IVF0018685 (gene) Melon (IVF77) v1

Overview
NameIVF0018685
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRibonuclease H
Locationchr01: 7314273 .. 7314950 (+)
RNA-Seq ExpressionIVF0018685
SyntenyIVF0018685
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCCTATAAAATACATTTTTGAAAAGCCATCCTTATCAGGAAGGATAGCTAAGTGGCAAGTGTTGTTATCAGAGTTTGATATCGTTTACATTACTAGAAAGGCCATAAAGGGTAGTGTGATTGCTGATTGCTTAGCGGAGTTACCAATTGAGGACTATGAGCCCATGAAGTTCGATTTTCCAGATGAAGATATCATGGCATTAGTAAATACATCATCGAATACATGGACAATGATGTTTGATGGAGCCACGAACGAAATAGGGCACGGTGTGGGAGCAATTTTGATGTCCCCCGATGGGAAGTGGTACCCTTTAACTGCTAAGTTATATTTCGATTGCACCAATAACATGGCTGAGTATGAGGCATGTAGTATGGGAGTGCGAATGGCATACGAGATGAAAATAAAAAAATTACGAGTCCTTGGGGACTCCCTGTTGGTTGTACATCAGCTGAATGGGGAATGGGAGACAAGGGATGCTAAATTGATCCCTTATAACGATTATATTCGCACAATAGCGCAAACTTTTGATTCAATAACTTTTGAACACGTCCCACGCGAAAGCAATCAGGTTGCAGATGCATTAGCCACTCTTTCTGCCATGTTTAATGTAGCTTACAGTGAAGAAGTTCAACCCATAAGGATGGAGAAGTATAGACACCATCCTATTGTATGA

mRNA sequence

ATGGATCCTATAAAATACATTTTTGAAAAGCCATCCTTATCAGGAAGGATAGCTAAGTGGCAAGTGTTGTTATCAGAGTTTGATATCGTTTACATTACTAGAAAGGCCATAAAGGGTAGTGTGATTGCTGATTGCTTAGCGGAGTTACCAATTGAGGACTATGAGCCCATGAAGTTCGATTTTCCAGATGAAGATATCATGGCATTAGTAAATACATCATCGAATACATGGACAATGATGTTTGATGGAGCCACGAACGAAATAGGGCACGGTGTGGGAGCAATTTTGATGTCCCCCGATGGGAAGTGGTACCCTTTAACTGCTAAGTTATATTTCGATTGCACCAATAACATGGCTGAGTATGAGGCATGTAGTATGGGAGTGCGAATGGCATACGAGATGAAAATAAAAAAATTACGAGTCCTTGGGGACTCCCTGTTGGTTGTACATCAGCTGAATGGGGAATGGGAGACAAGGGATGCTAAATTGATCCCTTATAACGATTATATTCGCACAATAGCGCAAACTTTTGATTCAATAACTTTTGAACACGTCCCACGCGAAAGCAATCAGGTTGCAGATGCATTAGCCACTCTTTCTGCCATGTTTAATGTAGCTTACAGTGAAGAAGTTCAACCCATAAGGATGGAGAAGTATAGACACCATCCTATTGTATGA

Coding sequence (CDS)

ATGGATCCTATAAAATACATTTTTGAAAAGCCATCCTTATCAGGAAGGATAGCTAAGTGGCAAGTGTTGTTATCAGAGTTTGATATCGTTTACATTACTAGAAAGGCCATAAAGGGTAGTGTGATTGCTGATTGCTTAGCGGAGTTACCAATTGAGGACTATGAGCCCATGAAGTTCGATTTTCCAGATGAAGATATCATGGCATTAGTAAATACATCATCGAATACATGGACAATGATGTTTGATGGAGCCACGAACGAAATAGGGCACGGTGTGGGAGCAATTTTGATGTCCCCCGATGGGAAGTGGTACCCTTTAACTGCTAAGTTATATTTCGATTGCACCAATAACATGGCTGAGTATGAGGCATGTAGTATGGGAGTGCGAATGGCATACGAGATGAAAATAAAAAAATTACGAGTCCTTGGGGACTCCCTGTTGGTTGTACATCAGCTGAATGGGGAATGGGAGACAAGGGATGCTAAATTGATCCCTTATAACGATTATATTCGCACAATAGCGCAAACTTTTGATTCAATAACTTTTGAACACGTCCCACGCGAAAGCAATCAGGTTGCAGATGCATTAGCCACTCTTTCTGCCATGTTTAATGTAGCTTACAGTGAAGAAGTTCAACCCATAAGGATGGAGAAGTATAGACACCATCCTATTGTATGA

Protein sequence

MDPIKYIFEKPSLSGRIAKWQVLLSEFDIVYITRKAIKGSVIADCLAELPIEDYEPMKFDFPDEDIMALVNTSSNTWTMMFDGATNEIGHGVGAILMSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKKLRVLGDSLLVVHQLNGEWETRDAKLIPYNDYIRTIAQTFDSITFEHVPRESNQVADALATLSAMFNVAYSEEVQPIRMEKYRHHPIV
Homology
[Close]
BLAST of IVF0018685 vs. ExPASy Swiss-Prot
Match: Q9HSF6 (Ribonuclease HI OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) OX=64091 GN=rnhA PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.2e-11
Identity = 44/119 (36.97%), Postives = 57/119 (47.90%), Query Frame = 0 

Query: 81  FDGAT--NEIGHGVGAILMSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKK 140
           FDGA+  N     VG +L+S DG             TNN AEY+A    +  A +     
Sbjct: 74  FDGASRGNPGPAAVGWVLVSGDGGIVAEGGDTIGRATNNQAEYDALIAALEAAADFGFDD 133

Query: 141 LRVLGDSLLVVHQLNGEWETRDAKLIPYNDYIRTIAQTFDSITFEHVPRESNQVADALA 198
           + + GDS LV  QL G W+T D  L       R +   FD  +  HVPR +N+ ADALA
Sbjct: 134 IELRGDSQLVEKQLTGAWDTNDPDLRRKRVRARELLTGFDDWSITHVPRATNERADALA 192

[Close]
BLAST of IVF0018685 vs. ExPASy Swiss-Prot
Match: P9WLH5 (Bifunctional protein Rv2228c OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=Rv2228c PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.9e-08
Identity = 36/108 (33.33%), Postives = 53/108 (49.07%), Query Frame = 0 

Query: 91  GVGAILMSPDGKWYPLTAKLYFD-CTNNMAEYEACSMGVRMAYEMKIKKLRVLGDSLLVV 150
           G GA++ + D       +K      TNN+AEY     G+  A ++   +  VL DS LVV
Sbjct: 19  GYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVV 78

Query: 151 HQLNGEWETRDAKLIPYNDYIRTIAQTFDSITFEHVPRESNQVADALA 198
            Q++G W+ +   L+      + +A  F  I +E VPR  N  AD LA
Sbjct: 79  EQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYADRLA 126

[Close]
BLAST of IVF0018685 vs. ExPASy Swiss-Prot
Match: P9WLH4 (Uncharacterized protein MT2287 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=MT2287 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.9e-08
Identity = 36/108 (33.33%), Postives = 53/108 (49.07%), Query Frame = 0 

Query: 91  GVGAILMSPDGKWYPLTAKLYFD-CTNNMAEYEACSMGVRMAYEMKIKKLRVLGDSLLVV 150
           G GA++ + D       +K      TNN+AEY     G+  A ++   +  VL DS LVV
Sbjct: 19  GYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVV 78

Query: 151 HQLNGEWETRDAKLIPYNDYIRTIAQTFDSITFEHVPRESNQVADALA 198
            Q++G W+ +   L+      + +A  F  I +E VPR  N  AD LA
Sbjct: 79  EQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYADRLA 126

[Close]
BLAST of IVF0018685 vs. ExPASy Swiss-Prot
Match: P64956 (Uncharacterized protein Mb2253c OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=BQ2027_MB2253C PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.9e-08
Identity = 36/108 (33.33%), Postives = 53/108 (49.07%), Query Frame = 0 

Query: 91  GVGAILMSPDGKWYPLTAKLYFD-CTNNMAEYEACSMGVRMAYEMKIKKLRVLGDSLLVV 150
           G GA++ + D       +K      TNN+AEY     G+  A ++   +  VL DS LVV
Sbjct: 19  GYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVV 78

Query: 151 HQLNGEWETRDAKLIPYNDYIRTIAQTFDSITFEHVPRESNQVADALA 198
            Q++G W+ +   L+      + +A  F  I +E VPR  N  AD LA
Sbjct: 79  EQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYADRLA 126

[Close]
BLAST of IVF0018685 vs. ExPASy Swiss-Prot
Match: P54164 (Uncharacterized protein YpeP OS=Bacillus subtilis (strain 168) OX=224308 GN=ypeP PE=4 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-06
Identity = 41/130 (31.54%), Postives = 67/130 (51.54%), Query Frame = 0 

Query: 78  TMMFDGATNEIGH--GVGAIL-MSPDGKWYPLTAKLYFDC-TNNMAEYEACSMGVRMAYE 137
           T+ FDG+ ++     G+G ++  S  G  + L     F   TNN AEY A    +R   E
Sbjct: 76  TVYFDGSFDKESELAGLGIVIYYSLGGTRHRLRKNKSFRLKTNNEAEYAALYEAIREVRE 135

Query: 138 MKIKK--LRVLGDSLLVVHQLNGEWETRDAKLIPYNDYIRTIAQTFDSI----TFEHVPR 197
           +   +  + + GDSL+V++QL+G W   D     +N+++  I    +S+    T+E + R
Sbjct: 136 LGASRNSITIKGDSLVVLNQLDGSWPCYDPS---HNEWLDKIEALLESLKLTPTYETIQR 195

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BLAST of IVF0018685 vs. ExPASy TrEMBL
Match: A0A5A7U7X5 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001520 PE=4 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 7.9e-110
Identity = 195/205 (95.12%), Postives = 200/205 (97.56%), Query Frame = 0 

Query: 16  RIAKWQVLLSEFDIVYITRKAIKGSVIADCLAELPIEDYEPMKFDFPDEDIMALVNTSSN 75
           RIAKWQVLLSEFDIVYITRKAIKGSVIADCLAELPIEDYEPMKFDFPDEDIMA++NTS N
Sbjct: 647 RIAKWQVLLSEFDIVYITRKAIKGSVIADCLAELPIEDYEPMKFDFPDEDIMAIINTSPN 706

Query: 76  TWTMMFDGATNEIGHGVGAILMSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMK 135
           TWTMMFDGATNEIGHGVG ILMSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMK
Sbjct: 707 TWTMMFDGATNEIGHGVGVILMSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMK 766

Query: 136 IKKLRVLGDSLLVVHQLNGEWETRDAKLIPYNDYIRTIAQTFDSITFEHVPRESNQVADA 195
           IKKLRVLGDS+LVVHQLNGEWETRDAKLIPYNDYI TIAQTF+SITFEHVPRESNQV DA
Sbjct: 767 IKKLRVLGDSMLVVHQLNGEWETRDAKLIPYNDYICTIAQTFNSITFEHVPRESNQVTDA 826

Query: 196 LATLSAMFNVAYSEEVQPIRMEKYR 221
           LATLSAMFNVAYSE VQPIRMEKY+
Sbjct: 827 LATLSAMFNVAYSENVQPIRMEKYK 851

[Close]
BLAST of IVF0018685 vs. ExPASy TrEMBL
Match: A0A1S3BH42 (uncharacterized protein LOC103489784 OS=Cucumis melo OX=3656 GN=LOC103489784 PE=4 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 1.2e-102
Identity = 183/220 (83.18%), Postives = 198/220 (90.00%), Query Frame = 0 

Query: 1   MDPIKYIFEKPSLSGRIAKWQVLLSEFDIVYITRKAIKGSVIADCLAELPIEDYEPMKFD 60
           MDPIKYIFEKPSLS +IAKW VLL EFDIVYITRKAIKGSVI DCL ELPIEDYEPMKFD
Sbjct: 64  MDPIKYIFEKPSLSEKIAKWHVLLLEFDIVYITRKAIKGSVIVDCLVELPIEDYEPMKFD 123

Query: 61  FPDEDIMALVNTSSNTWTMMFDGATNEIGHGVGAILMSPDGKWYPLTAKLYFDCTNNMAE 120
           F DEDIM +VNTSS+TWTMMFD ATN++GHG+G  LMSPD K YP T KLYFDCTNNM E
Sbjct: 124 FLDEDIMTIVNTSSDTWTMMFDRATNKVGHGMGVTLMSPDEKRYPFTTKLYFDCTNNMVE 183

Query: 121 YEACSMGVRMAYEMKIKKLRVLGDSLLVVHQLNGEWETRDAKLIPYNDYIRTIAQTFDSI 180
           Y+ACSMGVR+AYEMKIK LRVLGDSLLVVH+LNGE+ETRDAK IPYNDYI TIAQTFDSI
Sbjct: 184 YKACSMGVRIAYEMKIKNLRVLGDSLLVVHKLNGEYETRDAKFIPYNDYICTIAQTFDSI 243

Query: 181 TFEHVPRESNQVADALATLSAMFNVAYSEEVQPIRMEKYR 221
            FEH+P +SNQV D LATLSAMFNVAY+E+VQPIRMEKY+
Sbjct: 244 MFEHIPCQSNQVVDVLATLSAMFNVAYNEKVQPIRMEKYK 283

[Close]
BLAST of IVF0018685 vs. ExPASy TrEMBL
Match: A0A5D3BMZ2 (Protein NYNRIN-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00450 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 6.1e-102
Identity = 184/186 (98.92%), Postives = 185/186 (99.46%), Query Frame = 0 

Query: 34  RKAIKGSVIADCLAELPIEDYEPMKFDFPDEDIMALVNTSSNTWTMMFDGATNEIGHGVG 93
           +KAIKGSVIADCLAELPIEDYEPMKFDFPDEDIMALVNTSSNTWTMMFDGATNEIGHGV 
Sbjct: 593 KKAIKGSVIADCLAELPIEDYEPMKFDFPDEDIMALVNTSSNTWTMMFDGATNEIGHGVR 652

Query: 94  AILMSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKKLRVLGDSLLVVHQLN 153
           AILMSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKKLRVLGDSLLVVHQLN
Sbjct: 653 AILMSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKKLRVLGDSLLVVHQLN 712

Query: 154 GEWETRDAKLIPYNDYIRTIAQTFDSITFEHVPRESNQVADALATLSAMFNVAYSEEVQP 213
           GEWETRDAKLIPYNDYIRTIAQTFDSITFEHVPRESNQVADALATLSAMFNVAYSEEVQP
Sbjct: 713 GEWETRDAKLIPYNDYIRTIAQTFDSITFEHVPRESNQVADALATLSAMFNVAYSEEVQP 772

Query: 214 IRMEKY 220
           IRMEKY
Sbjct: 773 IRMEKY 778

[Close]
BLAST of IVF0018685 vs. ExPASy TrEMBL
Match: A0A5D3C389 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G003060 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 3.9e-101
Identity = 183/195 (93.85%), Postives = 188/195 (96.41%), Query Frame = 0 

Query: 26  EFDIVYITRKAIKGSVIADCLAELPIEDYEPMKFDFPDEDIMALVNTSSNTWTMMFDGAT 85
           +FDIVYITRKAIKGSVIA+CLAELPIEDYE MKFDFPDEDIMALVNTSSNTWTM FDGAT
Sbjct: 219 KFDIVYITRKAIKGSVIANCLAELPIEDYESMKFDFPDEDIMALVNTSSNTWTMKFDGAT 278

Query: 86  NEIGHGVGAILMSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKKLRVLGDS 145
           NEIGHGVGAILMS DGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMK+K LRVLGDS
Sbjct: 279 NEIGHGVGAILMSHDGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKVKTLRVLGDS 338

Query: 146 LLVVHQLNGEWETRDAKLIPYNDYIRTIAQTFDSITFEHVPRESNQVADALATLSAMFNV 205
           LL VHQLN EWETR+AKLIPYNDYIRTIAQTFDSITFEHVP ESNQVADALATLSAMFNV
Sbjct: 339 LLFVHQLNEEWETRNAKLIPYNDYIRTIAQTFDSITFEHVPHESNQVADALATLSAMFNV 398

Query: 206 AYSEEVQPIRMEKYR 221
           AYSEEVQPIRMEKY+
Sbjct: 399 AYSEEVQPIRMEKYK 413

[Close]
BLAST of IVF0018685 vs. ExPASy TrEMBL
Match: A0A5A7TZF3 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001550 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 5.1e-101
Identity = 181/187 (96.79%), Postives = 184/187 (98.40%), Query Frame = 0 

Query: 34  RKAIKGSVIADCLAELPIEDYEPMKFDFPDEDIMALVNTSSNTWTMMFDGATNEIGHGVG 93
           +KAIKGSVIADCL ELPIEDYEPMKFDFPDEDIMALVNTSSNTWTMMFDGATNEIGHGVG
Sbjct: 449 KKAIKGSVIADCLTELPIEDYEPMKFDFPDEDIMALVNTSSNTWTMMFDGATNEIGHGVG 508

Query: 94  AILMSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKKLRVLGDSLLVVHQLN 153
           AILMSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMK+KKLRVLGDSLLVVHQLN
Sbjct: 509 AILMSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKVKKLRVLGDSLLVVHQLN 568

Query: 154 GEWETRDAKLIPYNDYIRTIAQTFDSITFEHVPRESNQVADALATLSAMFNVAYSEEVQP 213
           GEWETRDAKLIPYNDYIRTIAQTF SITFEHVPRESNQVADALAT SAMFNVAYSEEVQP
Sbjct: 569 GEWETRDAKLIPYNDYIRTIAQTFYSITFEHVPRESNQVADALATFSAMFNVAYSEEVQP 628

Query: 214 IRMEKYR 221
           IRMEKY+
Sbjct: 629 IRMEKYK 635

[Close]
BLAST of IVF0018685 vs. NCBI nr
Match: KAA0049671.1 (uncharacterized protein E6C27_scaffold76G00060 [Cucumis melo var. makuwa] >TYK12201.1 uncharacterized protein E5676_scaffold106G001520 [Cucumis melo var. makuwa])

HSP 1 Score: 404 bits (1039), Expect = 6.37e-130
Identity = 195/205 (95.12%), Postives = 200/205 (97.56%), Query Frame = 0 

Query: 16  RIAKWQVLLSEFDIVYITRKAIKGSVIADCLAELPIEDYEPMKFDFPDEDIMALVNTSSN 75
           RIAKWQVLLSEFDIVYITRKAIKGSVIADCLAELPIEDYEPMKFDFPDEDIMA++NTS N
Sbjct: 647 RIAKWQVLLSEFDIVYITRKAIKGSVIADCLAELPIEDYEPMKFDFPDEDIMAIINTSPN 706

Query: 76  TWTMMFDGATNEIGHGVGAILMSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMK 135
           TWTMMFDGATNEIGHGVG ILMSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMK
Sbjct: 707 TWTMMFDGATNEIGHGVGVILMSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMK 766

Query: 136 IKKLRVLGDSLLVVHQLNGEWETRDAKLIPYNDYIRTIAQTFDSITFEHVPRESNQVADA 195
           IKKLRVLGDS+LVVHQLNGEWETRDAKLIPYNDYI TIAQTF+SITFEHVPRESNQV DA
Sbjct: 767 IKKLRVLGDSMLVVHQLNGEWETRDAKLIPYNDYICTIAQTFNSITFEHVPRESNQVTDA 826

Query: 196 LATLSAMFNVAYSEEVQPIRMEKYR 220
           LATLSAMFNVAYSE VQPIRMEKY+
Sbjct: 827 LATLSAMFNVAYSENVQPIRMEKYK 851

[Close]
BLAST of IVF0018685 vs. NCBI nr
Match: XP_008447313.1 (PREDICTED: uncharacterized protein LOC103489784 [Cucumis melo])

HSP 1 Score: 380 bits (977), Expect = 6.58e-130
Identity = 183/220 (83.18%), Postives = 198/220 (90.00%), Query Frame = 0 

Query: 1   MDPIKYIFEKPSLSGRIAKWQVLLSEFDIVYITRKAIKGSVIADCLAELPIEDYEPMKFD 60
           MDPIKYIFEKPSLS +IAKW VLL EFDIVYITRKAIKGSVI DCL ELPIEDYEPMKFD
Sbjct: 64  MDPIKYIFEKPSLSEKIAKWHVLLLEFDIVYITRKAIKGSVIVDCLVELPIEDYEPMKFD 123

Query: 61  FPDEDIMALVNTSSNTWTMMFDGATNEIGHGVGAILMSPDGKWYPLTAKLYFDCTNNMAE 120
           F DEDIM +VNTSS+TWTMMFD ATN++GHG+G  LMSPD K YP T KLYFDCTNNM E
Sbjct: 124 FLDEDIMTIVNTSSDTWTMMFDRATNKVGHGMGVTLMSPDEKRYPFTTKLYFDCTNNMVE 183

Query: 121 YEACSMGVRMAYEMKIKKLRVLGDSLLVVHQLNGEWETRDAKLIPYNDYIRTIAQTFDSI 180
           Y+ACSMGVR+AYEMKIK LRVLGDSLLVVH+LNGE+ETRDAK IPYNDYI TIAQTFDSI
Sbjct: 184 YKACSMGVRIAYEMKIKNLRVLGDSLLVVHKLNGEYETRDAKFIPYNDYICTIAQTFDSI 243

Query: 181 TFEHVPRESNQVADALATLSAMFNVAYSEEVQPIRMEKYR 220
            FEH+P +SNQV D LATLSAMFNVAY+E+VQPIRMEKY+
Sbjct: 244 MFEHIPCQSNQVVDVLATLSAMFNVAYNEKVQPIRMEKYK 283

[Close]
BLAST of IVF0018685 vs. NCBI nr
Match: TYK05800.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 375 bits (963), Expect = 6.08e-127
Identity = 183/195 (93.85%), Postives = 188/195 (96.41%), Query Frame = 0 

Query: 26  EFDIVYITRKAIKGSVIADCLAELPIEDYEPMKFDFPDEDIMALVNTSSNTWTMMFDGAT 85
           +FDIVYITRKAIKGSVIA+CLAELPIEDYE MKFDFPDEDIMALVNTSSNTWTM FDGAT
Sbjct: 219 KFDIVYITRKAIKGSVIANCLAELPIEDYESMKFDFPDEDIMALVNTSSNTWTMKFDGAT 278

Query: 86  NEIGHGVGAILMSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKKLRVLGDS 145
           NEIGHGVGAILMS DGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMK+K LRVLGDS
Sbjct: 279 NEIGHGVGAILMSHDGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKVKTLRVLGDS 338

Query: 146 LLVVHQLNGEWETRDAKLIPYNDYIRTIAQTFDSITFEHVPRESNQVADALATLSAMFNV 205
           LL VHQLN EWETR+AKLIPYNDYIRTIAQTFDSITFEHVP ESNQVADALATLSAMFNV
Sbjct: 339 LLFVHQLNEEWETRNAKLIPYNDYIRTIAQTFDSITFEHVPHESNQVADALATLSAMFNV 398

Query: 206 AYSEEVQPIRMEKYR 220
           AYSEEVQPIRMEKY+
Sbjct: 399 AYSEEVQPIRMEKYK 413

[Close]
BLAST of IVF0018685 vs. NCBI nr
Match: TYK00092.1 (protein NYNRIN-like [Cucumis melo var. makuwa])

HSP 1 Score: 378 bits (971), Expect = 1.03e-122
Identity = 186/195 (95.38%), Postives = 190/195 (97.44%), Query Frame = 0 

Query: 26  EFDIVYITRK-AIKGSVIADCLAELPIEDYEPMKFDFPDEDIMALVNTSSNTWTMMFDGA 85
           E  + Y+++K AIKGSVIADCLAELPIEDYEPMKFDFPDEDIMALVNTSSNTWTMMFDGA
Sbjct: 584 EQAVYYLSKKKAIKGSVIADCLAELPIEDYEPMKFDFPDEDIMALVNTSSNTWTMMFDGA 643

Query: 86  TNEIGHGVGAILMSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKKLRVLGD 145
           TNEIGHGV AILMSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKKLRVLGD
Sbjct: 644 TNEIGHGVRAILMSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKKLRVLGD 703

Query: 146 SLLVVHQLNGEWETRDAKLIPYNDYIRTIAQTFDSITFEHVPRESNQVADALATLSAMFN 205
           SLLVVHQLNGEWETRDAKLIPYNDYIRTIAQTFDSITFEHVPRESNQVADALATLSAMFN
Sbjct: 704 SLLVVHQLNGEWETRDAKLIPYNDYIRTIAQTFDSITFEHVPRESNQVADALATLSAMFN 763

Query: 206 VAYSEEVQPIRMEKY 219
           VAYSEEVQPIRMEKY
Sbjct: 764 VAYSEEVQPIRMEKY 778

[Close]
BLAST of IVF0018685 vs. NCBI nr
Match: KAA0046609.1 (hypothetical protein E6C27_scaffold114G001550 [Cucumis melo var. makuwa])

HSP 1 Score: 375 bits (963), Expect = 7.36e-122
Identity = 183/196 (93.37%), Postives = 189/196 (96.43%), Query Frame = 0 

Query: 26  EFDIVYITRK-AIKGSVIADCLAELPIEDYEPMKFDFPDEDIMALVNTSSNTWTMMFDGA 85
           E  + Y+++K AIKGSVIADCL ELPIEDYEPMKFDFPDEDIMALVNTSSNTWTMMFDGA
Sbjct: 440 EQAVYYLSKKKAIKGSVIADCLTELPIEDYEPMKFDFPDEDIMALVNTSSNTWTMMFDGA 499

Query: 86  TNEIGHGVGAILMSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKKLRVLGD 145
           TNEIGHGVGAILMSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMK+KKLRVLGD
Sbjct: 500 TNEIGHGVGAILMSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKVKKLRVLGD 559

Query: 146 SLLVVHQLNGEWETRDAKLIPYNDYIRTIAQTFDSITFEHVPRESNQVADALATLSAMFN 205
           SLLVVHQLNGEWETRDAKLIPYNDYIRTIAQTF SITFEHVPRESNQVADALAT SAMFN
Sbjct: 560 SLLVVHQLNGEWETRDAKLIPYNDYIRTIAQTFYSITFEHVPRESNQVADALATFSAMFN 619

Query: 206 VAYSEEVQPIRMEKYR 220
           VAYSEEVQPIRMEKY+
Sbjct: 620 VAYSEEVQPIRMEKYK 635

[Close]
BLAST of IVF0018685 vs. TAIR 10
Match: AT3G01410.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-14
Identity = 45/132 (34.09%), Postives = 70/132 (53.03%), Query Frame = 0 

Query: 74  SNTWTMMFDGAT--NEIGHGVGAILMSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVRMA 133
           +++ T+ FDGA+  N    G GA+L + D        +   + TNN+AEY A  +G+R A
Sbjct: 152 NDSCTIEFDGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLLGLRSA 211

Query: 134 YEMKIKKLRVLGDSLLVVHQLNGEWETRDAKLIPYNDYIRTIAQTFDSITFEHVPRESNQ 193
            +   K + VLGDS+LV  Q+ G W+T   K+       + +  +F +   +H+ RE N 
Sbjct: 212 LDKGFKNVHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKELMNSFKTFDIKHIAREKNS 271

Query: 194 VADALATLSAMF 204
            AD  A  SA+F
Sbjct: 272 EADKQAN-SAIF 282

[Close]
BLAST of IVF0018685 vs. TAIR 10
Match: AT3G01410.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-14
Identity = 45/132 (34.09%), Postives = 70/132 (53.03%), Query Frame = 0 

Query: 74  SNTWTMMFDGAT--NEIGHGVGAILMSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVRMA 133
           +++ T+ FDGA+  N    G GA+L + D        +   + TNN+AEY A  +G+R A
Sbjct: 152 NDSCTIEFDGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLLGLRSA 211

Query: 134 YEMKIKKLRVLGDSLLVVHQLNGEWETRDAKLIPYNDYIRTIAQTFDSITFEHVPRESNQ 193
            +   K + VLGDS+LV  Q+ G W+T   K+       + +  +F +   +H+ RE N 
Sbjct: 212 LDKGFKNVHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKELMNSFKTFDIKHIAREKNS 271

Query: 194 VADALATLSAMF 204
            AD  A  SA+F
Sbjct: 272 EADKQAN-SAIF 282

[Close]
BLAST of IVF0018685 vs. TAIR 10
Match: AT1G24090.1 (RNase H family protein )

HSP 1 Score: 64.3 bits (155), Expect = 1.4e-10
Identity = 42/130 (32.31%), Postives = 59/130 (45.38%), Query Frame = 0 

Query: 73  SSNTWTMMFDGAT--NEIGHGVGAILMSPDGKWYPLTAKLYFDCTNNMAEYEACSMGVRM 132
           S  T  + FDGA+  N    G  A+L + DG       +     TNN AEY A  +G++ 
Sbjct: 213 SDETCFIEFDGASKGNPGLSGAAAVLKTEDGSLICRVRQGLGIATNNAAEYHALILGLKY 272

Query: 133 AYEMKIKKLRVLGDSLLVVHQLNGEWETRDAKLIPYNDYIRTIAQTFDSITFEHVPRESN 192
           A E   K ++V GDS LV  Q+ G+W+     L   +   + +     S    HV R  N
Sbjct: 273 AIEKGYKNIKVKGDSKLVCMQIKGQWKVNHEVLAKLHKEAKLLCNKCVSFEISHVLRNLN 332

Query: 193 QVADALATLS 201
             AD  A L+
Sbjct: 333 ADADEQANLA 342

The following BLAST results are available for this feature:
BLAST of IVF0018685 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9HSF66.2e-1136.97Ribonuclease HI OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC... [more]
P9WLH52.9e-0833.33Bifunctional protein Rv2228c OS=Mycobacterium tuberculosis (strain ATCC 25618 / ... [more]
P9WLH42.9e-0833.33Uncharacterized protein MT2287 OS=Mycobacterium tuberculosis (strain CDC 1551 / ... [more]
P649562.9e-0833.33Uncharacterized protein Mb2253c OS=Mycobacterium bovis (strain ATCC BAA-935 / AF... [more]
P541641.2e-0631.54Uncharacterized protein YpeP OS=Bacillus subtilis (strain 168) OX=224308 GN=ypeP... [more]
BLAST of IVF0018685 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U7X57.9e-11095.12Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00152... [more]
A0A1S3BH421.2e-10283.18uncharacterized protein LOC103489784 OS=Cucumis melo OX=3656 GN=LOC103489784 PE=... [more]
A0A5D3BMZ26.1e-10298.92Protein NYNRIN-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G... [more]
A0A5D3C3893.9e-10193.85Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7TZF35.1e-10196.79Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G00155... [more]
BLAST of IVF0018685 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0049671.16.37e-13095.12uncharacterized protein E6C27_scaffold76G00060 [Cucumis melo var. makuwa] >TYK12... [more]
XP_008447313.16.58e-13083.18PREDICTED: uncharacterized protein LOC103489784 [Cucumis melo][more]
TYK05800.16.08e-12793.85Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
TYK00092.11.03e-12295.38protein NYNRIN-like [Cucumis melo var. makuwa][more]
KAA0046609.17.36e-12293.37hypothetical protein E6C27_scaffold114G001550 [Cucumis melo var. makuwa][more]
BLAST of IVF0018685 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G01410.11.2e-1434.09Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
AT3G01410.21.2e-1434.09Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
AT1G24090.11.4e-1032.31RNase H family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 78..211
e-value: 1.1E-31
score: 111.5
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 81..198
e-value: 9.1E-24
score: 83.6
IPR002156Ribonuclease H domainPROSITEPS50879RNASE_Hcoord: 73..202
score: 14.421508
NoneNo IPR availablePANTHERPTHR24559:SF322RNA-DIRECTED DNA POLYMERASE (REVERSE TRANSCRIPTASE), RIBONUCLEASE H-LIKE PROTEINcoord: 2..212
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 2..212
NoneNo IPR availableCDDcd09279RNase_HI_likecoord: 77..199
e-value: 1.05092E-45
score: 146.464
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 75..197

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0018685.1IVF0018685.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006310 DNA recombination
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component GO:0030430 host cell cytoplasm
cellular_component GO:0005634 nucleus
molecular_function GO:0003887 DNA-directed DNA polymerase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity
molecular_function GO:0003676 nucleic acid binding