IVF0018388 (gene) Melon (IVF77) v1

Overview
NameIVF0018388
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionNBS-LRR type resistance protein
Locationchr05: 22557485 .. 22557850 (-)
RNA-Seq ExpressionIVF0018388
SyntenyIVF0018388
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAATGGCTCGCGACAAGGGCTGTTGACACGTTGGATTGTCCACGCTACGGCTCAGGTCCTTCTAGGCTTCGTCGGATGGCGTATGTGAGAGGTTAGGCGACGACGCGAACGAAAGAGCGACGGCGAGCGACTGAAATGCAAGGATGTATCGACGTCTATCGCTGGGTTTGGACAGAAATAGTCGACCGAAGTCGAAAAGAGAAGTTCAAAAACAGAAGGGGCGACACTGGTGGTCGACGACGAAACTTGAACAAAGAAGATTATGAACGAGCGGCGGTCGAACTTTGCATAAGTGCTGGGGACGAATGGGTGCGCGACTGTGGTGGCTTGTGTGGACGGCAAAAGAATATAAGAGATTGA

mRNA sequence

ATGGAGGAATGGCTCGCGACAAGGGCTGTTGACACGTTGGATTGTCCACGCTACGGCTCAGGTCCTTCTAGGCTTCGTCGGATGGCGTATGTGAGAGAAATAGTCGACCGAAGTCGAAAAGAGAAGTTCAAAAACAGAAGGGGCGACACTGGTGGTCGACGACGAAACTTGAACAAAGAAGATTATGAACGAGCGGCGGTCGAACTTTGCATAAGTGCTGGGGACGAATGGGTGCGCGACTGTGGTGGCTTGTGTGGACGGCAAAAGAATATAAGAGATTGA

Coding sequence (CDS)

ATGGAGGAATGGCTCGCGACAAGGGCTGTTGACACGTTGGATTGTCCACGCTACGGCTCAGGTCCTTCTAGGCTTCGTCGGATGGCGTATGTGAGAGAAATAGTCGACCGAAGTCGAAAAGAGAAGTTCAAAAACAGAAGGGGCGACACTGGTGGTCGACGACGAAACTTGAACAAAGAAGATTATGAACGAGCGGCGGTCGAACTTTGCATAAGTGCTGGGGACGAATGGGTGCGCGACTGTGGTGGCTTGTGTGGACGGCAAAAGAATATAAGAGATTGA

Protein sequence

MEEWLATRAVDTLDCPRYGSGPSRLRRMAYVREIVDRSRKEKFKNRRGDTGGRRRNLNKEDYERAAVELCISAGDEWVRDCGGLCGRQKNIRD
Homology
[Close]
BLAST of IVF0018388 vs. ExPASy TrEMBL
Match: A0A5A7U1I3 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G001740 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 3.9e-47
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1   MEEWLATRAVDTLDCPRYGSGPSRLRRMAYVREIVDRSRKEKFKNRRGDTGGRRRNLNKE 60
           MEEWLATRAVDTLDCPRYGSGPSRLRRMAYVREIVDRSRKEKFKNRRGDTGGRRRNLNKE
Sbjct: 88  MEEWLATRAVDTLDCPRYGSGPSRLRRMAYVREIVDRSRKEKFKNRRGDTGGRRRNLNKE 147

Query: 61  DYERAAVELCISAGDEWVRDCGGLCGRQKNIRD 94
           DYERAAVELCISAGDEWVRDCGGLCGRQKNIRD
Sbjct: 148 DYERAAVELCISAGDEWVRDCGGLCGRQKNIRD 180

[Close]
BLAST of IVF0018388 vs. ExPASy TrEMBL
Match: A0A5A7U342 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G001590 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.5e-35
Identity = 77/93 (82.80%), Postives = 80/93 (86.02%), Query Frame = 0 

Query: 1   MEEWLATRAVDTLDCPRYGSGPSRLRRMAYVREIVDRSRKEKFKNRRGDTGGRRRNLNKE 60
           MEE LATRAV  LDCPRY SGPSRL R  YV EIVD+SRKEKF+N RGDTGGRRRNLN+E
Sbjct: 89  MEERLATRAVHALDCPRYDSGPSRLHRTTYVSEIVDQSRKEKFENGRGDTGGRRRNLNRE 148

Query: 61  DYERAAVELCISAGDEWVRDCGGLCGRQKNIRD 94
           DYER AVEL ISA DEWVRDCGGLCGRQKN RD
Sbjct: 149 DYERVAVELYISAVDEWVRDCGGLCGRQKNKRD 181

[Close]
BLAST of IVF0018388 vs. ExPASy TrEMBL
Match: A0A5D3BCV4 (Putative invertase inhibitor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00900 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.0e-06
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 1  MEEWLATRAVDTLDCPRYGSGPSRLRRMAYVR 33
          ME+WLATRAV  LD PRYGSGPSRLRRMAYVR
Sbjct: 68 MEKWLATRAVHALDFPRYGSGPSRLRRMAYVR 99

[Close]
BLAST of IVF0018388 vs. NCBI nr
Match: KAA0048096.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 194 bits (494), Expect = 1.94e-61
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1   MEEWLATRAVDTLDCPRYGSGPSRLRRMAYVREIVDRSRKEKFKNRRGDTGGRRRNLNKE 60
           MEEWLATRAVDTLDCPRYGSGPSRLRRMAYVREIVDRSRKEKFKNRRGDTGGRRRNLNKE
Sbjct: 88  MEEWLATRAVDTLDCPRYGSGPSRLRRMAYVREIVDRSRKEKFKNRRGDTGGRRRNLNKE 147

Query: 61  DYERAAVELCISAGDEWVRDCGGLCGRQKNIRD 93
           DYERAAVELCISAGDEWVRDCGGLCGRQKNIRD
Sbjct: 148 DYERAAVELCISAGDEWVRDCGGLCGRQKNIRD 180

[Close]
BLAST of IVF0018388 vs. NCBI nr
Match: KAA0048085.1 (hypothetical protein E6C27_scaffold385G001590 [Cucumis melo var. makuwa])

HSP 1 Score: 155 bits (391), Expect = 9.25e-46
Identity = 77/93 (82.80%), Postives = 80/93 (86.02%), Query Frame = 0 

Query: 1   MEEWLATRAVDTLDCPRYGSGPSRLRRMAYVREIVDRSRKEKFKNRRGDTGGRRRNLNKE 60
           MEE LATRAV  LDCPRY SGPSRL R  YV EIVD+SRKEKF+N RGDTGGRRRNLN+E
Sbjct: 89  MEERLATRAVHALDCPRYDSGPSRLHRTTYVSEIVDQSRKEKFENGRGDTGGRRRNLNRE 148

Query: 61  DYERAAVELCISAGDEWVRDCGGLCGRQKNIRD 93
           DYER AVEL ISA DEWVRDCGGLCGRQKN RD
Sbjct: 149 DYERVAVELYISAVDEWVRDCGGLCGRQKNKRD 181

[Close]
BLAST of IVF0018388 vs. NCBI nr
Match: TYJ96451.1 (putative invertase inhibitor [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 4.32e-08
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 1  MEEWLATRAVDTLDCPRYGSGPSRLRRMAYVR 32
          ME+WLATRAV  LD PRYGSGPSRLRRMAYVR
Sbjct: 68 MEKWLATRAVHALDFPRYGSGPSRLRRMAYVR 99

The following BLAST results are available for this feature:
BLAST of IVF0018388 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0018388 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U1I33.9e-47100.00NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7U3423.5e-3582.80Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BCV42.0e-0687.50Putative invertase inhibitor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
BLAST of IVF0018388 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0048096.11.94e-61100.00NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
KAA0048085.19.25e-4682.80hypothetical protein E6C27_scaffold385G001590 [Cucumis melo var. makuwa][more]
TYJ96451.14.32e-0887.50putative invertase inhibitor [Cucumis melo var. makuwa][more]
BLAST of IVF0018388 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0018388.1IVF0018388.1mRNA