Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGAAGATAATCAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAG
mRNA sequence
ATGCATGAAGATAATCAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAG
Coding sequence (CDS)
ATGCATGAAGATAATCAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAG
Protein sequence
MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNREESISNNRFYYGTAHDVHIDLLCASASSIG
Homology
BLAST of IVF0018845 vs. ExPASy TrEMBL
Match:
A0A2Z7CD92 (Membrane protein ycf1 OS=Dorcoceras hygrometricum OX=472368 GN=F511_24658 PE=4 SV=1)
HSP 1 Score: 147.1 bits (370), Expect = 2.7e-32
Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = 0
Query: 1 MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNREESISNNRFYYGTAHDVHI 60
MHEDNQFGRCGRTLLWIS+HILHRALLSLPSPSSGYGRRNREE ISNN FYYGTAHDVHI
Sbjct: 1 MHEDNQFGRCGRTLLWISEHILHRALLSLPSPSSGYGRRNREEGISNNWFYYGTAHDVHI 60
Query: 61 DLLCASASSIG 72
DLLCASASSIG
Sbjct: 61 DLLCASASSIG 71
BLAST of IVF0018845 vs. ExPASy TrEMBL
Match:
A0A650F2E1 (Hypothetical chloroplast RF19 OS=Senegalia senegal OX=138043 GN=ycf1 PE=4 SV=1)
HSP 1 Score: 145.6 bits (366), Expect = 8.0e-32
Identity = 68/71 (95.77%), Postives = 68/71 (95.77%), Query Frame = 0
Query: 1 MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNREESISNNRFYYGTAHDVHI 60
MHEDN FGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNREESISNN FYYGTAHDVHI
Sbjct: 14 MHEDNYFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNREESISNNWFYYGTAHDVHI 73
Query: 61 DLLCASASSIG 72
DLLCA ASSIG
Sbjct: 74 DLLCAFASSIG 84
BLAST of IVF0018845 vs. ExPASy TrEMBL
Match:
A0A200QRC7 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_8945g12 PE=4 SV=1)
HSP 1 Score: 144.1 bits (362), Expect = 2.3e-31
Identity = 67/71 (94.37%), Postives = 67/71 (94.37%), Query Frame = 0
Query: 1 MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNREESISNNRFYYGTAHDVHI 60
MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNRE ISNN FYYGTAHDVHI
Sbjct: 1 MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNREGGISNNWFYYGTAHDVHI 60
Query: 61 DLLCASASSIG 72
DLLCAS SSIG
Sbjct: 61 DLLCASPSSIG 71
BLAST of IVF0018845 vs. ExPASy TrEMBL
Match:
A0A410PAD6 (Protein TIC 214 OS=Commiphora gileadensis OX=1700993 GN=ycf1 PE=3 SV=1)
HSP 1 Score: 139.8 bits (351), Expect = 4.4e-30
Identity = 68/74 (91.89%), Postives = 68/74 (91.89%), Query Frame = 0
Query: 1 MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYG---RRNREESISNNRFYYGTAHD 60
MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYG RRNREE ISNN FY GTAHD
Sbjct: 8 MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRRRRNREEGISNNWFYCGTAHD 67
Query: 61 VHIDLLCASASSIG 72
VHIDLLCASASSIG
Sbjct: 68 VHIDLLCASASSIG 81
BLAST of IVF0018845 vs. ExPASy TrEMBL
Match:
A0A650GBS0 (Uncharacterized protein OS=Raphanus sativus OX=3726 GN=orf74e PE=4 SV=1)
HSP 1 Score: 139.0 bits (349), Expect = 7.4e-30
Identity = 68/74 (91.89%), Postives = 68/74 (91.89%), Query Frame = 0
Query: 1 MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYG---RRNREESISNNRFYYGTAHD 60
MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYG RRNREESISNN FY GTAHD
Sbjct: 1 MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRRRRNREESISNNWFYCGTAHD 60
Query: 61 VHIDLLCASASSIG 72
VHIDLLCASA SIG
Sbjct: 61 VHIDLLCASAFSIG 74
BLAST of IVF0018845 vs. NCBI nr
Match:
KZV45020.1 (membrane protein ycf1 [Dorcoceras hygrometricum])
HSP 1 Score: 146 bits (369), Expect = 2.92e-44
Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = 0
Query: 1 MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNREESISNNRFYYGTAHDVHI 60
MHEDNQFGRCGRTLLWIS+HILHRALLSLPSPSSGYGRRNREE ISNN FYYGTAHDVHI
Sbjct: 1 MHEDNQFGRCGRTLLWISEHILHRALLSLPSPSSGYGRRNREEGISNNWFYYGTAHDVHI 60
Query: 61 DLLCASASSIG 71
DLLCASASSIG
Sbjct: 61 DLLCASASSIG 71
BLAST of IVF0018845 vs. NCBI nr
Match:
OVA13011.1 (hypothetical protein BVC80_8945g12 [Macleaya cordata])
HSP 1 Score: 143 bits (361), Expect = 4.85e-43
Identity = 67/71 (94.37%), Postives = 67/71 (94.37%), Query Frame = 0
Query: 1 MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNREESISNNRFYYGTAHDVHI 60
MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNRE ISNN FYYGTAHDVHI
Sbjct: 1 MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNREGGISNNWFYYGTAHDVHI 60
Query: 61 DLLCASASSIG 71
DLLCAS SSIG
Sbjct: 61 DLLCASPSSIG 71
BLAST of IVF0018845 vs. NCBI nr
Match:
QGW48450.1 (hypothetical protein [Raphanus sativus] >QGW48605.1 hypothetical protein [Raphanus sativus])
HSP 1 Score: 138 bits (348), Expect = 5.10e-41
Identity = 68/74 (91.89%), Postives = 68/74 (91.89%), Query Frame = 0
Query: 1 MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRR---NREESISNNRFYYGTAHD 60
MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRR NREESISNN FY GTAHD
Sbjct: 1 MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRRRRNREESISNNWFYCGTAHD 60
Query: 61 VHIDLLCASASSIG 71
VHIDLLCASA SIG
Sbjct: 61 VHIDLLCASAFSIG 74
BLAST of IVF0018845 vs. NCBI nr
Match:
PLY71591.1 (hypothetical protein LSAT_1X88141 [Lactuca sativa] >PLY71825.1 hypothetical protein LSAT_3X45940 [Lactuca sativa] >PLY92833.1 hypothetical protein LSAT_5X181940 [Lactuca sativa] >PLY94842.1 hypothetical protein LSAT_2X97160 [Lactuca sativa] >PLY96461.1 hypothetical protein LSAT_5X47101 [Lactuca sativa])
HSP 1 Score: 135 bits (341), Expect = 5.97e-40
Identity = 66/74 (89.19%), Postives = 67/74 (90.54%), Query Frame = 0
Query: 1 MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRR---NREESISNNRFYYGTAHD 60
MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSS YGRR NREE ISNN FYYGTAH+
Sbjct: 1 MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSHYGRRRRRNREEGISNNWFYYGTAHN 60
Query: 61 VHIDLLCASASSIG 71
VHIDLLCASASS G
Sbjct: 61 VHIDLLCASASSTG 74
BLAST of IVF0018845 vs. NCBI nr
Match:
PKU73252.1 (hypothetical protein MA16_Dca017358 [Dendrobium catenatum])
HSP 1 Score: 135 bits (340), Expect = 7.79e-40
Identity = 63/71 (88.73%), Postives = 66/71 (92.96%), Query Frame = 0
Query: 1 MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNREESISNNRFYYGTAHDVHI 60
MHEDN+FGRCGR LLWISDHILHRALLSLPSPSSGYGRRNRE ISNN FY GTAHDVHI
Sbjct: 1 MHEDNKFGRCGRALLWISDHILHRALLSLPSPSSGYGRRNREGGISNNWFYCGTAHDVHI 60
Query: 61 DLLCASASSIG 71
+LLCASAS+IG
Sbjct: 61 NLLCASASNIG 71
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A2Z7CD92 | 2.7e-32 | 95.77 | Membrane protein ycf1 OS=Dorcoceras hygrometricum OX=472368 GN=F511_24658 PE=4 S... | [more] |
A0A650F2E1 | 8.0e-32 | 95.77 | Hypothetical chloroplast RF19 OS=Senegalia senegal OX=138043 GN=ycf1 PE=4 SV=1 | [more] |
A0A200QRC7 | 2.3e-31 | 94.37 | Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_8945g12 PE=4 SV=1 | [more] |
A0A410PAD6 | 4.4e-30 | 91.89 | Protein TIC 214 OS=Commiphora gileadensis OX=1700993 GN=ycf1 PE=3 SV=1 | [more] |
A0A650GBS0 | 7.4e-30 | 91.89 | Uncharacterized protein OS=Raphanus sativus OX=3726 GN=orf74e PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KZV45020.1 | 2.92e-44 | 95.77 | membrane protein ycf1 [Dorcoceras hygrometricum] | [more] |
OVA13011.1 | 4.85e-43 | 94.37 | hypothetical protein BVC80_8945g12 [Macleaya cordata] | [more] |
QGW48450.1 | 5.10e-41 | 91.89 | hypothetical protein [Raphanus sativus] >QGW48605.1 hypothetical protein [Raphan... | [more] |
PLY71591.1 | 5.97e-40 | 89.19 | hypothetical protein LSAT_1X88141 [Lactuca sativa] >PLY71825.1 hypothetical prot... | [more] |
PKU73252.1 | 7.79e-40 | 88.73 | hypothetical protein MA16_Dca017358 [Dendrobium catenatum] | [more] |
Match Name | E-value | Identity | Description | |