IVF0020416 (gene) Melon (IVF77) v1

Overview
NameIVF0020416
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionB3 domain-containing transcription factor LEC2
Locationchr08: 1853358 .. 1853738 (+)
RNA-Seq ExpressionIVF0020416
SyntenyIVF0020416
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAAATTACAAGCAGAAGCAGCTGCAACAATTTAGTTTGTCGTCAAATATAGATGATCAGGTTAAAGACGAAGAAGAAGATGCTTCTTTGGCTTTGTTGATCGAAGAGCTTAAACACAAAGCTGAAGACCACCACAGCCATCCCCCGCCCTATTTCGCTACTAATCTACCCAACAATGCTATGATTCATTCCACAAATAATATCAATTATAAGGAACAAGTAATATTAGATGATTTCCAAGGGATTAATAATGATAATAATAATGGTAATGTGGGGTTTGAAGATTGCTTTGGAGGCCTTGATACTCTTCCTGAAGTCAGTGGATTCAAGTTCCCTCTTTTTGACTATTTCCCCGGTAATAATGGCACAACCTGA

mRNA sequence

ATGGAAGAAAATTACAAGCAGAAGCAGCTGCAACAATTTAGTTTGTCGTCAAATATAGATGATCAGGTTAAAGACGAAGAAGAAGATGCTTCTTTGGCTTTGTTGATCGAAGAGCTTAAACACAAAGCTGAAGACCACCACAGCCATCCCCCGCCCTATTTCGCTACTAATCTACCCAACAATGCTATGATTCATTCCACAAATAATATCAATTATAAGGAACAAGTAATATTAGATGATTTCCAAGGGATTAATAATGATAATAATAATGGTAATGTGGGGTTTGAAGATTGCTTTGGAGGCCTTGATACTCTTCCTGAAGTCAGTGGATTCAAGTTCCCTCTTTTTGACTATTTCCCCGGTAATAATGGCACAACCTGA

Coding sequence (CDS)

ATGGAAGAAAATTACAAGCAGAAGCAGCTGCAACAATTTAGTTTGTCGTCAAATATAGATGATCAGGTTAAAGACGAAGAAGAAGATGCTTCTTTGGCTTTGTTGATCGAAGAGCTTAAACACAAAGCTGAAGACCACCACAGCCATCCCCCGCCCTATTTCGCTACTAATCTACCCAACAATGCTATGATTCATTCCACAAATAATATCAATTATAAGGAACAAGTAATATTAGATGATTTCCAAGGGATTAATAATGATAATAATAATGGTAATGTGGGGTTTGAAGATTGCTTTGGAGGCCTTGATACTCTTCCTGAAGTCAGTGGATTCAAGTTCCCTCTTTTTGACTATTTCCCCGGTAATAATGGCACAACCTGA

Protein sequence

MEENYKQKQLQQFSLSSNIDDQVKDEEEDASLALLIEELKHKAEDHHSHPPPYFATNLPNNAMIHSTNNINYKEQVILDDFQGINNDNNNGNVGFEDCFGGLDTLPEVSGFKFPLFDYFPGNNGTT
Homology
BLAST of IVF0020416 vs. ExPASy TrEMBL
Match: A0A5A7UBY7 (B3 domain-containing transcription factor LEC2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007550 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 3.3e-65
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0

Query: 1   MEENYKQKQLQQFSLSSNIDDQVKDEEEDASLALLIEELKHKAEDHHSHPPPYFATNLPN 60
           MEENYKQKQLQQFSLSSNIDDQVKDEEEDASLALLIEELKHKAEDHHSHPPPYFATNLPN
Sbjct: 1   MEENYKQKQLQQFSLSSNIDDQVKDEEEDASLALLIEELKHKAEDHHSHPPPYFATNLPN 60

Query: 61  NAMIHSTNNINYKEQVILDDFQGINNDNNNGNVGFEDCFGGLDTLPEVSGFKFPLFDYFP 120
           NAMIHSTNNINYKEQVILDDFQGINNDNNNGNVGFEDCFGGLDTLPEVSGFKFPLFDYFP
Sbjct: 61  NAMIHSTNNINYKEQVILDDFQGINNDNNNGNVGFEDCFGGLDTLPEVSGFKFPLFDYFP 120

Query: 121 GNNGTT 127
           GNNGTT
Sbjct: 121 GNNGTT 126

BLAST of IVF0020416 vs. ExPASy TrEMBL
Match: A0A0A0KHN2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G517430 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 3.6e-51
Identity = 108/128 (84.38%), Postives = 114/128 (89.06%), Query Frame = 0

Query: 1   MEENYKQKQLQQFSLSSNIDDQVKDEEEDASLALLIEELKHKAEDHHSHPPPYFATNLPN 60
           MEE+YKQKQ QQFSLSSNI+DQVKDEEEDASLALLIEELKHKAEDHHSHP  +F  N P 
Sbjct: 1   MEEDYKQKQQQQFSLSSNIEDQVKDEEEDASLALLIEELKHKAEDHHSHPTTFFTANPPI 60

Query: 61  NAMIHSTNNINYKEQVILDDFQG---INNDNNNGNVGFEDCFGGLDTLPEVSGFKFPLFD 120
           N MI+STN+INYKEQ+ILDDFQG   INND NNGNVGFEDCFGGLDTLPEVSGFKFPLFD
Sbjct: 61  NTMINSTNHINYKEQLILDDFQGINNINNDINNGNVGFEDCFGGLDTLPEVSGFKFPLFD 120

Query: 121 YFPGNNGT 126
           YF  NNGT
Sbjct: 121 YFTSNNGT 128

BLAST of IVF0020416 vs. ExPASy TrEMBL
Match: A0A6J1IU08 (B3 domain-containing transcription factor LEC2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478581 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 4.3e-12
Identity = 56/125 (44.80%), Postives = 68/125 (54.40%), Query Frame = 0

Query: 23  VKDEEEDASLALLIEELKHKAEDHH-------SHPPPYFATNLPNNAMIHSTNNINYKEQ 82
           +KDEEEDASLA+LIEELKHK ED         S      ++N  NNA++ S + ++  +Q
Sbjct: 167 IKDEEEDASLAMLIEELKHKPEDEDRPLSCSTSTSSSNSSSNNNNNAVMASDSYLSTTQQ 226

Query: 83  VILDD-------FQGINNDNNNGNV---------------GFEDCFGGLDTLPEVSGFKF 119
                        +GI+N NNN                  G EDCF GLDTLPEVSGFKF
Sbjct: 227 QPSSSNMMGAAAAKGIHNSNNNKKKKNGSKEGGEDLQAVNGLEDCFRGLDTLPEVSGFKF 286

BLAST of IVF0020416 vs. ExPASy TrEMBL
Match: A0A6J1IQY4 (B3 domain-containing transcription factor LEC2 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478581 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 4.3e-12
Identity = 56/125 (44.80%), Postives = 68/125 (54.40%), Query Frame = 0

Query: 23  VKDEEEDASLALLIEELKHKAEDHH-------SHPPPYFATNLPNNAMIHSTNNINYKEQ 82
           +KDEEEDASLA+LIEELKHK ED         S      ++N  NNA++ S + ++  +Q
Sbjct: 318 IKDEEEDASLAMLIEELKHKPEDEDRPLSCSTSTSSSNSSSNNNNNAVMASDSYLSTTQQ 377

Query: 83  VILDD-------FQGINNDNNNGNV---------------GFEDCFGGLDTLPEVSGFKF 119
                        +GI+N NNN                  G EDCF GLDTLPEVSGFKF
Sbjct: 378 QPSSSNMMGAAAAKGIHNSNNNKKKKNGSKEGGEDLQAVNGLEDCFRGLDTLPEVSGFKF 437

BLAST of IVF0020416 vs. ExPASy TrEMBL
Match: A0A6J1EJR4 (B3 domain-containing transcription factor LEC2 OS=Cucurbita moschata OX=3662 GN=LOC111433235 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 4.3e-12
Identity = 61/144 (42.36%), Postives = 73/144 (50.69%), Query Frame = 0

Query: 3   ENYKQKQLQQFSLSSNIDDQVKDEEEDASLALLIEELKHKAEDH--------HSHPPPYF 62
           +N   K  QQ S ++     +KDEEEDASLA+LIEELKHK ED          +      
Sbjct: 307 KNNNNKNNQQCSFTNMC---IKDEEEDASLAMLIEELKHKPEDEDRPLSCSSSTSSSSNS 366

Query: 63  ATNLPNNAMIHSTNNINYKEQVILDDFQGI----------NNDNNNGNV----------G 119
           + N  NNA++ S + ++   Q    D  G           NN   NGN           G
Sbjct: 367 SHNNNNNALMASDSYLSTTPQPSSSDMMGAAAKGIYNSINNNKKKNGNKEGGEDLQAGNG 426

BLAST of IVF0020416 vs. NCBI nr
Match: KAA0052680.1 (B3 domain-containing transcription factor LEC2 [Cucumis melo var. makuwa] >TYK13144.1 B3 domain-containing transcription factor LEC2 [Cucumis melo var. makuwa])

HSP 1 Score: 255 bits (651), Expect = 1.50e-85
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0

Query: 1   MEENYKQKQLQQFSLSSNIDDQVKDEEEDASLALLIEELKHKAEDHHSHPPPYFATNLPN 60
           MEENYKQKQLQQFSLSSNIDDQVKDEEEDASLALLIEELKHKAEDHHSHPPPYFATNLPN
Sbjct: 1   MEENYKQKQLQQFSLSSNIDDQVKDEEEDASLALLIEELKHKAEDHHSHPPPYFATNLPN 60

Query: 61  NAMIHSTNNINYKEQVILDDFQGINNDNNNGNVGFEDCFGGLDTLPEVSGFKFPLFDYFP 120
           NAMIHSTNNINYKEQVILDDFQGINNDNNNGNVGFEDCFGGLDTLPEVSGFKFPLFDYFP
Sbjct: 61  NAMIHSTNNINYKEQVILDDFQGINNDNNNGNVGFEDCFGGLDTLPEVSGFKFPLFDYFP 120

Query: 121 GNNGTT 126
           GNNGTT
Sbjct: 121 GNNGTT 126

BLAST of IVF0020416 vs. NCBI nr
Match: KGN49235.1 (hypothetical protein Csa_002728 [Cucumis sativus])

HSP 1 Score: 208 bits (530), Expect = 4.69e-67
Identity = 108/128 (84.38%), Postives = 114/128 (89.06%), Query Frame = 0

Query: 1   MEENYKQKQLQQFSLSSNIDDQVKDEEEDASLALLIEELKHKAEDHHSHPPPYFATNLPN 60
           MEE+YKQKQ QQFSLSSNI+DQVKDEEEDASLALLIEELKHKAEDHHSHP  +F  N P 
Sbjct: 1   MEEDYKQKQQQQFSLSSNIEDQVKDEEEDASLALLIEELKHKAEDHHSHPTTFFTANPPI 60

Query: 61  NAMIHSTNNINYKEQVILDDFQGINNDNN---NGNVGFEDCFGGLDTLPEVSGFKFPLFD 120
           N MI+STN+INYKEQ+ILDDFQGINN NN   NGNVGFEDCFGGLDTLPEVSGFKFPLFD
Sbjct: 61  NTMINSTNHINYKEQLILDDFQGINNINNDINNGNVGFEDCFGGLDTLPEVSGFKFPLFD 120

Query: 121 YFPGNNGT 125
           YF  NNGT
Sbjct: 121 YFTSNNGT 128

BLAST of IVF0020416 vs. NCBI nr
Match: XP_011658520.1 (B3 domain-containing transcription factor LEC2 [Cucumis sativus])

HSP 1 Score: 208 bits (530), Expect = 2.47e-63
Identity = 108/128 (84.38%), Postives = 114/128 (89.06%), Query Frame = 0

Query: 1   MEENYKQKQLQQFSLSSNIDDQVKDEEEDASLALLIEELKHKAEDHHSHPPPYFATNLPN 60
           MEE+YKQKQ QQFSLSSNI+DQVKDEEEDASLALLIEELKHKAEDHHSHP  +F  N P 
Sbjct: 287 MEEDYKQKQQQQFSLSSNIEDQVKDEEEDASLALLIEELKHKAEDHHSHPTTFFTANPPI 346

Query: 61  NAMIHSTNNINYKEQVILDDFQGINNDNN---NGNVGFEDCFGGLDTLPEVSGFKFPLFD 120
           N MI+STN+INYKEQ+ILDDFQGINN NN   NGNVGFEDCFGGLDTLPEVSGFKFPLFD
Sbjct: 347 NTMINSTNHINYKEQLILDDFQGINNINNDINNGNVGFEDCFGGLDTLPEVSGFKFPLFD 406

Query: 121 YFPGNNGT 125
           YF  NNGT
Sbjct: 407 YFTSNNGT 414

BLAST of IVF0020416 vs. NCBI nr
Match: KAG7034599.1 (B3 domain-containing transcription factor LEC2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 81.6 bits (200), Expect = 4.11e-15
Identity = 59/128 (46.09%), Postives = 69/128 (53.91%), Query Frame = 0

Query: 23  VKDEEEDASLALLIEELKHKAEDHH-----------SHPPPYFATNLPNNAMIHSTNNIN 82
           +KDEEEDASLA+LIEELKHK ED             S+   +   N  NNA++ S + ++
Sbjct: 331 IKDEEEDASLAMLIEELKHKPEDEDRRLSCSTSTSSSNSSHHNNNNNNNNALMASDSYLS 390

Query: 83  YKEQVILDDFQG---------INNDNN--NGNV----------GFEDCFGGLDTLPEVSG 118
              Q    D  G         INN+N   NGN           G EDCF GLDTLPEVSG
Sbjct: 391 TTPQPSSSDMMGAAAKGIYNSINNNNKKKNGNKEGGEDLQAGNGLEDCFRGLDTLPEVSG 450

BLAST of IVF0020416 vs. NCBI nr
Match: KAG6604454.1 (B3 domain-containing transcription factor LEC2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 81.3 bits (199), Expect = 5.44e-15
Identity = 58/126 (46.03%), Postives = 67/126 (53.17%), Query Frame = 0

Query: 23  VKDEEEDASLALLIEELKHKAEDHHSHPPPYFATNLPNNAMIHSTNN---------INYK 82
           +KDEEEDASLA+LIEELKHK ED         +T+  +N+  H  NN         ++  
Sbjct: 316 IKDEEEDASLAMLIEELKHKPEDEDRRLSCSTSTSSSSNSSHHHNNNNALMASDSYLSTT 375

Query: 83  EQVILDDFQG---------INNDNN--NGNV----------GFEDCFGGLDTLPEVSGFK 118
            Q    D  G         INN+N   NGN           G EDCF GLDTLPEVSGFK
Sbjct: 376 PQPSSSDMMGAAAKGIYNSINNNNKKKNGNKEGGEDLQAGNGLEDCFRGLDTLPEVSGFK 435

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UBY73.3e-65100.00B3 domain-containing transcription factor LEC2 OS=Cucumis melo var. makuwa OX=11... [more]
A0A0A0KHN23.6e-5184.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G517430 PE=4 SV=1[more]
A0A6J1IU084.3e-1244.80B3 domain-containing transcription factor LEC2 isoform X2 OS=Cucurbita maxima OX... [more]
A0A6J1IQY44.3e-1244.80B3 domain-containing transcription factor LEC2 isoform X1 OS=Cucurbita maxima OX... [more]
A0A6J1EJR44.3e-1242.36B3 domain-containing transcription factor LEC2 OS=Cucurbita moschata OX=3662 GN=... [more]
Match NameE-valueIdentityDescription
KAA0052680.11.50e-85100.00B3 domain-containing transcription factor LEC2 [Cucumis melo var. makuwa] >TYK13... [more]
KGN49235.14.69e-6784.38hypothetical protein Csa_002728 [Cucumis sativus][more]
XP_011658520.12.47e-6384.38B3 domain-containing transcription factor LEC2 [Cucumis sativus][more]
KAG7034599.14.11e-1546.09B3 domain-containing transcription factor LEC2, partial [Cucurbita argyrosperma ... [more]
KAG6604454.15.44e-1546.03B3 domain-containing transcription factor LEC2, partial [Cucurbita argyrosperma ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0020416.1IVF0020416.1mRNA