IVF0020770 (gene) Melon (IVF77) v1

Overview


Name	IVF0020770
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Arabinogalactan protein 22, putative
Location	chr05: 25977681 .. 25978316 (-)
RNA-Seq Expression	IVF0020770
Synteny	IVF0020770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCACCCCAATTCATTTCCCCATATAAATACCCTAATCTTCAAATCCACCATTCCAAACTTCAACTTCGATTTCAATAGAGGAGAAATATTTGATTTTCTAAATTTTCGGCAATTTTTCTAGTCGATTCACAAAACATGAGTTCGTTGAAGCTCACTGCCGTTCCGTTCGTCGGATTCTTGTTCTTGATTATTCTTCAATTGGCTCACGGCCACTCCCACGATATTTCACCGGCGGAAGGTCCTTCTAACGACGGTGAGTTCCTGGCTGTAATTACGATTTTCTACATGTGGTTTGATCTCGTCTATTTGATTTGAAATTTCACAATTTAGTTCTTCCTTCTAACTCTGTAATTTGAATCTAACTCTTCAATCTAAATTCTGTAATTTGAAGTGTTCAATTAAGACGATAAGTTCGAGAATCACTTGATTAGTTTTTTATTTGAATCTTTTTAGTTTAGTTTTGTATTTTGATATTTGTTAGTTGTTGCAGGAGCTGCAATTGACCAAGGGATTGCGTACGTTCTTCTTCTGCTTGCTCTCGCCATTACCTACATCATCCATTGACAACTTTTGTATTAATCAAATGATTTTGGGTTCGATATGTAGTGTTTTTTTTTTTGTAGTTTTTTCTCCC

mRNA sequence

ATTCACCCCAATTCATTTCCCCATATAAATACCCTAATCTTCAAATCCACCATTCCAAACTTCAACTTCGATTTCAATAGAGGAGAAATATTTGATTTTCTAAATTTTCGGCAATTTTTCTAGTCGATTCACAAAACATGAGTTCGTTGAAGCTCACTGCCGTTCCGTTCGTCGGATTCTTGTTCTTGATTATTCTTCAATTGGCTCACGGCCACTCCCACGATATTTCACCGGCGGAAGGTCCTTCTAACGACGGAGCTGCAATTGACCAAGGGATTGCGTACGTTCTTCTTCTGCTTGCTCTCGCCATTACCTACATCATCCATTGACAACTTTTGTATTAATCAAATGATTTTGGGTTCGATATGTAGTGTTTTTTTTTTTGTAGTTTTTTCTCCC

Coding sequence (CDS)

ATGAGTTCGTTGAAGCTCACTGCCGTTCCGTTCGTCGGATTCTTGTTCTTGATTATTCTTCAATTGGCTCACGGCCACTCCCACGATATTTCACCGGCGGAAGGTCCTTCTAACGACGGAGCTGCAATTGACCAAGGGATTGCGTACGTTCTTCTTCTGCTTGCTCTCGCCATTACCTACATCATCCATTGA

Protein sequence

MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH

Homology

[Close]

BLAST of IVF0020770 vs. ExPASy Swiss-Prot
Match: Q9FK16 (Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.7e-09
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 1  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITY 60
          M+SLK        F+ + ++ L    SH  SPA  P++DG +IDQGIAYVL+++ALA+TY
Sbjct: 1  MASLKFPLEILAVFVIISVILLPIAQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 IIH 64
           IH
Sbjct: 61 FIH 63

[Close]

BLAST of IVF0020770 vs. ExPASy Swiss-Prot
Match: Q8L9T8 (Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.2e-08
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 12 VGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH 64
          V  +F I+L +AH  S   +PA  P++DG  IDQGIAYVL+L+AL +TY+IH
Sbjct: 14 VSIIFAILLPMAHAQS--AAPAPAPTSDGTTIDQGIAYVLMLVALVLTYLIH 63

[Close]

BLAST of IVF0020770 vs. ExPASy Swiss-Prot
Match: O82337 (Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.0e-07
Identity = 27/58 (46.55%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 6  LTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH 64
          +T      F+F +IL LA   S  ++PA  P++DG +IDQGIAY+L+++AL +TY+IH
Sbjct: 7  VTGFALFSFVFAVILSLAGAQS--LAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]

BLAST of IVF0020770 vs. ExPASy Swiss-Prot
Match: Q9M373 (Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 4.9e-06
Identity = 24/58 (41.38%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 6  LTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH 64
          +  +    F+F +I   A   S  ++PA  P++DG +IDQGIAY+L+++AL +TY+IH
Sbjct: 7  VAVIALFAFVFAVISPFAGAQS--LAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]

BLAST of IVF0020770 vs. ExPASy TrEMBL
Match: A0A5A7V7C0 (Putative Arabinogalactan protein 22 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00220 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.9e-25
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITY 60
          MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITY
Sbjct: 1  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITY 60

Query: 61 IIH 64
          IIH
Sbjct: 61 IIH 63

[Close]

BLAST of IVF0020770 vs. ExPASy TrEMBL
Match: A0A0A0LIU0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004710 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.6e-23
Identity = 58/63 (92.06%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITY 60
          MSSLKLTAVP VGFLFLI+LQLAHGHSHDISPA GPSNDGAAIDQGIAYVLLLLALA+TY
Sbjct: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTY 60

Query: 61 IIH 64
          I+H
Sbjct: 61 IVH 63

[Close]

BLAST of IVF0020770 vs. ExPASy TrEMBL
Match: A0A3N7G6R6 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G078801 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.6e-13
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 1  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITY 60
          MSS++L A+P +GF+FL +L+   G     SPAEGP+NDG  IDQGIAYVLL+LALAITY
Sbjct: 1  MSSMRLHALPIIGFMFLALLEFGFGQGTAPSPAEGPTNDGKTIDQGIAYVLLMLALAITY 60

Query: 61 IIH 64
          + H
Sbjct: 61 LFH 63

[Close]

BLAST of IVF0020770 vs. ExPASy TrEMBL
Match: A0A067KBQ4 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_07227 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.4e-11
Identity = 39/64 (60.94%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 1  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISP-AEGPSNDGAAIDQGIAYVLLLLALAIT 60
          MS + L A+P +GF+FL +LQL HG +   SP AEGPS+DG  IDQGIAYVL+L+ALA+T
Sbjct: 1  MSPMNLYALPIIGFMFLALLQLGHGQAIAPSPAAEGPSSDGNTIDQGIAYVLMLVALAVT 60

Query: 61 YIIH 64
          Y+ H
Sbjct: 61 YLFH 64

[Close]

BLAST of IVF0020770 vs. ExPASy TrEMBL
Match: A0A067E6Q0 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g036245mg PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.4e-11
Identity = 36/63 (57.14%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITY 60
          M+S++L A+P +GF+F+ ILQL +  +   SPA  PS+DG AIDQGIAY+L++LALAITY
Sbjct: 2  MNSMRLYALPVIGFMFMAILQLGNAQNMAPSPAPAPSSDGTAIDQGIAYILMVLALAITY 61

Query: 61 IIH 64
          ++H
Sbjct: 62 LVH 64

[Close]

BLAST of IVF0020770 vs. NCBI nr
Match: KAA0061559.1 (putative Arabinogalactan protein 22 [Cucumis melo var. makuwa] >TYK10713.1 putative Arabinogalactan protein 22 [Cucumis melo var. makuwa])

HSP 1 Score: 125 bits (313), Expect = 5.91e-36
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITY 60
          MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITY
Sbjct: 1  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITY 60

Query: 61 IIH 63
          IIH
Sbjct: 61 IIH 63

[Close]

BLAST of IVF0020770 vs. NCBI nr
Match: KGN60622.1 (hypothetical protein Csa_019490 [Cucumis sativus])

HSP 1 Score: 119 bits (298), Expect = 1.15e-33
Identity = 58/63 (92.06%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITY 60
          MSSLKLTAVP VGFLFLI+LQLAHGHSHDISPA GPSNDGAAIDQGIAYVLLLLALA+TY
Sbjct: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTY 60

Query: 61 IIH 63
          I+H
Sbjct: 61 IVH 63

[Close]

BLAST of IVF0020770 vs. NCBI nr
Match: RQP02858.1 (hypothetical protein POPTR_018G078801 [Populus trichocarpa])

HSP 1 Score: 83.6 bits (205), Expect = 1.80e-19
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 1  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITY 60
          MSS++L A+P +GF+FL +L+   G     SPAEGP+NDG  IDQGIAYVLL+LALAITY
Sbjct: 1  MSSMRLHALPIIGFMFLALLEFGFGQGTAPSPAEGPTNDGKTIDQGIAYVLLMLALAITY 60

Query: 61 IIH 63
          + H
Sbjct: 61 LFH 63

[Close]

BLAST of IVF0020770 vs. NCBI nr
Match: KAF9662510.1 (hypothetical protein SADUNF_Sadunf18G0060600 [Salix dunnii])

HSP 1 Score: 80.1 bits (196), Expect = 4.35e-18
Identity = 39/64 (60.94%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 1  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPA-EGPSNDGAAIDQGIAYVLLLLALAIT 60
          M+S++L A+P +GF+FL +L+   G     SPA EGPSNDG  IDQGIAYVLL+LALAIT
Sbjct: 1  MNSMRLYALPIIGFMFLALLEFGFGQGMASSPAPEGPSNDGKTIDQGIAYVLLMLALAIT 60

Query: 61 YIIH 63
          Y++H
Sbjct: 61 YLLH 64

[Close]

BLAST of IVF0020770 vs. NCBI nr
Match: ESR64379.1 (hypothetical protein CICLE_v10010340mg [Citrus clementina] >KDO50879.1 hypothetical protein CISIN_1g036245mg [Citrus sinensis])

HSP 1 Score: 79.7 bits (195), Expect = 6.19e-18
Identity = 36/63 (57.14%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITY 60
          M+S++L A+P +GF+F+ ILQL +  +   SPA  PS+DG AIDQGIAY+L++LALAITY
Sbjct: 2  MNSMRLYALPVIGFMFMAILQLGNAQNMAPSPAPAPSSDGTAIDQGIAYILMVLALAITY 61

Query: 61 IIH 63
          ++H
Sbjct: 62 LVH 64

[Close]

BLAST of IVF0020770 vs. TAIR 10
Match: AT5G53250.1 (arabinogalactan protein 22 )

HSP 1 Score: 61.2 bits (147), Expect = 3.4e-10
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 1  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITY 60
          M+SLK        F+ + ++ L    SH  SPA  P++DG +IDQGIAYVL+++ALA+TY
Sbjct: 1  MASLKFPLEILAVFVIISVILLPIAQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 IIH 64
           IH
Sbjct: 61 FIH 63

[Close]

BLAST of IVF0020770 vs. TAIR 10
Match: AT5G24105.1 (arabinogalactan protein 41 )

HSP 1 Score: 57.8 bits (138), Expect = 3.7e-09
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 12 VGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH 64
          V  +F I+L +AH  S   +PA  P++DG  IDQGIAYVL+L+AL +TY+IH
Sbjct: 14 VSIIFAILLPMAHAQS--AAPAPAPTSDGTTIDQGIAYVLMLVALVLTYLIH 63

[Close]

BLAST of IVF0020770 vs. TAIR 10
Match: AT2G46330.1 (arabinogalactan protein 16 )

HSP 1 Score: 55.8 bits (133), Expect = 1.4e-08
Identity = 27/58 (46.55%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 6  LTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH 64
          +T      F+F +IL LA   S  ++PA  P++DG +IDQGIAY+L+++AL +TY+IH
Sbjct: 7  VTGFALFSFVFAVILSLAGAQS--LAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]

BLAST of IVF0020770 vs. TAIR 10
Match: AT3G61640.1 (arabinogalactan protein 20 )

HSP 1 Score: 51.2 bits (121), Expect = 3.5e-07
Identity = 24/58 (41.38%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 6  LTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH 64
          +  +    F+F +I   A   S  ++PA  P++DG +IDQGIAY+L+++AL +TY+IH
Sbjct: 7  VAVIALFAFVFAVISPFAGAQS--LAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

The following BLAST results are available for this feature:

BLAST of IVF0020770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FK16	4.7e-09	47.62	Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1	[more]
Q8L9T8	5.2e-08	53.85	Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1	[more]
O82337	2.0e-07	46.55	Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1	[more]
Q9M373	4.9e-06	41.38	Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1	[more]

BLAST of IVF0020770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V7C0	2.9e-25	100.00	Putative Arabinogalactan protein 22 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A0A0LIU0	1.6e-23	92.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004710 PE=4 SV=1	[more]
A0A3N7G6R6	9.6e-13	61.90	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G078801 PE=4 ...	[more]
A0A067KBQ4	1.4e-11	60.94	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_07227 PE=4 SV=1	[more]
A0A067E6Q0	1.4e-11	57.14	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g036245mg PE=4 SV=1	[more]

BLAST of IVF0020770 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061559.1	5.91e-36	100.00	putative Arabinogalactan protein 22 [Cucumis melo var. makuwa] >TYK10713.1 putat...	[more]
KGN60622.1	1.15e-33	92.06	hypothetical protein Csa_019490 [Cucumis sativus]	[more]
RQP02858.1	1.80e-19	61.90	hypothetical protein POPTR_018G078801 [Populus trichocarpa]	[more]
KAF9662510.1	4.35e-18	60.94	hypothetical protein SADUNF_Sadunf18G0060600 [Salix dunnii]	[more]
ESR64379.1	6.19e-18	57.14	hypothetical protein CICLE_v10010340mg [Citrus clementina] >KDO50879.1 hypotheti...	[more]

BLAST of IVF0020770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53250.1	3.4e-10	47.62	arabinogalactan protein 22	[more]
AT5G24105.1	3.7e-09	53.85	arabinogalactan protein 41	[more]
AT2G46330.1	1.4e-08	46.55	arabinogalactan protein 16	[more]
AT3G61640.1	3.5e-07	41.38	arabinogalactan protein 20	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009424	Arabinogalactan protein 16/20/22/41	PFAM	PF06376	AGP	coord: 32..63 e-value: 2.1E-16 score: 59.5
IPR009424	Arabinogalactan protein 16/20/22/41	PANTHER	PTHR33374	ARABINOGALACTAN PROTEIN 20	coord: 2..63
None	No IPR available	PANTHER	PTHR33374:SF7	ARABINOGALACTAN PEPTIDE 22	coord: 2..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0020770.2	IVF0020770.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane