IVF0019666 (gene) Melon (IVF77) v1

Overview


Name	IVF0019666
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag-pol polyprotein
Location	chr08: 18340108 .. 18340503 (+)
RNA-Seq Expression	IVF0019666
Synteny	IVF0019666

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATAATCAGAGAAGGACCATCTGCATCACGTCTTCCTGTCCTTGATGGTAAAAACTACTCATATTGGAAACCTCAGATGATCTTCTTCATTAAGACGTTAGATGGAAAAGCTTGGAGAGCTCTTGTGGCAGGCTATGATCCTCCTATGATTACCGTGAATGGTGTTTCGGTTCCAAAGCCTGAAGTTGATTGGACCGATGCTGAAGAGCAAGCATCCGTTGGGAATGCCAGAGCACTTAACACAATATTCAATGGTGTTGACCTGAACGTTTTCAAGTTAATAAATTCGTGCAGTACAGCTAAAGAAGCTTGGAAAACCTTGGAGGTAGCGTGTGAAGGTACTTCCAAAGTAAAAATTTCTAGATTACAGTTGATAACATATAAGTTTTAG

mRNA sequence

ATGGAGATAATCAGAGAAGGACCATCTGCATCACGTCTTCCTGTCCTTGATGGTAAAAACTACTCATATTGGAAACCTCAGATGATCTTCTTCATTAAGACGTTAGATGGAAAAGCTTGGAGAGCTCTTGTGGCAGGCTATGATCCTCCTATGATTACCGTGAATGGTGTTTCGGTTCCAAAGCCTGAAGTTGATTGGACCGATGCTGAAGAGCAAGCATCCGTTGGGAATGCCAGAGCACTTAACACAATATTCAATGGTGTTGACCTGAACGTTTTCAAGTTAATAAATTCGTGCAGTACAGCTAAAGAAGCTTGGAAAACCTTGGAGGTAGCGTGTGAAGGTACTTCCAAAGTAAAAATTTCTAGATTACAGTTGATAACATATAAGTTTTAG

Coding sequence (CDS)

ATGGAGATAATCAGAGAAGGACCATCTGCATCACGTCTTCCTGTCCTTGATGGTAAAAACTACTCATATTGGAAACCTCAGATGATCTTCTTCATTAAGACGTTAGATGGAAAAGCTTGGAGAGCTCTTGTGGCAGGCTATGATCCTCCTATGATTACCGTGAATGGTGTTTCGGTTCCAAAGCCTGAAGTTGATTGGACCGATGCTGAAGAGCAAGCATCCGTTGGGAATGCCAGAGCACTTAACACAATATTCAATGGTGTTGACCTGAACGTTTTCAAGTTAATAAATTCGTGCAGTACAGCTAAAGAAGCTTGGAAAACCTTGGAGGTAGCGTGTGAAGGTACTTCCAAAGTAAAAATTTCTAGATTACAGTTGATAACATATAAGTTTTAG

Protein sequence

MEIIREGPSASRLPVLDGKNYSYWKPQMIFFIKTLDGKAWRALVAGYDPPMITVNGVSVPKPEVDWTDAEEQASVGNARALNTIFNGVDLNVFKLINSCSTAKEAWKTLEVACEGTSKVKISRLQLITYKF

Homology

[Close]

BLAST of IVF0019666 vs. ExPASy TrEMBL
Match: A0A5D3BSP9 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00770 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 2.3e-69
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MEIIREGPSASRLPVLDGKNYSYWKPQMIFFIKTLDGKAWRALVAGYDPPMITVNGVSVP 60
           MEIIREGPSASRLPVLDGKNYSYWKPQMIFFIKTLDGKAWRALVAGYDPPMITVNGVSVP
Sbjct: 1   MEIIREGPSASRLPVLDGKNYSYWKPQMIFFIKTLDGKAWRALVAGYDPPMITVNGVSVP 60

Query: 61  KPEVDWTDAEEQASVGNARALNTIFNGVDLNVFKLINSCSTAKEAWKTLEVACEGTSKVK 120
           KPEVDWTDAEEQASVGNARALNTIFNGVDLNVFKLINSCSTAKEAWKTLEVACEGTSKVK
Sbjct: 61  KPEVDWTDAEEQASVGNARALNTIFNGVDLNVFKLINSCSTAKEAWKTLEVACEGTSKVK 120

Query: 121 ISRLQLITYKF 132
           ISRLQLITYKF
Sbjct: 121 ISRLQLITYKF 131

[Close]

BLAST of IVF0019666 vs. ExPASy TrEMBL
Match: A0A5A7UJR8 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold85G00050 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 3.2e-63
Identity = 123/131 (93.89%), Postives = 124/131 (94.66%), Query Frame = 0


Query: 1   MEIIREGPSASRLPVLDGKNYSYWKPQMIFFIKTLDGKAWRALVAGYDPPMITVNGVSVP 60
           MEIIREGPSASR PVLDGKNYSYWKPQMIFFIKTLDGKAWRALVAGYDPPMIT NGVSVP
Sbjct: 1   MEIIREGPSASRPPVLDGKNYSYWKPQMIFFIKTLDGKAWRALVAGYDPPMITANGVSVP 60

Query: 61  KPEVDWTDAEEQASVGNARALNTIFNGVDLNVFKLINSCSTAKEAWKTLEVACEGTSKVK 120
           K EVDWTDAEEQASVGNARA N IFNGVDLN+FKLINSCSTAKEAWKTLEVA EGTSKVK
Sbjct: 61  KLEVDWTDAEEQASVGNARARNAIFNGVDLNIFKLINSCSTAKEAWKTLEVAYEGTSKVK 120

Query: 121 ISRLQLITYKF 132
           ISRLQLIT KF
Sbjct: 121 ISRLQLITSKF 131

[Close]

BLAST of IVF0019666 vs. ExPASy TrEMBL
Match: A0A5D3D6K4 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold522G001280 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 3.2e-63
Identity = 121/131 (92.37%), Postives = 126/131 (96.18%), Query Frame = 0


Query: 1   MEIIREGPSASRLPVLDGKNYSYWKPQMIFFIKTLDGKAWRALVAGYDPPMITVNGVSVP 60
           MEII+EGPSASR P+LDGKNYSYWKPQMIFFIKTLDGKAWRALVAGY+PPMITVNGVSVP
Sbjct: 1   MEIIKEGPSASRPPILDGKNYSYWKPQMIFFIKTLDGKAWRALVAGYNPPMITVNGVSVP 60

Query: 61  KPEVDWTDAEEQASVGNARALNTIFNGVDLNVFKLINSCSTAKEAWKTLEVACEGTSKVK 120
           KPEVDWT+AEEQASVGNARALN IFNGVDLNVFKLIN C TAKEAWKTLEVA EGTSKVK
Sbjct: 61  KPEVDWTNAEEQASVGNARALNAIFNGVDLNVFKLINFCITAKEAWKTLEVAYEGTSKVK 120

Query: 121 ISRLQLITYKF 132
           ISRLQLIT+KF
Sbjct: 121 ISRLQLITFKF 131

[Close]

BLAST of IVF0019666 vs. ExPASy TrEMBL
Match: A0A5D3B9V9 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00980 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.6e-62
Identity = 120/131 (91.60%), Postives = 125/131 (95.42%), Query Frame = 0


Query: 1   MEIIREGPSASRLPVLDGKNYSYWKPQMIFFIKTLDGKAWRALVAGYDPPMITVNGVSVP 60
           MEIIREGPS SR PVLDGKNYSYWKP+MIFFI+TLDG+AWRALVAGYDPPMIT+NGVSVP
Sbjct: 1   MEIIREGPSTSRPPVLDGKNYSYWKPRMIFFIETLDGRAWRALVAGYDPPMITMNGVSVP 60

Query: 61  KPEVDWTDAEEQASVGNARALNTIFNGVDLNVFKLINSCSTAKEAWKTLEVACEGTSKVK 120
           KPEVDWTDAEEQ+ VGNARALN IFNGVDLNVFKLINSCSTAKEAWKTLEVA EGTSKVK
Sbjct: 61  KPEVDWTDAEEQSFVGNARALNAIFNGVDLNVFKLINSCSTAKEAWKTLEVAYEGTSKVK 120

Query: 121 ISRLQLITYKF 132
           ISRLQLIT KF
Sbjct: 121 ISRLQLITSKF 131

[Close]

BLAST of IVF0019666 vs. ExPASy TrEMBL
Match: A0A5A7TCV9 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold708G00210 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.1e-62
Identity = 121/131 (92.37%), Postives = 124/131 (94.66%), Query Frame = 0


Query: 1   MEIIREGPSASRLPVLDGKNYSYWKPQMIFFIKTLDGKAWRALVAGYDPPMITVNGVSVP 60
           MEIIREGPSASR P+LDGKNYSYWKP+MIFFIK LDGKAWRALVAGYDPPMITVNGV VP
Sbjct: 1   MEIIREGPSASRSPILDGKNYSYWKPRMIFFIKMLDGKAWRALVAGYDPPMITVNGVLVP 60

Query: 61  KPEVDWTDAEEQASVGNARALNTIFNGVDLNVFKLINSCSTAKEAWKTLEVACEGTSKVK 120
           KPEVDWTDAEEQASVGNARALN IFN VDLNVFKLINSCST+KEAWKTLEVA EGTSKVK
Sbjct: 61  KPEVDWTDAEEQASVGNARALNAIFNVVDLNVFKLINSCSTSKEAWKTLEVAYEGTSKVK 120

Query: 121 ISRLQLITYKF 132
           ISRLQLIT KF
Sbjct: 121 ISRLQLITSKF 131

[Close]

BLAST of IVF0019666 vs. NCBI nr
Match: TYK02457.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 269 bits (687), Expect = 2.00e-84
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MEIIREGPSASRLPVLDGKNYSYWKPQMIFFIKTLDGKAWRALVAGYDPPMITVNGVSVP 60
           MEIIREGPSASRLPVLDGKNYSYWKPQMIFFIKTLDGKAWRALVAGYDPPMITVNGVSVP
Sbjct: 1   MEIIREGPSASRLPVLDGKNYSYWKPQMIFFIKTLDGKAWRALVAGYDPPMITVNGVSVP 60

Query: 61  KPEVDWTDAEEQASVGNARALNTIFNGVDLNVFKLINSCSTAKEAWKTLEVACEGTSKVK 120
           KPEVDWTDAEEQASVGNARALNTIFNGVDLNVFKLINSCSTAKEAWKTLEVACEGTSKVK
Sbjct: 61  KPEVDWTDAEEQASVGNARALNTIFNGVDLNVFKLINSCSTAKEAWKTLEVACEGTSKVK 120

Query: 121 ISRLQLITYKF 131
           ISRLQLITYKF
Sbjct: 121 ISRLQLITYKF 131

[Close]

BLAST of IVF0019666 vs. NCBI nr
Match: TYK19191.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 248 bits (634), Expect = 1.09e-81
Identity = 121/131 (92.37%), Postives = 126/131 (96.18%), Query Frame = 0


Query: 1   MEIIREGPSASRLPVLDGKNYSYWKPQMIFFIKTLDGKAWRALVAGYDPPMITVNGVSVP 60
           MEII+EGPSASR P+LDGKNYSYWKPQMIFFIKTLDGKAWRALVAGY+PPMITVNGVSVP
Sbjct: 1   MEIIKEGPSASRPPILDGKNYSYWKPQMIFFIKTLDGKAWRALVAGYNPPMITVNGVSVP 60

Query: 61  KPEVDWTDAEEQASVGNARALNTIFNGVDLNVFKLINSCSTAKEAWKTLEVACEGTSKVK 120
           KPEVDWT+AEEQASVGNARALN IFNGVDLNVFKLIN C TAKEAWKTLEVA EGTSKVK
Sbjct: 61  KPEVDWTNAEEQASVGNARALNAIFNGVDLNVFKLINFCITAKEAWKTLEVAYEGTSKVK 120

Query: 121 ISRLQLITYKF 131
           ISRLQLIT+KF
Sbjct: 121 ISRLQLITFKF 131

[Close]

BLAST of IVF0019666 vs. NCBI nr
Match: KAA0053604.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 246 bits (627), Expect = 1.27e-80
Identity = 119/131 (90.84%), Postives = 126/131 (96.18%), Query Frame = 0


Query: 1   MEIIREGPSASRLPVLDGKNYSYWKPQMIFFIKTLDGKAWRALVAGYDPPMITVNGVSVP 60
           MEII+EGPSASR P+LDGKNYSYWKP+MIFFIKTLDGKAWRAL+AGY+PPMITVNGVSVP
Sbjct: 1   MEIIKEGPSASRPPILDGKNYSYWKPRMIFFIKTLDGKAWRALMAGYNPPMITVNGVSVP 60

Query: 61  KPEVDWTDAEEQASVGNARALNTIFNGVDLNVFKLINSCSTAKEAWKTLEVACEGTSKVK 120
           KPEVDWT+AEEQASVGNARALN IFNGVDLNVFKLIN C TAKEAWKTLEVA EGTSKVK
Sbjct: 61  KPEVDWTNAEEQASVGNARALNAIFNGVDLNVFKLINFCITAKEAWKTLEVAYEGTSKVK 120

Query: 121 ISRLQLITYKF 131
           ISRLQLIT+KF
Sbjct: 121 ISRLQLITFKF 131

[Close]

BLAST of IVF0019666 vs. NCBI nr
Match: KAA0040963.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK20294.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 246 bits (627), Expect = 1.03e-78
Identity = 121/131 (92.37%), Postives = 124/131 (94.66%), Query Frame = 0


Query: 1   MEIIREGPSASRLPVLDGKNYSYWKPQMIFFIKTLDGKAWRALVAGYDPPMITVNGVSVP 60
           MEIIREGPSASR P+LDGKNYSYWKP+MIFFIK LDGKAWRALVAGYDPPMITVNGV VP
Sbjct: 1   MEIIREGPSASRSPILDGKNYSYWKPRMIFFIKMLDGKAWRALVAGYDPPMITVNGVLVP 60

Query: 61  KPEVDWTDAEEQASVGNARALNTIFNGVDLNVFKLINSCSTAKEAWKTLEVACEGTSKVK 120
           KPEVDWTDAEEQASVGNARALN IFN VDLNVFKLINSCST+KEAWKTLEVA EGTSKVK
Sbjct: 61  KPEVDWTDAEEQASVGNARALNAIFNVVDLNVFKLINSCSTSKEAWKTLEVAYEGTSKVK 120

Query: 121 ISRLQLITYKF 131
           ISRLQLIT KF
Sbjct: 121 ISRLQLITSKF 131

[Close]

BLAST of IVF0019666 vs. NCBI nr
Match: TYJ97129.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 239 bits (609), Expect = 1.41e-78
Identity = 118/131 (90.08%), Postives = 123/131 (93.89%), Query Frame = 0


Query: 1   MEIIREGPSASRLPVLDGKNYSYWKPQMIFFIKTLDGKAWRALVAGYDPPMITVNGVSVP 60
           MEIIREG SASR P+LD KNYS WKP+MIFFIKTLDGKAWRAL+AGYDPPMITVNGVSVP
Sbjct: 1   MEIIREGLSASRPPILDDKNYSSWKPRMIFFIKTLDGKAWRALMAGYDPPMITVNGVSVP 60

Query: 61  KPEVDWTDAEEQASVGNARALNTIFNGVDLNVFKLINSCSTAKEAWKTLEVACEGTSKVK 120
           KPEVDW DAE+QASVGNARALN IFNG+DLNVFKLINSCSTAKEAWKTLEVA EGTSKVK
Sbjct: 61  KPEVDWADAEKQASVGNARALNAIFNGLDLNVFKLINSCSTAKEAWKTLEVAYEGTSKVK 120

Query: 121 ISRLQLITYKF 131
           ISRLQLIT KF
Sbjct: 121 ISRLQLITSKF 131

The following BLAST results are available for this feature:

BLAST of IVF0019666 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0019666 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BSP9	2.3e-69	100.00	Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5A7UJR8	3.2e-63	93.89	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3D6K4	3.2e-63	92.37	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold522G...	[more]
A0A5D3B9V9	1.6e-62	91.60	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G...	[more]
A0A5A7TCV9	2.1e-62	92.37	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold708G...	[more]

BLAST of IVF0019666 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK02457.1	2.00e-84	100.00	gag-proteinase polyprotein [Cucumis melo var. makuwa]	[more]
TYK19191.1	1.09e-81	92.37	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0053604.1	1.27e-80	90.84	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0040963.1	1.03e-78	92.37	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK20294.1 gag-pol polyprotein [...	[more]
TYJ97129.1	1.41e-78	90.08	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0019666 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 77..124 e-value: 1.1E-6 score: 28.4
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 5..130
None	No IPR available	PANTHER	PTHR34676:SF8	MYOSIN-11-LIKE	coord: 5..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0019666.1	IVF0019666.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding