IVF0017219 (gene) Melon (IVF77) v1

Overview


Name	IVF0017219
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Self-incompatibility protein 2
Location	chr06: 17576791 .. 17576997 (-)
RNA-Seq Expression	IVF0017219
Synteny	IVF0017219

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGAGAGTTATCGAGGCGAAGAAGTTCTATCACAAAAAGAGTTAGGCAATCTTGTGGAGTAACGCGAAGCAAAGTCGAAAAAGAAGTGGGAGGTTGTGGTCAGTTGTGAGAAAGAGAAGGCAAGGAAGAAGAAGGCGGGAAAAAGAGTTTGAGATCCCAAGAAGGAGAAGGCGAGGAAGATTTTAGCTTCTCGATAAGATAA

mRNA sequence

ATGGAGGGAGAGTTATCGAGGCGAAGAAGTTCTATCACAAAAAGAGTTAGGCAATCTTGTGGAGTAACGCGAAGCAAAGTCGAAAAAGAAGTGGGAGGTTGTGAAGAAGGCGGGAAAAAGAGTTTGAGATCCCAAGAAGGAGAAGGCGAGGAAGATTTTAGCTTCTCGATAAGATAA

Coding sequence (CDS)

ATGGAGGGAGAGTTATCGAGGCGAAGAAGTTCTATCACAAAAAGAGTTAGGCAATCTTGTGGAGTAACGCGAAGCAAAGTCGAAAAAGAAGTGGGAGGTTGTGAAGAAGGCGGGAAAAAGAGTTTGAGATCCCAAGAAGGAGAAGGCGAGGAAGATTTTAGCTTCTCGATAAGATAA

Protein sequence

MEGELSRRRSSITKRVRQSCGVTRSKVEKEVGGCEEGGKKSLRSQEGEGEEDFSFSIR

Homology

[Close]

BLAST of IVF0017219 vs. ExPASy TrEMBL
Match: A0A5D3DZ59 (Self-incompatibility protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2406G00250 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.4e-04
Identity = 38/59 (64.41%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 1  MEGELSRRRSSITKRVRQSCGVTRSKVEKEVGGC----------EEGGKKSLRSQEGEG 50
          MEGELSRRRSSIT RVRQS  V   +V KEVGGC          EEGGKKSL S+E EG
Sbjct: 1  MEGELSRRRSSIT-RVRQSGKVMGIEVRKEVGGCGLSLEREIEKEEGGKKSLVSREREG 58

[Close]

BLAST of IVF0017219 vs. NCBI nr
Match: KAA0040454.1 (self-incompatibility protein 2 [Cucumis melo var. makuwa] >TYK28902.1 self-incompatibility protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 53.5 bits (127), Expect = 2.25e-07
Identity = 38/59 (64.41%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 1  MEGELSRRRSSITKRVRQSCGVTRSKVEKEVGGC----------EEGGKKSLRSQEGEG 49
          MEGELSRRRSSIT RVRQS  V   +V KEVGGC          EEGGKKSL S+E EG
Sbjct: 1  MEGELSRRRSSIT-RVRQSGKVMGIEVRKEVGGCGLSLEREIEKEEGGKKSLVSREREG 58

The following BLAST results are available for this feature:

BLAST of IVF0017219 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0017219 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DZ59	4.4e-04	64.41	Self-incompatibility protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of IVF0017219 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040454.1	2.25e-07	64.41	self-incompatibility protein 2 [Cucumis melo var. makuwa] >TYK28902.1 self-incom...	[more]

BLAST of IVF0017219 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0017219.1	IVF0017219.1	mRNA