IVF0020037 (gene) Melon (IVF77) v1

Overview


Name	IVF0020037
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	AD domain-containing protein
Location	chr10: 2943383 .. 2945316 (-)
RNA-Seq Expression	IVF0020037
Synteny	IVF0020037

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAGGTAAAGCCCTAATTTATATGGGGATTAGGTAATTGAGTGGTTACCCAACTCCTTGAGTAGGAGGAAACAAATTTTATAGCGAGGAAGAAGGAAGGGGAGAAAATGGCACTGGACGGTAGCGGCAATGGAGATGACTTCTCTGTAGGATCTTTCTTCTCCATTAAGACCACCTTAGGAGATGAATTTCAAGGACAAGTCATTACCTTTGACCGCCCCTCCAACATCCTCGTCCTTCATATCCTTTCTCCATTTCTAATTTTTCTTTTTGTCTTTCTTTTTTTCTTGAATTCCTTGACTGTCTCTTTCTTCTGTTGTTATTTTTGTGATTTGATACAGGAGGGTTCTAAGCCAGGACCTCGTAGGAACATAAGGCTGCTGAAGGCCAATTATATTAAGGAATTTTCGTTTTTGGGACATGGCGAAGATCCTCTTGATCTCAAAAACTGTTACCTCGATCTCAATACTCTCCGTGCCCGAGAAGAACTAGCTATTAGGTTTTTGTTTTTCAATAACCTATTATCTTTCTCTATATTTGGTAGATGTTTTAATTGATTTGATTTTTTTTCAGGCAAGCTGAGGCCGAAGCGGAGAGGATAGGAGTGGGTGTCACTAGCGAGGCTCAAAGTATTTTTGATGCCCTATCTAAAACGTAATAAATTTAGGGCATCTAAAACGTAATAAATTTATGGTTTTGCAGCCTTTAATGCCATGTCAATTGGACTTTAAAATTTATGTTACATAGTTGGATCATGTTGAAGTGAAAATTGGACCATGAATATTGTATACGATGTTGAAGGATTGGGTAATTGGAACATAACATAATAGCTGGCCTAACCTGTGCATGGTCATGGTTGTCACTTGGGAAGCTGTTTTCATTTATGCAACTATTTAGAAGGTTTAGAAAAAAAAATAGTTTATGATTTTAAGAATTTAATTTTGTAGTAATCCTAAACTTTTCTATTCTATAGTAAAATAATTTATTTACATCATATGAAAATGATAGTTGCAAACCCAAGTATGCCCGTCGGATTATATGATTTTATGAGGTATGCAGATGTTTATGCTACTTGAATGAGACACAAAGTGATAGAATTTCATTTTAAGTTCCTAATACATCATTCATAATTTTTTAGTATGCATCTTGTTTTCACATTTTAACTAATGATACTAGGCTTCCTGTTCGTTGGGACAAGACTGTCATAGTTGTAATGAATGAAGTACGTGTTAACAGTCCTTACCTACCAGACTCTGTTTCCGGAGGCACCCCTGCTGCCAATGAGCGTGTGAAGAAAGTGGTATGAATGTTTGATATATATTTAAAAACTCCATTACTAGTTTTCACGCACAAACTGACCTTATCTTTTTTTCTAAAAGCTTGAATTGGAGAGGAAGCGATTACAAGTTCGTGGTGGTCAGTGATGGTTATTCATCCCTATCCTTCTTTTCTGGGTGACAAGCTAATTGAGCTAAGGTATAACCCCGGCATCTCAGTGTCAGCAATCCCAAGGAATTTGGTGTTTGAGTGGTAACCTAGTTGAATTTTGGTGTTTGAGTGGTAACCTAGTTGAATTTAGTGTTGCCAAAGTTTTTTTTGTTTATTAGTTTATGTAGTTGATTTTCTCCCGTTTATGGACTGCACTGCATTGGACAAACTTTTTGGGTCCATATTTAAAGTTTCCCAGATTTGCTCTATTGCAAGTATGAAACCTGAACAAATTCAAATGTAATAACTGTCCTTATTTCATTTGGTCCTGATGTATTTGGAAAATTAAGTTTTGAAATAATTGACTCAACCATCTAATGACCTAACATTGATATTGTTTGGGGCATAAGATTGCTCTTATAGTTGTTATTTGCCATGTCTTTCAATCTGGAGTTTGTGAAATTACATTTTGACATTCTGGGCATCTTTGAGAAAGGTCATGGGC

mRNA sequence

GAAAAGGTAAAGCCCTAATTTATATGGGGATTAGGTAATTGAGTGGTTACCCAACTCCTTGAGTAGGAGGAAACAAATTTTATAGCGAGGAAGAAGGAAGGGGAGAAAATGGCACTGGACGGTAGCGGCAATGGAGATGACTTCTCTGTAGGATCTTTCTTCTCCATTAAGACCACCTTAGGAGATGAATTTCAAGGACAAGTCATTACCTTTGACCGCCCCTCCAACATCCTCGTCCTTCATATCCTTTCTCCATTTCTAATTTTTCTTTTTGTCTTTCTTTTTTTCTTGAATTCCTTGACTGTCTCTTTCTTCTGTTGTTATTTTTGTGATTTGATACAGGAGGGTTCTAAGCCAGGACCTCGTAGGAACATAAGGCTGCTGAAGGCCAATTATATTAAGGAATTTTCGTTTTTGGGACATGGCGAAGATCCTCTTGATCTCAAAAACTGTTACCTCGATCTCAATACTCTCCGTGCCCGAGAAGAACTAGCTATTAGGCAAGCTGAGGCCGAAGCGGAGAGGATAGGAGTGGGTGTCACTAGCGAGGCTCAAAGTATTTTTGATGCCCTATCTAAAACGCTTCCTGTTCGTTGGGACAAGACTGTCATAGTTGTAATGAATGAAGTACGTGTTAACAGTCCTTACCTACCAGACTCTGTTTCCGGAGGCACCCCTGCTGCCAATGAGCGTGTGAAGAAAGTGCTTGAATTGGAGAGGAAGCGATTACAAGTTCGTGGTGGTCAGTGATGGTTATTCATCCCTATCCTTCTTTTCTGGGTGACAAGCTAATTGAGCTAAGGTATAACCCCGGCATCTCAGTGTCAGCAATCCCAAGGAATTTGGTGTTTGAGTGGTAACCTAGTTGAATTTTGGTGTTTGAGTGGTAACCTAGTTGAATTTAGTGTTGCCAAAGTTTTTTTTGTTTATTAGTTTATGTAGTTGATTTTCTCCCGTTTATGGACTGCACTGCATTGGACAAACTTTTTGGGTCCATATTTAAAGTTTCCCAGATTTGCTCTATTGCAAGTATGAAACCTGAACAAATTCAAATGTAATAACTGTCCTTATTTCATTTGGTCCTGATGTATTTGGAAAATTAAGTTTTGAAATAATTGACTCAACCATCTAATGACCTAACATTGATATTGTTTGGGGCATAAGATTGCTCTTATAGTTGTTATTTGCCATGTCTTTCAATCTGGAGTTTGTGAAATTACATTTTGACATTCTGGGCATCTTTGAGAAAGGTCATGGGC

Coding sequence (CDS)

ATGGCACTGGACGGTAGCGGCAATGGAGATGACTTCTCTGTAGGATCTTTCTTCTCCATTAAGACCACCTTAGGAGATGAATTTCAAGGACAAGTCATTACCTTTGACCGCCCCTCCAACATCCTCGTCCTTCATATCCTTTCTCCATTTCTAATTTTTCTTTTTGTCTTTCTTTTTTTCTTGAATTCCTTGACTGTCTCTTTCTTCTGTTGTTATTTTTGTGATTTGATACAGGAGGGTTCTAAGCCAGGACCTCGTAGGAACATAAGGCTGCTGAAGGCCAATTATATTAAGGAATTTTCGTTTTTGGGACATGGCGAAGATCCTCTTGATCTCAAAAACTGTTACCTCGATCTCAATACTCTCCGTGCCCGAGAAGAACTAGCTATTAGGCAAGCTGAGGCCGAAGCGGAGAGGATAGGAGTGGGTGTCACTAGCGAGGCTCAAAGTATTTTTGATGCCCTATCTAAAACGCTTCCTGTTCGTTGGGACAAGACTGTCATAGTTGTAATGAATGAAGTACGTGTTAACAGTCCTTACCTACCAGACTCTGTTTCCGGAGGCACCCCTGCTGCCAATGAGCGTGTGAAGAAAGTGCTTGAATTGGAGAGGAAGCGATTACAAGTTCGTGGTGGTCAGTGA

Protein sequence

MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVLELERKRLQVRGGQ

Homology

[Close]

BLAST of IVF0020037 vs. ExPASy Swiss-Prot
Match: Q6PBA2 (Protein LSM12 homolog A OS=Danio rerio OX=7955 GN=lsm12a PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.7e-11
Identity = 54/197 (27.41%), Postives = 86/197 (43.65%), Query Frame = 0


Query: 7   GNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTV 66
           G G+ FSVGS  S  T LG   QG+V+ FD PS +L L   S                  
Sbjct: 5   GPGEYFSVGSHVSCLTCLGQRLQGEVVAFDYPSKMLTLKCPS------------------ 64

Query: 67  SFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEFSFLG-HGEDPLDLKNCYLDLNTLRAR 126
                          KP    ++ L+   Y+ E   +    E P  L +  +     RAR
Sbjct: 65  ------------SSGKPN-LSDVILINLAYVSEVDIINDRTETPPPLASLNISKLANRAR 124

Query: 127 EELAIRQAEAEAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVNSPYLPDS 186
            E   + ++A A  I  GV+ E Q +F  + KT+   +W +  I+VM++V ++ PY  ++
Sbjct: 125 TEKEDKLSQAYA--ISAGVSIEGQQLFQTIHKTIKDCKWQEKNIIVMDDVVISPPYQVEN 168

Query: 187 VSGGTPAANERVKKVLE 202
             G   +A   ++K++E
Sbjct: 185 CKGKEGSALSHIRKIVE 168

[Close]

BLAST of IVF0020037 vs. ExPASy Swiss-Prot
Match: Q6NSN1 (Protein LSM12 homolog B OS=Danio rerio OX=7955 GN=lsm12b PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-10
Identity = 54/197 (27.41%), Postives = 84/197 (42.64%), Query Frame = 0


Query: 7   GNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTV 66
           G G+ FSVGS  S  T LG   QG+V+ FD PS +L L                      
Sbjct: 5   GPGEYFSVGSHVSCLTCLGQRLQGEVVAFDYPSKMLTL---------------------- 64

Query: 67  SFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEFSFL-GHGEDPLDLKNCYLDLNTLRAR 126
                          KP    ++ L+   Y+ E   +    E P  L +   +    RAR
Sbjct: 65  --------KCAPSSGKPN-LSDVMLVNLAYVSEVDIITDRAETPPPLASLNFNKLVNRAR 124

Query: 127 EELAIRQAEAEAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVNSPYLPDS 186
            E   + + A A  +  GV+ E Q +F  + KT+   +W +  I+VM++V ++ PY  D+
Sbjct: 125 AEKEDKLSLAYA--VSAGVSVEGQQLFQTIHKTIKECKWQEKNIIVMDDVVISPPYQVDN 168

Query: 187 VSGGTPAANERVKKVLE 202
             G   +A   V+K++E
Sbjct: 185 CKGKEGSALSHVRKIVE 168

[Close]

BLAST of IVF0020037 vs. ExPASy Swiss-Prot
Match: Q0VCF9 (Protein LSM12 homolog OS=Bos taurus OX=9913 GN=LSM12 PE=2 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 7.2e-09
Identity = 53/195 (27.18%), Postives = 81/195 (41.54%), Query Frame = 0


Query: 9   GDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSF 68
           G+ FSVGS  S +T      QG+V+ FD  S +L L   S                    
Sbjct: 6   GEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPS-------------------- 65

Query: 69  FCCYFCDLIQEGSKPGPRRNIRLLKANYIKEFSFLG-HGEDPLDLKNCYLDLNTLRAREE 128
                        KP    +I L+   Y+ E   +    E P  L +  +     +AR E
Sbjct: 66  ----------SSGKPN-HADILLINLQYVSEVEIINDRTETPPPLASLNVSKLASKARTE 125

Query: 129 LAIRQAEAEAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVNSPYLPDSVS 188
              + ++A A  I  GV+ E Q +F  + KT+   +W +  IVVM EV +  PY  ++  
Sbjct: 126 KEEKLSQAYA--ISAGVSLEGQQLFQTIHKTIKDCKWQEKNIVVMEEVVITPPYQVENCK 167

Query: 189 GGTPAANERVKKVLE 202
           G   +A   V+K++E
Sbjct: 186 GKEGSALSHVRKIVE 167

[Close]

BLAST of IVF0020037 vs. ExPASy Swiss-Prot
Match: Q5ZML5 (Protein LSM12 homolog OS=Gallus gallus OX=9031 GN=LSM12 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.2e-09
Identity = 52/195 (26.67%), Postives = 83/195 (42.56%), Query Frame = 0


Query: 9   GDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSF 68
           G+ FSVGS  S +T      QG+V+ FD PS +L L   S                    
Sbjct: 5   GECFSVGSQVSCRTCQEQRLQGEVVAFDYPSKMLALKCPS-------------------- 64

Query: 69  FCCYFCDLIQEGSKPGPRRNIRLLKANYIKEFSFLG-HGEDPLDLKNCYLDLNTLRAREE 128
                        KP    +I L+   Y+ E   +    E P  L +  L+++ L  +  
Sbjct: 65  ----------SSGKPN-HADILLVNLQYVSEVEIINDRTETPPPLAS--LNVSKLANKAR 124

Query: 129 LAIRQAEAEAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVNSPYLPDSVS 188
           +   +  ++A  I  GV+ E Q +F  + KT+   +W +  IVVM EV +  PY  ++  
Sbjct: 125 MEKEEKLSQAYAISAGVSLEGQQLFQTIHKTIKDCKWQEKNIVVMEEVVIAPPYQVENCK 166

Query: 189 GGTPAANERVKKVLE 202
           G   +A   V+K++E
Sbjct: 185 GKEGSALGHVRKIVE 166

[Close]

BLAST of IVF0020037 vs. ExPASy Swiss-Prot
Match: Q3MHD2 (Protein LSM12 homolog OS=Homo sapiens OX=9606 GN=LSM12 PE=1 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 7.2e-09
Identity = 53/195 (27.18%), Postives = 81/195 (41.54%), Query Frame = 0


Query: 9   GDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTVSF 68
           G+ FSVGS  S +T      QG+V+ FD  S +L L   S                    
Sbjct: 6   GEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPS-------------------- 65

Query: 69  FCCYFCDLIQEGSKPGPRRNIRLLKANYIKEFSFLG-HGEDPLDLKNCYLDLNTLRAREE 128
                        KP    +I L+   Y+ E   +    E P  L +  +     +AR E
Sbjct: 66  ----------SSGKPN-HADILLINLQYVSEVEIINDRTETPPPLASLNVSKLASKARTE 125

Query: 129 LAIRQAEAEAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVNSPYLPDSVS 188
              + ++A A  I  GV+ E Q +F  + KT+   +W +  IVVM EV +  PY  ++  
Sbjct: 126 KEEKLSQAYA--ISAGVSLEGQQLFQTIHKTIKDCKWQEKNIVVMEEVVITPPYQVENCK 167

Query: 189 GGTPAANERVKKVLE 202
           G   +A   V+K++E
Sbjct: 186 GKEGSALSHVRKIVE 167

[Close]

BLAST of IVF0020037 vs. ExPASy TrEMBL
Match: A0A5A7SWT7 (Protein LSM12-like protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G003390 PE=3 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 6.2e-88
Identity = 177/213 (83.10%), Postives = 177/213 (83.10%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFF 60
           MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL                  
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL------------------ 60

Query: 61  LNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLN 120
                             EGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLN
Sbjct: 61  ------------------EGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLN 120

Query: 121 TLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPY 180
           TLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPY
Sbjct: 121 TLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPY 177

Query: 181 LPDSVSGGTPAANERVKKVLELERKRLQVRGGQ 214
           LPDSVSGGTPAANERVKKVLELERKRLQVRGGQ
Sbjct: 181 LPDSVSGGTPAANERVKKVLELERKRLQVRGGQ 177

[Close]

BLAST of IVF0020037 vs. ExPASy TrEMBL
Match: A0A1S3BGE7 (protein LSM12 homolog A OS=Cucumis melo OX=3656 GN=LOC103489557 PE=3 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 8.1e-88
Identity = 182/213 (85.45%), Postives = 186/213 (87.32%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFF 60
           MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL   +   F   +  F   
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILTT-LGDEFQGQVITFDRP 60

Query: 61  LNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLN 120
            N L           ++QEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLN
Sbjct: 61  SNIL-----------VLQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLN 120

Query: 121 TLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPY 180
           TLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPY
Sbjct: 121 TLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPY 180

Query: 181 LPDSVSGGTPAANERVKKVLELERKRLQVRGGQ 214
           LPDSVSGGTPAANERVKKVLELERKRLQVRGGQ
Sbjct: 181 LPDSVSGGTPAANERVKKVLELERKRLQVRGGQ 201

[Close]

BLAST of IVF0020037 vs. ExPASy TrEMBL
Match: A0A0A0KQA9 (AD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G603270 PE=3 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.8e-87
Identity = 176/212 (83.02%), Postives = 178/212 (83.96%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFF 60
           MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVL                
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVL---------------- 60

Query: 61  LNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLN 120
                            QEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLN
Sbjct: 61  -----------------QEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLN 120

Query: 121 TLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPY 180
           TLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV+SPY
Sbjct: 121 TLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPY 179

Query: 181 LPDSVSGGTPAANERVKKVLELERKRLQVRGG 213
           LP+SVSGGTPAANERVKKVLE ERKRLQVRGG
Sbjct: 181 LPESVSGGTPAANERVKKVLEWERKRLQVRGG 179

[Close]

BLAST of IVF0020037 vs. ExPASy TrEMBL
Match: A0A5D3CUL6 (Protein LSM12-like protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00770 PE=3 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 8.9e-87
Identity = 175/211 (82.94%), Postives = 175/211 (82.94%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFF 60
           MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL                  
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL------------------ 60

Query: 61  LNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLN 120
                             EGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLN
Sbjct: 61  ------------------EGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLN 120

Query: 121 TLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPY 180
           TLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPY
Sbjct: 121 TLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPY 175

Query: 181 LPDSVSGGTPAANERVKKVLELERKRLQVRG 212
           LPDSVSGGTPAANERVKKVLELERKRLQVRG
Sbjct: 181 LPDSVSGGTPAANERVKKVLELERKRLQVRG 175

[Close]

BLAST of IVF0020037 vs. ExPASy TrEMBL
Match: A0A6J1GZX6 (protein LSM12 homolog A OS=Cucurbita moschata OX=3662 GN=LOC111458358 PE=3 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 6.4e-85
Identity = 174/212 (82.08%), Postives = 176/212 (83.02%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFF 60
           MALD SGNGDDFSVGSFFSIKTTLGDEFQ QVITFDRPSNILVL                
Sbjct: 1   MALD-SGNGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVL---------------- 60

Query: 61  LNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLN 120
                            QEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLN
Sbjct: 61  -----------------QEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLN 120

Query: 121 TLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPY 180
           TLRAREELAIRQAE EAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV+SPY
Sbjct: 121 TLRAREELAIRQAEIEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPY 178

Query: 181 LPDSVSGGTPAANERVKKVLELERKRLQVRGG 213
           LP+SVSGGTPAANERVKKVLELERKRLQVRGG
Sbjct: 181 LPESVSGGTPAANERVKKVLELERKRLQVRGG 178

[Close]

BLAST of IVF0020037 vs. NCBI nr
Match: XP_008447009.1 (PREDICTED: protein LSM12 homolog A [Cucumis melo])

HSP 1 Score: 338 bits (866), Expect = 1.12e-115
Identity = 180/213 (84.51%), Postives = 185/213 (86.85%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFF 60
           MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL   +   F          
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILTT-LGDEF---------- 60

Query: 61  LNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLN 120
                ++F       ++QEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLN
Sbjct: 61  -QGQVITFDRPSNILVLQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLN 120

Query: 121 TLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPY 180
           TLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPY
Sbjct: 121 TLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPY 180

Query: 181 LPDSVSGGTPAANERVKKVLELERKRLQVRGGQ 213
           LPDSVSGGTPAANERVKKVLELERKRLQVRGGQ
Sbjct: 181 LPDSVSGGTPAANERVKKVLELERKRLQVRGGQ 201

[Close]

BLAST of IVF0020037 vs. NCBI nr
Match: KAA0034336.1 (protein LSM12-like protein A [Cucumis melo var. makuwa])

HSP 1 Score: 333 bits (855), Expect = 2.28e-114
Identity = 177/213 (83.10%), Postives = 177/213 (83.10%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFF 60
           MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL                  
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL------------------ 60

Query: 61  LNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLN 120
                             EGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLN
Sbjct: 61  ------------------EGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLN 120

Query: 121 TLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPY 180
           TLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPY
Sbjct: 121 TLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPY 177

Query: 181 LPDSVSGGTPAANERVKKVLELERKRLQVRGGQ 213
           LPDSVSGGTPAANERVKKVLELERKRLQVRGGQ
Sbjct: 181 LPDSVSGGTPAANERVKKVLELERKRLQVRGGQ 177

[Close]

BLAST of IVF0020037 vs. NCBI nr
Match: XP_038892233.1 (protein LSM12 homolog A-like [Benincasa hispida])

HSP 1 Score: 332 bits (852), Expect = 7.53e-114
Identity = 176/211 (83.41%), Postives = 178/211 (84.36%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFF 60
           MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVL                
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVL---------------- 60

Query: 61  LNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLN 120
                            QEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLN
Sbjct: 61  -----------------QEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLN 120

Query: 121 TLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPY 180
           TLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV+SPY
Sbjct: 121 TLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPY 178

Query: 181 LPDSVSGGTPAANERVKKVLELERKRLQVRG 211
           LP+SVSGGTPAANERVKKVLELERKRLQVRG
Sbjct: 181 LPESVSGGTPAANERVKKVLELERKRLQVRG 178

[Close]

BLAST of IVF0020037 vs. NCBI nr
Match: XP_004135229.1 (protein LSM12 homolog A [Cucumis sativus])

HSP 1 Score: 332 bits (852), Expect = 7.53e-114
Identity = 176/212 (83.02%), Postives = 178/212 (83.96%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFF 60
           MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVL                
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVL---------------- 60

Query: 61  LNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLN 120
                            QEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLN
Sbjct: 61  -----------------QEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLN 120

Query: 121 TLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPY 180
           TLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV+SPY
Sbjct: 121 TLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPY 179

Query: 181 LPDSVSGGTPAANERVKKVLELERKRLQVRGG 212
           LP+SVSGGTPAANERVKKVLE ERKRLQVRGG
Sbjct: 181 LPESVSGGTPAANERVKKVLEWERKRLQVRGG 179

[Close]

BLAST of IVF0020037 vs. NCBI nr
Match: TYK15583.1 (protein LSM12-like protein A [Cucumis melo var. makuwa])

HSP 1 Score: 330 bits (845), Expect = 1.08e-112
Identity = 175/211 (82.94%), Postives = 175/211 (82.94%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFF 60
           MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL                  
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL------------------ 60

Query: 61  LNSLTVSFFCCYFCDLIQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLN 120
                             EGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLN
Sbjct: 61  ------------------EGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLN 120

Query: 121 TLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPY 180
           TLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPY
Sbjct: 121 TLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPY 175

Query: 181 LPDSVSGGTPAANERVKKVLELERKRLQVRG 211
           LPDSVSGGTPAANERVKKVLELERKRLQVRG
Sbjct: 181 LPDSVSGGTPAANERVKKVLELERKRLQVRG 175

[Close]

BLAST of IVF0020037 vs. TAIR 10
Match: AT1G24050.1 (RNA-processing, Lsm domain )

HSP 1 Score: 189.5 bits (480), Expect = 2.8e-48
Identity = 108/207 (52.17%), Postives = 136/207 (65.70%), Query Frame = 0


Query: 7   GNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSPFLIFLFVFLFFLNSLTV 66
           G G+ F+VG+ +S+K   GDEF+G V+ +D   N                F+FF      
Sbjct: 14  GEGEKFAVGNIYSVKVITGDEFRGIVMAYDPIPN----------------FVFF------ 73

Query: 67  SFFCCYFCDLIQEGSKPGP--RRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLNTLRA 126
                      +EG+KP P   +N R++ A++I   S+LG  EDPLD  N  +DLN LRA
Sbjct: 74  -----------EEGTKPRPGHLKNTRMVNASFITGLSYLGKTEDPLDSDNFSVDLNGLRA 133

Query: 127 REELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVNSPYLPDS 186
           +E LAIRQAEA+AER+GVGVT+EAQSIFDALSKTLPV+W+ + I+VM EVRV SPYL D 
Sbjct: 134 KEALAIRQAEADAERMGVGVTAEAQSIFDALSKTLPVQWENSDILVMKEVRVRSPYLSDC 187

Query: 187 VSGGTPAANERVKKVLELERKRLQVRG 212
           V GGT AAN RVKKVLELER+RLQ+ G
Sbjct: 194 VFGGTDAANNRVKKVLELERRRLQLFG 187

[Close]

BLAST of IVF0020037 vs. TAIR 10
Match: AT1G70220.1 (RNA-processing, Lsm domain )

HSP 1 Score: 131.0 bits (328), Expect = 1.2e-30
Identity = 88/218 (40.37%), Postives = 125/218 (57.34%), Query Frame = 0


Query: 3   LDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHIL-----SPFL-IFLFV 62
           +D  G  + F VG  +++K T GD+F G V+ +D   N  V  IL     S  +  +L  
Sbjct: 11  VDSGGEDEKFEVGKVYAVKLTTGDQFNGIVLAYDSEPNFAVFDILFRNRYSQLVDSYLCY 70

Query: 63  FLFFLNSLTVSFFCCYFCD---LIQEGSKPGP--RRNIRLLKANYIKEFSFLGHGEDPLD 122
           F F ++S  V F    F D   ++QEG+KP P   +++R++  NYI E   LG  ++ L 
Sbjct: 71  FAFLISSSCVCF--RVFLDGLVILQEGTKPKPLDSKSLRMVNVNYITEMKNLGRVKERL- 130

Query: 123 LKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVM 182
            KN  ++L+ L  +E  AI    +  E+IG GVT+E Q IFDA+SKTLP+RW    ++VM
Sbjct: 131 AKNTLVNLDGLIEKENHAI----SNVEKIGFGVTAEGQMIFDAISKTLPIRWVNKEMLVM 190

Query: 183 NEVRVNSPYLPDSVSGGTPAANERVKKVLELERKRLQV 210
            +V + SPY  D V GG    NERVK VL  ERK+LQ+
Sbjct: 191 GDVFIRSPYHSDCVYGGPRMVNERVKHVLGQERKKLQL 221

The following BLAST results are available for this feature:

BLAST of IVF0020037 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6PBA2	7.7e-11	27.41	Protein LSM12 homolog A OS=Danio rerio OX=7955 GN=lsm12a PE=2 SV=1	[more]
Q6NSN1	1.3e-10	27.41	Protein LSM12 homolog B OS=Danio rerio OX=7955 GN=lsm12b PE=2 SV=1	[more]
Q0VCF9	7.2e-09	27.18	Protein LSM12 homolog OS=Bos taurus OX=9913 GN=LSM12 PE=2 SV=2	[more]
Q5ZML5	7.2e-09	26.67	Protein LSM12 homolog OS=Gallus gallus OX=9031 GN=LSM12 PE=2 SV=1	[more]
Q3MHD2	7.2e-09	27.18	Protein LSM12 homolog OS=Homo sapiens OX=9606 GN=LSM12 PE=1 SV=2	[more]

BLAST of IVF0020037 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SWT7	6.2e-88	83.10	Protein LSM12-like protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A1S3BGE7	8.1e-88	85.45	protein LSM12 homolog A OS=Cucumis melo OX=3656 GN=LOC103489557 PE=3 SV=1	[more]
A0A0A0KQA9	1.8e-87	83.02	AD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G603270 PE=3 SV=...	[more]
A0A5D3CUL6	8.9e-87	82.94	Protein LSM12-like protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A6J1GZX6	6.4e-85	82.08	protein LSM12 homolog A OS=Cucurbita moschata OX=3662 GN=LOC111458358 PE=3 SV=1	[more]

BLAST of IVF0020037 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447009.1	1.12e-115	84.51	PREDICTED: protein LSM12 homolog A [Cucumis melo]	[more]
KAA0034336.1	2.28e-114	83.10	protein LSM12-like protein A [Cucumis melo var. makuwa]	[more]
XP_038892233.1	7.53e-114	83.41	protein LSM12 homolog A-like [Benincasa hispida]	[more]
XP_004135229.1	7.53e-114	83.02	protein LSM12 homolog A [Cucumis sativus]	[more]
TYK15583.1	1.08e-112	82.94	protein LSM12-like protein A [Cucumis melo var. makuwa]	[more]

BLAST of IVF0020037 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G24050.1	2.8e-48	52.17	RNA-processing, Lsm domain	[more]
AT1G70220.1	1.2e-30	40.37	RNA-processing, Lsm domain	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019181	Anticodon-binding domain	SMART	SM00995	AD_2	coord: 113..199 e-value: 3.3E-32 score: 123.0
IPR019181	Anticodon-binding domain	PFAM	PF09793	AD	coord: 117..199 e-value: 2.2E-23 score: 82.1
IPR039683	Protein Lsm12-like	PANTHER	PTHR13542	LSM12 HOMOLOG	coord: 7..210

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0020037.2	IVF0020037.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030574	collagen catabolic process
biological_process	GO:0030198	extracellular matrix organization
biological_process	GO:0006508	proteolysis
cellular_component	GO:0031012	extracellular matrix
molecular_function	GO:0004222	metalloendopeptidase activity
molecular_function	GO:0008270	zinc ion binding