scaffold979G00870 [Cucumis melo var. makuwa] >TYK04098.1 uncharacterized protein E5676_scaffold2119G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 1.08e-21
Identity = 47/77 (61.04%), Postives = 55/77 (71.43%), Query Frame = 0

Query: 1   MHFNNEEITFNVINAMKFPANVENYSAIESLGWDYCKEEAYYELF-----------NYIL 60
           M FN+EEI FN++N +KFP++VEN SAIES  WDYC+EEA YELF           NYIL
Sbjct: 76  MSFNDEEIKFNIVNVIKFPSDVENCSAIESFEWDYCEEEACYELFSTNEFLEEDKPNYIL 135

Query: 61  EEVNAVSGEKKFKPLDL 66
           EEVN VS E KF+ LDL
Sbjct: 136 EEVNPVSDENKFESLDL 152

BLAST of IVF0020994 vs. NCBI nr
Match: TYK05498.1 (uncharacterized protein E5676_scaffold83G002090 [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 4.79e-21
Identity = 45/77 (58.44%), Postives = 55/77 (71.43%), Query Frame = 0

Query: 1   MHFNNEEITFNVINAMKFPANVENYSAIESLGWDYCKEEAYYELF-----------NYIL 60
           MHFN+EE+ FNV+NAMKFP + +NY+ I+S GW Y KEE Y ELF           NYIL
Sbjct: 29  MHFNDEEVKFNVVNAMKFPIDDKNYTVIKSFGWVYFKEEVYEELFSTKEFFEEEDPNYIL 88

Query: 61  EEVNAVSGEKKFKPLDL 66
           EE NA+SGE+KF+ LDL
Sbjct: 89  EEENAMSGERKFESLDL 105

BLAST of IVF0020994 vs. NCBI nr
Match: KAA0032353.1 (uncharacterized protein E6C27_scaffold219G002180 [Cucumis melo var. makuwa] >TYK31626.1 uncharacterized protein E5676_scaffold340G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 8.29e-20
Identity = 43/74 (58.11%), Postives = 51/74 (68.92%), Query Frame = 0

Query: 1   MHFNNEEITFNVINAMKFPANVENYSAIESLGWDYCKEEAYYELF-----------NYIL 60
           M F+NEE+  NV+N MKF +  EN +AIESLGWDYC+EE Y ELF           NYIL
Sbjct: 48  MRFSNEEVKSNVVNVMKFYSYTENCNAIESLGWDYCEEEVYVELFSLEEFFKEDDVNYIL 107

Query: 61  EEVNAVSGEKKFKP 63
           EEVN VSG +KF+P
Sbjct: 108 EEVNVVSGARKFEP 121

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V9314.2e-2784.42Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DTC14.2e-2784.42Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BYK35.7e-1661.04Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3C2R82.2e-1558.44Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TL871.4e-1457.14Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
TYK26585.13.50e-3584.42uncharacterized protein E5676_scaffold313G002140 [Cucumis melo var. makuwa][more]
KAA0062395.16.18e-3584.42uncharacterized protein E6C27_scaffold154G001730 [Cucumis melo var. makuwa][more]
KAA0066655.11.08e-2161.04uncharacterized protein E6C27_scaffold979G00870 [Cucumis melo var. makuwa] >TYK0... [more]
TYK05498.14.79e-2158.44uncharacterized protein E5676_scaffold83G002090 [Cucumis melo var. makuwa][more]
KAA0032353.18.29e-2058.11uncharacterized protein E6C27_scaffold219G002180 [Cucumis melo var. makuwa] >TYK... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0020994.1IVF0020994.1mRNA