IVF0018241 (gene) Melon (IVF77) v1

Overview


Name	IVF0018241
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon 17.6
Location	chr05: 6745399 .. 6745659 (-)
RNA-Seq Expression	IVF0018241
Synteny	IVF0018241

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACTTAATGCATTTAGGCGTATGCCATTTGGTCTTTGTAATGCACCGGGCACATTCCAACGTTGCATGATGAGCATATTTTCCGACTTTATTGAAAAATTCATTGAAGTTTTCATGGATGATTTCACAGTTTATGGTGATAGTTTTTATGCATGTTTAGCCAGTCTAGAATTAATTCTAAATAGATGCATAGAAACTAACCTTGTCTTGAATTATGAAAAGTGTCATTTCATGGTGTCTCATGGTATAGTTTTATGA

mRNA sequence

ATGGAACTTAATGCATTTAGGCGTATGCCATTTGGTCTTTGTAATGCACCGGGCACATTCCAACGTTGCATGATGAGCATATTTTCCGACTTTATTGAAAAATTCATTGAAGTTTTCATGGATGATTTCACAGTTTATGAATTAATTCTAAATAGATGCATAGAAACTAACCTTGTCTTGAATTATGAAAAGTGTCATTTCATGGTGTCTCATGGTATAGTTTTATGA

Coding sequence (CDS)

ATGGAACTTAATGCATTTAGGCGTATGCCATTTGGTCTTTGTAATGCACCGGGCACATTCCAACGTTGCATGATGAGCATATTTTCCGACTTTATTGAAAAATTCATTGAAGTTTTCATGGATGATTTCACAGTTTATGAATTAATTCTAAATAGATGCATAGAAACTAACCTTGTCTTGAATTATGAAAAGTGTCATTTCATGGTGTCTCATGGTATAGTTTTATGA

Protein sequence

MELNAFRRMPFGLCNAPGTFQRCMMSIFSDFIEKFIEVFMDDFTVYELILNRCIETNLVLNYEKCHFMVSHGIVL

Homology

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BLAST of IVF0018241 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.4e-07
Identity = 27/74 (36.49%), Postives = 40/74 (54.05%), Query Frame = 0


Query: 6   FRRMPFGLCNAPGTFQRCMMSIFSDFIEKFIEVFMDDFTVY-----------ELILNRCI 65
           + RMPFGL NAP TFQRCM +I    + K   V++DD  ++           +L+  +  
Sbjct: 330 YLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLA 389

Query: 66  ETNLVLNYEKCHFM 69
           + NL L  +KC F+
Sbjct: 390 DANLKLQLDKCEFL 403

[Close]

BLAST of IVF0018241 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.3e-07
Identity = 28/74 (37.84%), Postives = 38/74 (51.35%), Query Frame = 0


Query: 6   FRRMPFGLCNAPGTFQRCMMSIFSDFIEKFIEVFMDDFTVYE-----------LILNRCI 65
           + RMPFGL NAP TFQRCM  I    + K   V++DD  V+            L+  +  
Sbjct: 331 YLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLA 390

Query: 66  ETNLVLNYEKCHFM 69
           + NL L  +KC F+
Sbjct: 391 KANLKLQLDKCEFL 404

[Close]

BLAST of IVF0018241 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 4.9e-05
Identity = 28/74 (37.84%), Postives = 38/74 (51.35%), Query Frame = 0


Query: 6   FRRMPFGLCNAPGTFQRCMMSIFSDFIEKFIEVFMDDFTVY-----------ELILNRCI 65
           F R+PFGL NAP  FQR +  I  + I K   V++DD  V+            L+L    
Sbjct: 247 FLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLS 306

Query: 66  ETNLVLNYEKCHFM 69
           + NL +N EK HF+
Sbjct: 307 KANLQVNLEKSHFL 320

[Close]

BLAST of IVF0018241 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 47.0 bits (110), Expect = 1.1e-04
Identity = 25/70 (35.71%), Postives = 36/70 (51.43%), Query Frame = 0


Query: 9   MPFGLCNAPGTFQRCMMSIFSDFIEKFIEVFMDDFTVY-----------ELILNRCIETN 68
           MPFGL NAP TF R M   F D   +F+ V++DD  ++           + +L R    N
Sbjct: 718 MPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNEN 777

[Close]

BLAST of IVF0018241 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 1.1e-04
Identity = 25/70 (35.71%), Postives = 36/70 (51.43%), Query Frame = 0


Query: 9   MPFGLCNAPGTFQRCMMSIFSDFIEKFIEVFMDDFTVY-----------ELILNRCIETN 68
           MPFGL NAP TF R M   F D   +F+ V++DD  ++           + +L R    N
Sbjct: 744 MPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNEN 803

[Close]

BLAST of IVF0018241 vs. ExPASy TrEMBL
Match: A0A445LR48 (Transposon Ty3-G Gag-Pol polyprotein OS=Glycine soja OX=3848 GN=D0Y65_004303 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.5e-25
Identity = 61/82 (74.39%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 5   AFRRMPFGLCNAPGTFQRCMMSIFSDFIEKFIEVFMDDFTVY-----------ELILNRC 64
           A+RRMPFGLCNAPGTFQRCM+SIFSDF+E  IEVFMDDFTVY           E +LNRC
Sbjct: 262 AYRRMPFGLCNAPGTFQRCMISIFSDFLENCIEVFMDDFTVYGSSFDGCLNSLEKVLNRC 321

Query: 65  IETNLVLNYEKCHFMVSHGIVL 76
           IETNLVLN+EKCHFMV  GIVL
Sbjct: 322 IETNLVLNFEKCHFMVEQGIVL 343

[Close]

BLAST of IVF0018241 vs. ExPASy TrEMBL
Match: A0A445EY74 (Reverse transcriptase OS=Glycine soja OX=3848 GN=D0Y65_055343 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.5e-25
Identity = 61/82 (74.39%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 5   AFRRMPFGLCNAPGTFQRCMMSIFSDFIEKFIEVFMDDFTVY-----------ELILNRC 64
           A+RRMPFGLCNAPGTFQRCM+SIFSDF+E  IEVFMDDFTVY           E +LNRC
Sbjct: 638 AYRRMPFGLCNAPGTFQRCMISIFSDFLENCIEVFMDDFTVYGSSFDGCLNSLEKVLNRC 697

Query: 65  IETNLVLNYEKCHFMVSHGIVL 76
           IETNLVLN+EKCHFMV  GIVL
Sbjct: 698 IETNLVLNFEKCHFMVEQGIVL 719

[Close]

BLAST of IVF0018241 vs. ExPASy TrEMBL
Match: A0A392P218 (Reverse transcriptase domain-containing protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.0e-25
Identity = 62/82 (75.61%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 5   AFRRMPFGLCNAPGTFQRCMMSIFSDFIEKFIEVFMDDFTVY-----------ELILNRC 64
           A+RRMPFGLCNAPGTFQRCM+SIFSDFIE  +EVFMDDFTVY            LIL RC
Sbjct: 129 AYRRMPFGLCNAPGTFQRCMISIFSDFIENCMEVFMDDFTVYGSSFDACLQSLNLILERC 188

Query: 65  IETNLVLNYEKCHFMVSHGIVL 76
           IETNLVLNYEKCHFMV  GIVL
Sbjct: 189 IETNLVLNYEKCHFMVEQGIVL 210

[Close]

BLAST of IVF0018241 vs. ExPASy TrEMBL
Match: A0A445FCZ8 (Reverse transcriptase OS=Glycine soja OX=3848 GN=D0Y65_050671 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.0e-25
Identity = 61/82 (74.39%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 5   AFRRMPFGLCNAPGTFQRCMMSIFSDFIEKFIEVFMDDFTVY-----------ELILNRC 64
           A+RRMPFGLCNAPGTFQRCM+SIFSDF+E  IEVFMDDFTVY           E +LNRC
Sbjct: 655 AYRRMPFGLCNAPGTFQRCMISIFSDFLENCIEVFMDDFTVYGSSFDGCLNSLEKVLNRC 714

Query: 65  IETNLVLNYEKCHFMVSHGIVL 76
           IETNLVLN+EKCHFMV  GIVL
Sbjct: 715 IETNLVLNFEKCHFMVEKGIVL 736

[Close]

BLAST of IVF0018241 vs. ExPASy TrEMBL
Match: A0A151QKV4 (Retrovirus-related Pol polyprotein from transposon 17.6 (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_049680 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.6e-25
Identity = 60/82 (73.17%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 5  AFRRMPFGLCNAPGTFQRCMMSIFSDFIEKFIEVFMDDFTVY-----------ELILNRC 64
          A+RRMPFGLCNAPGTFQRCM+SIFSDF+E  IEVFMDDFTVY           + +LNRC
Sbjct: 14 AYRRMPFGLCNAPGTFQRCMLSIFSDFLENCIEVFMDDFTVYGSSFDACLDSLDRVLNRC 73

Query: 65 IETNLVLNYEKCHFMVSHGIVL 76
          IETNLVLN+EKCHFMV  GIVL
Sbjct: 74 IETNLVLNFEKCHFMVEQGIVL 95

[Close]

BLAST of IVF0018241 vs. NCBI nr
Match: RYA56915.1 (hypothetical protein DD596_25350, partial [Enterobacter cloacae complex sp. 4DZ3-28B])

HSP 1 Score: 125 bits (314), Expect = 2.66e-34
Identity = 61/82 (74.39%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 5   AFRRMPFGLCNAPGTFQRCMMSIFSDFIEKFIEVFMDDFTVY-----------ELILNRC 64
           A+RRMPFGLCNAPGTFQRCM+SIFSDF+E  IEVFMDDFTVY           E +LNRC
Sbjct: 23  AYRRMPFGLCNAPGTFQRCMISIFSDFLENCIEVFMDDFTVYGSSFDICLDSLEKVLNRC 82

Query: 65  IETNLVLNYEKCHFMVSHGIVL 75
           IETNLVLN+EKCHFMV  GIVL
Sbjct: 83  IETNLVLNFEKCHFMVEQGIVL 104

[Close]

BLAST of IVF0018241 vs. NCBI nr
Match: KYP49023.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cajanus cajan])

HSP 1 Score: 123 bits (308), Expect = 4.34e-34
Identity = 59/82 (71.95%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 5   AFRRMPFGLCNAPGTFQRCMMSIFSDFIEKFIEVFMDDFTVY-----------ELILNRC 64
           A+RRMPFGLCNAPGTFQRCM+SIFS+F+E  IEVFMDDFTVY           + +LNRC
Sbjct: 43  AYRRMPFGLCNAPGTFQRCMLSIFSEFLENCIEVFMDDFTVYGSSFDTCLDSLDRVLNRC 102

Query: 65  IETNLVLNYEKCHFMVSHGIVL 75
           IETNLVLN+EKCHFMV  GIVL
Sbjct: 103 IETNLVLNFEKCHFMVEQGIVL 124

[Close]

BLAST of IVF0018241 vs. NCBI nr
Match: WP_165295147.1 (RNA-directed DNA polymerase, partial [Enterobacter cloacae complex sp. 4DZ3-28B])

HSP 1 Score: 125 bits (314), Expect = 4.58e-34
Identity = 61/82 (74.39%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 5   AFRRMPFGLCNAPGTFQRCMMSIFSDFIEKFIEVFMDDFTVY-----------ELILNRC 64
           A+RRMPFGLCNAPGTFQRCM+SIFSDF+E  IEVFMDDFTVY           E +LNRC
Sbjct: 43  AYRRMPFGLCNAPGTFQRCMISIFSDFLENCIEVFMDDFTVYGSSFDICLDSLEKVLNRC 102

Query: 65  IETNLVLNYEKCHFMVSHGIVL 75
           IETNLVLN+EKCHFMV  GIVL
Sbjct: 103 IETNLVLNFEKCHFMVEQGIVL 124

[Close]

BLAST of IVF0018241 vs. NCBI nr
Match: MCI06103.1 (hypothetical protein [Trifolium medium])

HSP 1 Score: 125 bits (313), Expect = 4.97e-33
Identity = 62/82 (75.61%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 5   AFRRMPFGLCNAPGTFQRCMMSIFSDFIEKFIEVFMDDFTVY-----------ELILNRC 64
           A+RRMPFGLCNAPGTFQRCM+SIFSDFIE  +EVFMDDFTVY            LIL RC
Sbjct: 129 AYRRMPFGLCNAPGTFQRCMISIFSDFIENCMEVFMDDFTVYGSSFDACLQSLNLILERC 188

Query: 65  IETNLVLNYEKCHFMVSHGIVL 75
           IETNLVLNYEKCHFMV  GIVL
Sbjct: 189 IETNLVLNYEKCHFMVEQGIVL 210

[Close]

BLAST of IVF0018241 vs. NCBI nr
Match: KYP37139.1 (Retrovirus-related Pol polyprotein from transposon 297 family, partial [Cajanus cajan])

HSP 1 Score: 119 bits (298), Expect = 1.01e-32
Identity = 58/82 (70.73%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 5  AFRRMPFGLCNAPGTFQRCMMSIFSDFIEKFIEVFMDDFTVY-----------ELILNRC 64
          ++RRMPFGLCNAPGTFQRCM+SIFSDF+E  IEVFMDDFTVY           + +LNRC
Sbjct: 11 SYRRMPFGLCNAPGTFQRCMLSIFSDFLENCIEVFMDDFTVYGSSFDACLDSLDRVLNRC 70

Query: 65 IETNLVLNYEKCHFMVSHGIVL 75
          IETNLVLN+EK HFMV  GIVL
Sbjct: 71 IETNLVLNFEKFHFMVEQGIVL 92

The following BLAST results are available for this feature:

BLAST of IVF0018241 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	2.4e-07	36.49	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	5.3e-07	37.84	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	4.9e-05	37.84	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
Q99315	1.1e-04	35.71	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	1.1e-04	35.71	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of IVF0018241 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A445LR48	1.5e-25	74.39	Transposon Ty3-G Gag-Pol polyprotein OS=Glycine soja OX=3848 GN=D0Y65_004303 PE=...	[more]
A0A445EY74	1.5e-25	74.39	Reverse transcriptase OS=Glycine soja OX=3848 GN=D0Y65_055343 PE=4 SV=1	[more]
A0A392P218	2.0e-25	75.61	Reverse transcriptase domain-containing protein (Fragment) OS=Trifolium medium O...	[more]
A0A445FCZ8	2.0e-25	74.39	Reverse transcriptase OS=Glycine soja OX=3848 GN=D0Y65_050671 PE=4 SV=1	[more]
A0A151QKV4	2.6e-25	73.17	Retrovirus-related Pol polyprotein from transposon 17.6 (Fragment) OS=Cajanus ca...	[more]

BLAST of IVF0018241 vs. NCBI nr


Match Name	E-value	Identity	Description
RYA56915.1	2.66e-34	74.39	hypothetical protein DD596_25350, partial [Enterobacter cloacae complex sp. 4DZ3...	[more]
KYP49023.1	4.34e-34	71.95	Retrovirus-related Pol polyprotein from transposon 17.6 [Cajanus cajan]	[more]
WP_165295147.1	4.58e-34	74.39	RNA-directed DNA polymerase, partial [Enterobacter cloacae complex sp. 4DZ3-28B]	[more]
MCI06103.1	4.97e-33	75.61	hypothetical protein [Trifolium medium]	[more]
KYP37139.1	1.01e-32	70.73	Retrovirus-related Pol polyprotein from transposon 297 family, partial [Cajanus ...	[more]

BLAST of IVF0018241 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 6..68 e-value: 3.2E-7 score: 30.1
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 4..75 e-value: 1.1E-16 score: 62.9
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 6..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0018241.1	IVF0018241.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0008445	D-aspartate oxidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity