Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAACACTCGAAAGGGTTCTTATGCGGCAAAGTCTTCTGAAGATGATCTTGAAGCTCGAATTTCATCGCCTTCTATGCATAATATGAGGATGAGAGGTCGTTAGTTGAAAAGTACTCAACTACGGAGACCTTATTGCCTTTCGTTCAAAAAATCACAGGCGAATGTTTCGGCCAGTCTTCATGAGCCTTTGCCAGAAAAAGTTATTTCTCGTGATCCTAGGACGATTACTGAACATGCACTTGGTGTTCCTGAGACTCATATGTCTGATATAGATTTCGATGATCTTAATGATGTGCCTTTGGCCTGTTTGTGAAGAAGACTTTTGTTTCAGATGTTGCGGTTGAAAGGCCTATAGACGCTCCTGTATCGGATCATGCTCAGGAAAACTCGTCTACTGAAGGTGTGTTTGTTCCTACCCCTGGTCTTCAACATACTTCTACTTTTGAACCAGGTCCATCACTTTATTCATCTCTAGTTCAATCTCCTACTCCACATTCTACTTCCTCTAGTCTGAAAAATGACCCTGCATCTCCACCTGCTGATGAAACCGCTGCACTTGAGAGAGGGACTGATGTTCATAATGATGACGATGAGCTTGACCCTGTCATTCCTAAGGTTAATACTTGTGAGATCCCTGTTGATGTTGATGTTGATAATACCTTGGCTGCTCCAACTGAGTCTCCTGCATTTCCTGAGATATCCCGACCTGCAAAGAAAAAGTTGCAGCAGAATTAG
mRNA sequence
ATGGTGAACACTCGAAAGGGTTCTTATGCGGCAAAGTCTTCTGAAGATGATCTTGAAGCTCGAATTTCATCGCCTTCTATTACTCAACTACGGAGACCTTATTGCCTTTCGTTCAAAAAATCACAGAAGACTTTTGTTTCAGATGTTGCGGTTGAAAGGCCTATAGACGCTCCTGTATCGGATCATGCTCAGGAAAACTCGTCTACTGAAGGTGTGTTTGTTCCTACCCCTGGTCTTCAACATACTTCTACTTTTGAACCAGGTCCATCACTTTATTCATCTCTAGTTCAATCTCCTACTCCACATTCTACTTCCTCTAGTCTGAAAAATGACCCTGCATCTCCACCTGCTGATGAAACCGCTGCACTTGAGAGAGGGACTGATGTTCATAATGATGACGATGAGCTTGACCCTGTCATTCCTAAGGTTAATACTTGTGAGATCCCTGTTGATGTTGATGTTGATAATACCTTGGCTGCTCCAACTGAGTCTCCTGCATTTCCTGAGATATCCCGACCTGCAAAGAAAAAGTTGCAGCAGAATTAG
Coding sequence (CDS)
ATGGTGAACACTCGAAAGGGTTCTTATGCGGCAAAGTCTTCTGAAGATGATCTTGAAGCTCGAATTTCATCGCCTTCTATTACTCAACTACGGAGACCTTATTGCCTTTCGTTCAAAAAATCACAGAAGACTTTTGTTTCAGATGTTGCGGTTGAAAGGCCTATAGACGCTCCTGTATCGGATCATGCTCAGGAAAACTCGTCTACTGAAGGTGTGTTTGTTCCTACCCCTGGTCTTCAACATACTTCTACTTTTGAACCAGGTCCATCACTTTATTCATCTCTAGTTCAATCTCCTACTCCACATTCTACTTCCTCTAGTCTGAAAAATGACCCTGCATCTCCACCTGCTGATGAAACCGCTGCACTTGAGAGAGGGACTGATGTTCATAATGATGACGATGAGCTTGACCCTGTCATTCCTAAGGTTAATACTTGTGAGATCCCTGTTGATGTTGATGTTGATAATACCTTGGCTGCTCCAACTGAGTCTCCTGCATTTCCTGAGATATCCCGACCTGCAAAGAAAAAGTTGCAGCAGAATTAG
Protein sequence
MVNTRKGSYAAKSSEDDLEARISSPSITQLRRPYCLSFKKSQKTFVSDVAVERPIDAPVSDHAQENSSTEGVFVPTPGLQHTSTFEPGPSLYSSLVQSPTPHSTSSSLKNDPASPPADETAALERGTDVHNDDDELDPVIPKVNTCEIPVDVDVDNTLAAPTESPAFPEISRPAKKKLQQN
Homology
BLAST of IVF0020458 vs. ExPASy TrEMBL
Match:
A0A5D3C2V7 (Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00920 PE=4 SV=1)
HSP 1 Score: 300.4 bits (768), Expect = 4.9e-78
Identity = 160/181 (88.40%), Postives = 162/181 (89.50%), Query Frame = 0
Query: 1 MVNTRKGSYAAKSSEDDLEARISSPSITQLRRPYCLSFKKSQKTFVSDVAVERPIDAPVS 60
MVNTRKGSYAAKSSEDDLEARISSPS+ +R VAVERPIDAPVS
Sbjct: 1 MVNTRKGSYAAKSSEDDLEARISSPSMHNMR-------------MRGHVAVERPIDAPVS 60
Query: 61 DHAQENSSTEGVFVPTPGLQHTSTFEPGPSLYSSLVQSPTPHSTSSSLKNDPASPPADET 120
DHAQENSSTEGVFVPTPGLQHTSTFEPGPSLYSSLVQSPTPHSTSSSLKNDPASPPADET
Sbjct: 61 DHAQENSSTEGVFVPTPGLQHTSTFEPGPSLYSSLVQSPTPHSTSSSLKNDPASPPADET 120
Query: 121 AALERGTDVHNDDDELDPVIPKVNTCEIPVDVDVDNTLAAPTESPAFPEISRPAKKKLQQ 180
AALERGTDVHNDDDELDPVIPKVNTCEIPVDVDVDNTLAAPTESPAFPEISRPAKKKLQQ
Sbjct: 121 AALERGTDVHNDDDELDPVIPKVNTCEIPVDVDVDNTLAAPTESPAFPEISRPAKKKLQQ 168
Query: 181 N 182
N
Sbjct: 181 N 168
BLAST of IVF0020458 vs. ExPASy TrEMBL
Match:
A0A5A7TVL3 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G001950 PE=4 SV=1)
HSP 1 Score: 225.3 bits (573), Expect = 2.0e-55
Identity = 116/126 (92.06%), Postives = 118/126 (93.65%), Query Frame = 0
Query: 56 DAPVSDHAQENSSTEGVFVPTPGLQHTSTFEPGPSLYSSLVQSPTPHSTSSSLKNDPASP 115
D D E+SSTEGVFVPTP LQHTSTFEPGPSLYSSLVQSPTPHSTSSSLKNDPASP
Sbjct: 90 DIDFDDLNDESSSTEGVFVPTPSLQHTSTFEPGPSLYSSLVQSPTPHSTSSSLKNDPASP 149
Query: 116 PADETAALERGTDVHNDDDELDPVIPKVNTCEIPVDVDVDNTLAAPTESPAFPEISRPAK 175
PADETAALERGTDVHNDDDELDPVIPKVNTCEIPVDVDVDNTLAAPTESPAFP+ISRPAK
Sbjct: 150 PADETAALERGTDVHNDDDELDPVIPKVNTCEIPVDVDVDNTLAAPTESPAFPKISRPAK 209
Query: 176 KKLQQN 182
KKLQQN
Sbjct: 210 KKLQQN 215
BLAST of IVF0020458 vs. ExPASy TrEMBL
Match:
A0A5A7U5S6 (Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G001470 PE=4 SV=1)
HSP 1 Score: 216.5 bits (550), Expect = 9.4e-53
Identity = 135/242 (55.79%), Postives = 145/242 (59.92%), Query Frame = 0
Query: 1 MVNTRKGSYAAKSSEDDLEARISSPSI------------TQLRRPYCLSFKKSQ------ 60
MV TR GS+A K E+DLEARISS S+ T RRPY LSF+KSQ
Sbjct: 1 MVKTRNGSFATKPFEEDLEARISSLSMHNVRMRGRRFKSTPQRRPYRLSFEKSQANVLVN 60
Query: 61 -----------------------------------------------KTFVSDVAVERPI 120
KT V DVAVERPI
Sbjct: 61 LHELVSEKVVYRDTATIAKYPPGALEAHMSNMDSNDLDDVPLARLLKKTSVPDVAVERPI 120
Query: 121 DAPVSDHAQENSSTEGVFVPTPGLQHTSTFEPGPSLYSSLVQSPTPHSTSSSLKNDPASP 178
D PVSDH QE+SSTEGV VPTPGLQHT T EPGPS YSSLV+SP P++TSS L ND AS
Sbjct: 121 DPPVSDHFQESSSTEGVLVPTPGLQHTFTLEPGPSFYSSLVRSPAPNTTSSGLNNDHASQ 180
BLAST of IVF0020458 vs. ExPASy TrEMBL
Match:
A0A5A7UZP9 (Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00990 PE=4 SV=1)
HSP 1 Score: 203.4 bits (516), Expect = 8.2e-49
Identity = 129/238 (54.20%), Postives = 143/238 (60.08%), Query Frame = 0
Query: 1 MVNTRKGSYAAKSSEDDLEARISSPSITQLR------------RPYCLSFKKSQ------ 60
MVNTRKGSYAAKSSEDDLEARISSP + +R RPY LS +KSQ
Sbjct: 1 MVNTRKGSYAAKSSEDDLEARISSPPMHNVRIKGHRFKSTPPQRPYRLSSEKSQANVSTN 60
Query: 61 -----------------------------------------------KTFVSDVAVERPI 120
KT + DVAVERPI
Sbjct: 61 LHEPVPKKVVSRDRATIAEHDPGAPATHMFDMDSDDLDDVPLARLLKKTSIPDVAVERPI 120
Query: 121 DAPVSDHAQENSSTEGVFVPTPGLQHTSTFEPGPSLYSSLVQSPTPHSTSSSLKNDPASP 172
D VSDH++ENSS EGVFVPTP LQH ST EPG SLYSS VQS TP++TSS L ND ASP
Sbjct: 121 DPHVSDHSKENSSPEGVFVPTPNLQHISTVEPGSSLYSSPVQSSTPNTTSSGLNNDTASP 180
BLAST of IVF0020458 vs. ExPASy TrEMBL
Match:
A0A5A7UCZ0 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold441G00190 PE=4 SV=1)
HSP 1 Score: 182.2 bits (461), Expect = 2.0e-42
Identity = 98/136 (72.06%), Postives = 110/136 (80.88%), Query Frame = 0
Query: 42 QKTFVSDVAVERPIDAPVSDHAQENSSTEGVFVPTPGLQHTSTFEPGPSLYSSLVQSPTP 101
+KT +++V VERPID VS+H+QE+SSTEGVFVPT GLQH ST E GPSLYSSLV+SPTP
Sbjct: 422 KKTSITNVVVERPIDPLVSNHSQESSSTEGVFVPTSGLQHISTVESGPSLYSSLVRSPTP 481
Query: 102 HSTSSSLKNDPASPPADETAALERGTDVHNDDDELDPVIPKVNTCEIPVDVDVDNTLAAP 161
+ TSSS NDP SPPADET A E G DVHNDDDELDPVI +VNT +IP DV+VDNT A P
Sbjct: 482 NPTSSSQNNDPTSPPADETVAPEEGIDVHNDDDELDPVILEVNTGDIPFDVNVDNTSATP 541
Query: 162 TESPAFPEISRPAKKK 178
TES AF E SR KKK
Sbjct: 542 TESSAFSEESRRVKKK 557
BLAST of IVF0020458 vs. NCBI nr
Match:
TYK04776.1 (envelope-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 299 bits (765), Expect = 2.42e-101
Identity = 160/181 (88.40%), Postives = 162/181 (89.50%), Query Frame = 0
Query: 1 MVNTRKGSYAAKSSEDDLEARISSPSITQLRRPYCLSFKKSQKTFVSDVAVERPIDAPVS 60
MVNTRKGSYAAKSSEDDLEARISSPS+ +R VAVERPIDAPVS
Sbjct: 1 MVNTRKGSYAAKSSEDDLEARISSPSMHNMRMR-------------GHVAVERPIDAPVS 60
Query: 61 DHAQENSSTEGVFVPTPGLQHTSTFEPGPSLYSSLVQSPTPHSTSSSLKNDPASPPADET 120
DHAQENSSTEGVFVPTPGLQHTSTFEPGPSLYSSLVQSPTPHSTSSSLKNDPASPPADET
Sbjct: 61 DHAQENSSTEGVFVPTPGLQHTSTFEPGPSLYSSLVQSPTPHSTSSSLKNDPASPPADET 120
Query: 121 AALERGTDVHNDDDELDPVIPKVNTCEIPVDVDVDNTLAAPTESPAFPEISRPAKKKLQQ 180
AALERGTDVHNDDDELDPVIPKVNTCEIPVDVDVDNTLAAPTESPAFPEISRPAKKKLQQ
Sbjct: 121 AALERGTDVHNDDDELDPVIPKVNTCEIPVDVDVDNTLAAPTESPAFPEISRPAKKKLQQ 168
BLAST of IVF0020458 vs. NCBI nr
Match:
KAA0047004.1 (putative mitochondrial protein [Cucumis melo var. makuwa])
HSP 1 Score: 224 bits (571), Expect = 3.99e-71
Identity = 116/126 (92.06%), Postives = 118/126 (93.65%), Query Frame = 0
Query: 56 DAPVSDHAQENSSTEGVFVPTPGLQHTSTFEPGPSLYSSLVQSPTPHSTSSSLKNDPASP 115
D D E+SSTEGVFVPTP LQHTSTFEPGPSLYSSLVQSPTPHSTSSSLKNDPASP
Sbjct: 90 DIDFDDLNDESSSTEGVFVPTPSLQHTSTFEPGPSLYSSLVQSPTPHSTSSSLKNDPASP 149
Query: 116 PADETAALERGTDVHNDDDELDPVIPKVNTCEIPVDVDVDNTLAAPTESPAFPEISRPAK 175
PADETAALERGTDVHNDDDELDPVIPKVNTCEIPVDVDVDNTLAAPTESPAFP+ISRPAK
Sbjct: 150 PADETAALERGTDVHNDDDELDPVIPKVNTCEIPVDVDVDNTLAAPTESPAFPKISRPAK 209
Query: 176 KKLQQN 181
KKLQQN
Sbjct: 210 KKLQQN 215
BLAST of IVF0020458 vs. NCBI nr
Match:
KAA0050594.1 (envelope-like protein [Cucumis melo var. makuwa] >TYK07846.1 envelope-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 215 bits (547), Expect = 4.16e-67
Identity = 135/242 (55.79%), Postives = 145/242 (59.92%), Query Frame = 0
Query: 1 MVNTRKGSYAAKSSEDDLEARISSPSI------------TQLRRPYCLSFKKSQ------ 60
MV TR GS+A K E+DLEARISS S+ T RRPY LSF+KSQ
Sbjct: 1 MVKTRNGSFATKPFEEDLEARISSLSMHNVRMRGRRFKSTPQRRPYRLSFEKSQANVLVN 60
Query: 61 -----------------------------------------------KTFVSDVAVERPI 120
KT V DVAVERPI
Sbjct: 61 LHELVSEKVVYRDTATIAKYPPGALEAHMSNMDSNDLDDVPLARLLKKTSVPDVAVERPI 120
Query: 121 DAPVSDHAQENSSTEGVFVPTPGLQHTSTFEPGPSLYSSLVQSPTPHSTSSSLKNDPASP 177
D PVSDH QE+SSTEGV VPTPGLQHT T EPGPS YSSLV+SP P++TSS L ND AS
Sbjct: 121 DPPVSDHFQESSSTEGVLVPTPGLQHTFTLEPGPSFYSSLVRSPAPNTTSSGLNNDHASQ 180
BLAST of IVF0020458 vs. NCBI nr
Match:
KAA0060580.1 (envelope-like protein [Cucumis melo var. makuwa] >TYK02291.1 envelope-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 202 bits (513), Expect = 5.24e-62
Identity = 129/238 (54.20%), Postives = 143/238 (60.08%), Query Frame = 0
Query: 1 MVNTRKGSYAAKSSEDDLEARISSPSITQLR------------RPYCLSFKKSQ------ 60
MVNTRKGSYAAKSSEDDLEARISSP + +R RPY LS +KSQ
Sbjct: 1 MVNTRKGSYAAKSSEDDLEARISSPPMHNVRIKGHRFKSTPPQRPYRLSSEKSQANVSTN 60
Query: 61 -----------------------------------------------KTFVSDVAVERPI 120
KT + DVAVERPI
Sbjct: 61 LHEPVPKKVVSRDRATIAEHDPGAPATHMFDMDSDDLDDVPLARLLKKTSIPDVAVERPI 120
Query: 121 DAPVSDHAQENSSTEGVFVPTPGLQHTSTFEPGPSLYSSLVQSPTPHSTSSSLKNDPASP 171
D VSDH++ENSS EGVFVPTP LQH ST EPG SLYSS VQS TP++TSS L ND ASP
Sbjct: 121 DPHVSDHSKENSSPEGVFVPTPNLQHISTVEPGSSLYSSPVQSSTPNTTSSGLNNDTASP 180
BLAST of IVF0020458 vs. NCBI nr
Match:
KAA0053124.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ95499.1 putative gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 181 bits (458), Expect = 1.96e-50
Identity = 98/136 (72.06%), Postives = 110/136 (80.88%), Query Frame = 0
Query: 42 QKTFVSDVAVERPIDAPVSDHAQENSSTEGVFVPTPGLQHTSTFEPGPSLYSSLVQSPTP 101
+KT +++V VERPID VS+H+QE+SSTEGVFVPT GLQH ST E GPSLYSSLV+SPTP
Sbjct: 422 KKTSITNVVVERPIDPLVSNHSQESSSTEGVFVPTSGLQHISTVESGPSLYSSLVRSPTP 481
Query: 102 HSTSSSLKNDPASPPADETAALERGTDVHNDDDELDPVIPKVNTCEIPVDVDVDNTLAAP 161
+ TSSS NDP SPPADET A E G DVHNDDDELDPVI +VNT +IP DV+VDNT A P
Sbjct: 482 NPTSSSQNNDPTSPPADETVAPEEGIDVHNDDDELDPVILEVNTGDIPFDVNVDNTSATP 541
Query: 162 TESPAFPEISRPAKKK 177
TES AF E SR KKK
Sbjct: 542 TESSAFSEESRRVKKK 557
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3C2V7 | 4.9e-78 | 88.40 | Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68... | [more] |
| A0A5A7TVL3 | 2.0e-55 | 92.06 | Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... | [more] |
| A0A5A7U5S6 | 9.4e-53 | 55.79 | Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold17... | [more] |
| A0A5A7UZP9 | 8.2e-49 | 54.20 | Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18... | [more] |
| A0A5A7UCZ0 | 2.0e-42 | 72.06 | Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| TYK04776.1 | 2.42e-101 | 88.40 | envelope-like protein [Cucumis melo var. makuwa] | [more] |
| KAA0047004.1 | 3.99e-71 | 92.06 | putative mitochondrial protein [Cucumis melo var. makuwa] | [more] |
| KAA0050594.1 | 4.16e-67 | 55.79 | envelope-like protein [Cucumis melo var. makuwa] >TYK07846.1 envelope-like prote... | [more] |
| KAA0060580.1 | 5.24e-62 | 54.20 | envelope-like protein [Cucumis melo var. makuwa] >TYK02291.1 envelope-like prote... | [more] |
| KAA0053124.1 | 1.96e-50 | 72.06 | putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ95499.1 putative gag... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
