IVF0020037 (gene) Melon (IVF77) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GAAAAGGTAAAGCCCTAATTTATATGGGGATTAGGTAATTGAGTGGTTACCCAACTCCTTGAGTAGGAGGAAACAAATTTTATAGCGAGGAAGAAGGAAGGGGAGAAAATGGCACTGGACGGTAGCGGCAATGGAGATGACTTCTCTGTAGGATCTTTCTTCTCCATTAAGACCACCTTAGGAGATGAATTTCAAGGACAAGTCATTACCTTTGACCGCCCCTCCAACATCCTCGTCCTTCATATCCTTTCTCCATTTCTAATTTTTCTTTTTGTCTTTCTTTTTTTCTTGAATTCCTTGACTGTCTCTTTCTTCTGTTGTTATTTTTGTGATTTGATACAGGAGGGTTCTAAGCCAGGACCTCGTAGGAACATAAGGCTGCTGAAGGCCAATTATATTAAGGAATTTTCGTTTTTGGGACATGGCGAAGATCCTCTTGATCTCAAAAACTGTTACCTCGATCTCAATACTCTCCGTGCCCGAGAAGAACTAGCTATTAGGTTTTTGTTTTTCAATAACCTATTATCTTTCTCTATATTTGGTAGATGTTTTAATTGATTTGATTTTTTTTCAGGCAAGCTGAGGCCGAAGCGGAGAGGATAGGAGTGGGTGTCACTAGCGAGGCTCAAAGTATTTTTGATGCCCTATCTAAAACGTAATAAATTTAGGGCATCTAAAACGTAATAAATTTATGGTTTTGCAGCCTTTAATGCCATGTCAATTGGACTTTAAAATTTATGTTACATAGTTGGATCATGTTGAAGTGAAAATTGGACCATGAATATTGTATACGATGTTGAAGGATTGGGTAATTGGAACATAACATAATAGCTGGCCTAACCTGTGCATGGTCATGGTTGTCACTTGGGAAGCTGTTTTCATTTATGCAACTATTTAGAAGGTTTAGAAAAAAAAATAGTTTATGATTTTAAGAATTTAATTTTGTAGTAATCCTAAACTTTTCTATTCTATAGTAAAATAATTTATTTACATCATATGAAAATGATAGTTGCAAACCCAAGTATGCCCGTCGGATTATATGATTTTATGAGGTATGCAGATGTTTATGCTACTTGAATGAGACACAAAGTGATAGAATTTCATTTTAAGTTCCTAATACATCATTCATAATTTTTTAGTATGCATCTTGTTTTCACATTTTAACTAATGATACTAGGCTTCCTGTTCGTTGGGACAAGACTGTCATAGTTGTAATGAATGAAGTACGTGTTAACAGTCCTTACCTACCAGACTCTGTTTCCGGAGGCACCCCTGCTGCCAATGAGCGTGTGAAGAAAGTGGTATGAATGTTTGATATATATTTAAAAACTCCATTACTAGTTTTCACGCACAAACTGACCTTATCTTTTTTTCTAAAAGCTTGAATTGGAGAGGAAGCGATTACAAGTTCGTGGTGGTCAGTGATGGTTATTCATCCCTATCCTTCTTTTCTGGGTGACAAGCTAATTGAGCTAAGGTATAACCCCGGCATCTCAGTGTCAGCAATCCCAAGGAATTTGGTGTTTGAGTGGTAACCTAGTTGAATTTTGGTGTTTGAGTGGTAACCTAGTTGAATTTAGTGTTGCCAAAGTTTTTTTTGTTTATTAGTTTATGTAGTTGATTTTCTCCCGTTTATGGACTGCACTGCATTGGACAAACTTTTTGGGTCCATATTTAAAGTTTCCCAGATTTGCTCTATTGCAAGTATGAAACCTGAACAAATTCAAATGTAATAACTGTCCTTATTTCATTTGGTCCTGATGTATTTGGAAAATTAAGTTTTGAAATAATTGACTCAACCATCTAATGACCTAACATTGATATTGTTTGGGGCATAAGATTGCTCTTATAGTTGTTATTTGCCATGTCTTTCAATCTGGAGTTTGTGAAATTACATTTTGACATTCTGGGCATCTTTGAGAAAGGTCATGGGC GAAAAGGTAAAGCCCTAATTTATATGGGGATTAGGTAATTGAGTGGTTACCCAACTCCTTGAGTAGGAGGAAACAAATTTTATAGCGAGGAAGAAGGAAGGGGAGAAAATGGCACTGGACGGTAGCGGCAATGGAGATGACTTCTCTGTAGGATCTTTCTTCTCCATTAAGACCACCTTAGGAGATGAATTTCAAGGACAAGTCATTACCTTTGACCGCCCCTCCAACATCCTCGTCCTTCATATCCTTTCTCCATTTCTAATTTTTCTTTTTGTCTTTCTTTTTTTCTTGAATTCCTTGACTGTCTCTTTCTTCTGTTGTTATTTTTGTGATTTGATACAGGAGGGTTCTAAGCCAGGACCTCGTAGGAACATAAGGCTGCTGAAGGCCAATTATATTAAGGAATTTTCGTTTTTGGGACATGGCGAAGATCCTCTTGATCTCAAAAACTGTTACCTCGATCTCAATACTCTCCGTGCCCGAGAAGAACTAGCTATTAGGCAAGCTGAGGCCGAAGCGGAGAGGATAGGAGTGGGTGTCACTAGCGAGGCTCAAAGTATTTTTGATGCCCTATCTAAAACGCTTCCTGTTCGTTGGGACAAGACTGTCATAGTTGTAATGAATGAAGTACGTGTTAACAGTCCTTACCTACCAGACTCTGTTTCCGGAGGCACCCCTGCTGCCAATGAGCGTGTGAAGAAAGTGCTTGAATTGGAGAGGAAGCGATTACAAGTTCGTGGTGGTCAGTGATGGTTATTCATCCCTATCCTTCTTTTCTGGGTGACAAGCTAATTGAGCTAAGGTATAACCCCGGCATCTCAGTGTCAGCAATCCCAAGGAATTTGGTGTTTGAGTGGTAACCTAGTTGAATTTTGGTGTTTGAGTGGTAACCTAGTTGAATTTAGTGTTGCCAAAGTTTTTTTTGTTTATTAGTTTATGTAGTTGATTTTCTCCCGTTTATGGACTGCACTGCATTGGACAAACTTTTTGGGTCCATATTTAAAGTTTCCCAGATTTGCTCTATTGCAAGTATGAAACCTGAACAAATTCAAATGTAATAACTGTCCTTATTTCATTTGGTCCTGATGTATTTGGAAAATTAAGTTTTGAAATAATTGACTCAACCATCTAATGACCTAACATTGATATTGTTTGGGGCATAAGATTGCTCTTATAGTTGTTATTTGCCATGTCTTTCAATCTGGAGTTTGTGAAATTACATTTTGACATTCTGGGCATCTTTGAGAAAGGTCATGGGC ATGGCACTGGACGGTAGCGGCAATGGAGATGACTTCTCTGTAGGATCTTTCTTCTCCATTAAGACCACCTTAGGAGATGAATTTCAAGGACAAGTCATTACCTTTGACCGCCCCTCCAACATCCTCGTCCTTCATATCCTTTCTCCATTTCTAATTTTTCTTTTTGTCTTTCTTTTTTTCTTGAATTCCTTGACTGTCTCTTTCTTCTGTTGTTATTTTTGTGATTTGATACAGGAGGGTTCTAAGCCAGGACCTCGTAGGAACATAAGGCTGCTGAAGGCCAATTATATTAAGGAATTTTCGTTTTTGGGACATGGCGAAGATCCTCTTGATCTCAAAAACTGTTACCTCGATCTCAATACTCTCCGTGCCCGAGAAGAACTAGCTATTAGGCAAGCTGAGGCCGAAGCGGAGAGGATAGGAGTGGGTGTCACTAGCGAGGCTCAAAGTATTTTTGATGCCCTATCTAAAACGCTTCCTGTTCGTTGGGACAAGACTGTCATAGTTGTAATGAATGAAGTACGTGTTAACAGTCCTTACCTACCAGACTCTGTTTCCGGAGGCACCCCTGCTGCCAATGAGCGTGTGAAGAAAGTGCTTGAATTGGAGAGGAAGCGATTACAAGTTCGTGGTGGTCAGTGA MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVLELERKRLQVRGGQ Homology
BLAST of IVF0020037 vs. ExPASy Swiss-Prot
Match: Q6PBA2 (Protein LSM12 homolog A OS=Danio rerio OX=7955 GN=lsm12a PE=2 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 7.7e-11 Identity = 54/197 (27.41%), Postives = 86/197 (43.65%), Query Frame = 0
BLAST of IVF0020037 vs. ExPASy Swiss-Prot
Match: Q6NSN1 (Protein LSM12 homolog B OS=Danio rerio OX=7955 GN=lsm12b PE=2 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 1.3e-10 Identity = 54/197 (27.41%), Postives = 84/197 (42.64%), Query Frame = 0
BLAST of IVF0020037 vs. ExPASy Swiss-Prot
Match: Q0VCF9 (Protein LSM12 homolog OS=Bos taurus OX=9913 GN=LSM12 PE=2 SV=2) HSP 1 Score: 62.4 bits (150), Expect = 7.2e-09 Identity = 53/195 (27.18%), Postives = 81/195 (41.54%), Query Frame = 0
BLAST of IVF0020037 vs. ExPASy Swiss-Prot
Match: Q5ZML5 (Protein LSM12 homolog OS=Gallus gallus OX=9031 GN=LSM12 PE=2 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 7.2e-09 Identity = 52/195 (26.67%), Postives = 83/195 (42.56%), Query Frame = 0
BLAST of IVF0020037 vs. ExPASy Swiss-Prot
Match: Q3MHD2 (Protein LSM12 homolog OS=Homo sapiens OX=9606 GN=LSM12 PE=1 SV=2) HSP 1 Score: 62.4 bits (150), Expect = 7.2e-09 Identity = 53/195 (27.18%), Postives = 81/195 (41.54%), Query Frame = 0
BLAST of IVF0020037 vs. ExPASy TrEMBL
Match: A0A5A7SWT7 (Protein LSM12-like protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G003390 PE=3 SV=1) HSP 1 Score: 333.6 bits (854), Expect = 6.2e-88 Identity = 177/213 (83.10%), Postives = 177/213 (83.10%), Query Frame = 0
BLAST of IVF0020037 vs. ExPASy TrEMBL
Match: A0A1S3BGE7 (protein LSM12 homolog A OS=Cucumis melo OX=3656 GN=LOC103489557 PE=3 SV=1) HSP 1 Score: 333.2 bits (853), Expect = 8.1e-88 Identity = 182/213 (85.45%), Postives = 186/213 (87.32%), Query Frame = 0
BLAST of IVF0020037 vs. ExPASy TrEMBL
Match: A0A0A0KQA9 (AD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G603270 PE=3 SV=1) HSP 1 Score: 332.0 bits (850), Expect = 1.8e-87 Identity = 176/212 (83.02%), Postives = 178/212 (83.96%), Query Frame = 0
BLAST of IVF0020037 vs. ExPASy TrEMBL
Match: A0A5D3CUL6 (Protein LSM12-like protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00770 PE=3 SV=1) HSP 1 Score: 329.7 bits (844), Expect = 8.9e-87 Identity = 175/211 (82.94%), Postives = 175/211 (82.94%), Query Frame = 0
BLAST of IVF0020037 vs. ExPASy TrEMBL
Match: A0A6J1GZX6 (protein LSM12 homolog A OS=Cucurbita moschata OX=3662 GN=LOC111458358 PE=3 SV=1) HSP 1 Score: 323.6 bits (828), Expect = 6.4e-85 Identity = 174/212 (82.08%), Postives = 176/212 (83.02%), Query Frame = 0
BLAST of IVF0020037 vs. NCBI nr
Match: XP_008447009.1 (PREDICTED: protein LSM12 homolog A [Cucumis melo]) HSP 1 Score: 338 bits (866), Expect = 1.12e-115 Identity = 180/213 (84.51%), Postives = 185/213 (86.85%), Query Frame = 0
BLAST of IVF0020037 vs. NCBI nr
Match: KAA0034336.1 (protein LSM12-like protein A [Cucumis melo var. makuwa]) HSP 1 Score: 333 bits (855), Expect = 2.28e-114 Identity = 177/213 (83.10%), Postives = 177/213 (83.10%), Query Frame = 0
BLAST of IVF0020037 vs. NCBI nr
Match: XP_038892233.1 (protein LSM12 homolog A-like [Benincasa hispida]) HSP 1 Score: 332 bits (852), Expect = 7.53e-114 Identity = 176/211 (83.41%), Postives = 178/211 (84.36%), Query Frame = 0
BLAST of IVF0020037 vs. NCBI nr
Match: XP_004135229.1 (protein LSM12 homolog A [Cucumis sativus]) HSP 1 Score: 332 bits (852), Expect = 7.53e-114 Identity = 176/212 (83.02%), Postives = 178/212 (83.96%), Query Frame = 0
BLAST of IVF0020037 vs. NCBI nr
Match: TYK15583.1 (protein LSM12-like protein A [Cucumis melo var. makuwa]) HSP 1 Score: 330 bits (845), Expect = 1.08e-112 Identity = 175/211 (82.94%), Postives = 175/211 (82.94%), Query Frame = 0
BLAST of IVF0020037 vs. TAIR 10
Match: AT1G24050.1 (RNA-processing, Lsm domain ) HSP 1 Score: 189.5 bits (480), Expect = 2.8e-48 Identity = 108/207 (52.17%), Postives = 136/207 (65.70%), Query Frame = 0
BLAST of IVF0020037 vs. TAIR 10
Match: AT1G70220.1 (RNA-processing, Lsm domain ) HSP 1 Score: 131.0 bits (328), Expect = 1.2e-30 Identity = 88/218 (40.37%), Postives = 125/218 (57.34%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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