IVF0018533 (gene) Melon (IVF77) v1

Overview
NameIVF0018533
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr01: 26869663 .. 26871902 (-)
RNA-Seq ExpressionIVF0018533
SyntenyIVF0018533
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAACCTCAAATCGTGCCCCGAGACATGTTTGGACGAGGGAGGAGGAGGGGACTCTTGTGGAATGTTTAATGGAGCTAGTGTCAATGGGGGGATGGAAATCAGATAATGGTACGTTCCGCCCAGGATACCTTGCGCAGTTGGTACGCATGATGGCGAAGAAACTACCTGGATGTCAGGTACGAGCAACAACTGTAATTGATTGTAGGATCAAGACACTGAAGCGAACGTTCCAGGCCATTGCCGAAATGCGGGGCCCAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCGTTGCGGAGAAGGAATTATTTGATAATTGGGTTAGGGTATGGAATATAATTTAAACGTGACACAACGTTCACAATGTACTTTTACTTAACAATTTTTCAATTAGTACTCATACGTGATTTTTTTTGTGCCCGCAGTCGCATCCTGCAGCGAAAGGACTCCTGAACAAATCATTCCCGTATTACGACGAACTTACATATGTATTTGGTCGCGATAGGGCGACCGGTCGGTTCGCTGAGACATTCGCGGACGTGGGGTCTAACGAGCCTGGTGGCGGATATGACAGATTTGATATGGGGGATGGAAACGAGGACTTCCCGCCCGTGTACAGCCAGGGAGTTGACATCTCGCAGGACGATGTACGTGCATCTCGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCAAGTGGATCGAAGAGGAAGAGGGGAAGTCAACGAGACTTCGATGTAGAAGCTATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGCAGATTGTGGAGTGGCCAGCACGCAACCTTGCAAATGACAACCACGTGCGCACAAAATTTTTCCGCATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTTCGGGGTTTCGTACTCATGCCTGAGGATGAAAGGGAGGGATTCTGTAGAGTCCTCCTACGAGACATAGAGAGATAGTTTCTGTTTGTACTAACGTGTGTTGCTTATTATTTCCTTACGTTTTTATCTGTATGATGTTGACTATTTATGCATTTTCTATTGTCAAGAACTTCTTTTCCTCATTGGTAATGTTTATTTTAAATGAAAGAAAATAGTCAGAATTTTCCAAAAGCGTTATAACGGCTATTTATATAGGTTTAAAATTGGATGACTTCGCTATCGCCGATACGAAATATTGAATACTTTTTTTATCTTTATAAAAATTAATTGTAATAAATTTATCACAATATGTTCACAATTTTATTTTAATTTGGGCAACTATATGTATTAATTTAATAACATTACACATACAACAAATAAAATAGAAGAATAAGACGGATTCGAGGATTTCGTAAAAAAGTATGCAATAATTTTTTTATGATATTTACAATTTAATTTAAAAATATTATACCACATAAAAAATTAATTAACCCAATCCATTTAACAATTTTCCCAAATAAAATTTATCACAAAATCCACATAAACCTACCCACCTAACCCTTCCCCCAAACACATTTTATCATAAAATTCTCATAAAACTACCCACCTAACCCTTCCCCCAAACACATTTTATCATAAAATCCCCATTAAACTACCCACCTAACTCTTCCCCCAAACACATCTTATCATAAAATCTCCACCTAACCCTTCCCCCAAACACATATTATCATAAAACTACCTTTTTAAACCCTTCCCCCAAACAAGAGTTATGATAAAACTAGGTTTAACTTAACACTAGTTTTATCTTAACACTAACCCTTCCCTAAATCAACTCTTCCCCCAAACGCACCCTTATAGTTTGGATTGGGTAATCTGGATTGATCTGGTTATCCATTACTTTGAACATATCTAAAGAGAGAGAAAAAAAAAAAGGAAAATGTATAGTTAGATTAGAGAAGATGAAAAGCATAAAGGTCGGAAAAGATGAGGTGAAAGTAAAACAAAAAAAACTATATCGATAGATAGATATCATGTAATCTAACAAATAAAATTAAGAAAGTTCTCCATTTCATTTAGAATTTGTCAAATTTTCATTAGTAAAATAAAATAGGGACCATTCACAACTATTTTCCGAATTTTAGAATAATTAAAAAATAAAAATAAAGTGTACTTTACTCTTTTTTTTAAAACAACATACTCCTATGTTATGTTGTGAAAATAAATTTAAATAAAAATAAAGGAATAAGAACATTTTATAA

mRNA sequence

ATGTCAACCTCAAATCGTGCCCCGAGACATGTTTGGACGAGGGAGGAGGAGGGGACTCTTGTGGAATGTTTAATGGAGCTAGTGTCAATGGGGGGATGGAAATCAGATAATGGTACGTTCCGCCCAGGATACCTTGCGCAGTTGGTACGCATGATGGCGAAGAAACTACCTGGATGTCAGGTACGAGCAACAACTGTAATTGATTGTAGGATCAAGACACTGAAGCGAACGTTCCAGGCCATTGCCGAAATGCGGGGCCCAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCGTTGCGGAGAAGGAATTATTTGATAATTGGGTTAGGAACATTTTATAA

Coding sequence (CDS)

ATGTCAACCTCAAATCGTGCCCCGAGACATGTTTGGACGAGGGAGGAGGAGGGGACTCTTGTGGAATGTTTAATGGAGCTAGTGTCAATGGGGGGATGGAAATCAGATAATGGTACGTTCCGCCCAGGATACCTTGCGCAGTTGGTACGCATGATGGCGAAGAAACTACCTGGATGTCAGGTACGAGCAACAACTGTAATTGATTGTAGGATCAAGACACTGAAGCGAACGTTCCAGGCCATTGCCGAAATGCGGGGCCCAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCGTTGCGGAGAAGGAATTATTTGATAATTGGGTTAGGAACATTTTATAA

Protein sequence

MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRNIL
Homology
[Close]
BLAST of IVF0018533 vs. ExPASy TrEMBL
Match: A0A5A7V6Q9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold99G00200 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.1e-61
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRN 115
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVR+
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRS 114

[Close]
BLAST of IVF0018533 vs. ExPASy TrEMBL
Match: A0A5D3CWL2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00640 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 6.0e-61
Identity = 112/114 (98.25%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMA+KLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRN 115
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVR+
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRS 114

[Close]
BLAST of IVF0018533 vs. ExPASy TrEMBL
Match: A0A5A7TRV1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold153G00290 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 6.0e-61
Identity = 112/114 (98.25%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMA+KLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRN 115
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVR+
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRS 114

[Close]
BLAST of IVF0018533 vs. ExPASy TrEMBL
Match: A0A5D3DCZ1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00020 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 6.0e-61
Identity = 112/114 (98.25%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMA+KLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRN 115
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVR+
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRS 114

[Close]
BLAST of IVF0018533 vs. ExPASy TrEMBL
Match: A0A5D3BCN9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001070 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 6.0e-61
Identity = 112/114 (98.25%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMA+KLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRN 115
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVR+
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRS 114

[Close]
BLAST of IVF0018533 vs. NCBI nr
Match: KAA0053616.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 239 bits (610), Expect = 1.37e-79
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMA+KLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVR 113
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVR
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVR 113

[Close]
BLAST of IVF0018533 vs. NCBI nr
Match: KAA0036099.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 239 bits (610), Expect = 1.37e-79
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMA+KLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVR 113
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVR
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVR 113

[Close]
BLAST of IVF0018533 vs. NCBI nr
Match: KAA0046637.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 238 bits (606), Expect = 5.57e-79
Identity = 111/113 (98.23%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMA+KLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVR 113
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVA+KELFDNWVR
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAKKELFDNWVR 113

[Close]
BLAST of IVF0018533 vs. NCBI nr
Match: KAA0050400.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 238 bits (607), Expect = 9.28e-78
Identity = 111/114 (97.37%), Postives = 113/114 (99.12%), Query Frame = 0 

Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMA+KLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRN 114
           VRATTVIDCRIKTLKRTFQ IAEMRGPACSGFGWNDEEKCIVAEKELFDNWVR+
Sbjct: 61  VRATTVIDCRIKTLKRTFQTIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRS 114

[Close]
BLAST of IVF0018533 vs. NCBI nr
Match: KAA0064022.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 241 bits (615), Expect = 1.11e-77
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRN 114
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVR+
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRS 114

The following BLAST results are available for this feature:
BLAST of IVF0018533 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0018533 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V6Q92.1e-6199.12Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CWL26.0e-6198.25Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TRV16.0e-6198.25Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DCZ16.0e-6198.25Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BCN96.0e-6198.25Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of IVF0018533 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0053616.11.37e-7999.12retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0036099.11.37e-7999.12retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0046637.15.57e-7998.23retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0050400.19.28e-7897.37retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0064022.11.11e-7799.12retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of IVF0018533 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024752Myb/SANT-like domainPFAMPF12776Myb_DNA-bind_3coord: 12..110
e-value: 1.6E-8
score: 35.4
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 2..113
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 2..113

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0018533.1IVF0018533.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane