IVF0016940 (gene) Melon (IVF77) v1

Overview
NameIVF0016940
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr04: 10900207 .. 10900431 (+)
RNA-Seq ExpressionIVF0016940
SyntenyIVF0016940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAGGACCATACTTTAGGAACTGGAATCAAGTACGAGGCAACAACATCTAAGAATGATGAACAAAGTTATCAAGAAACGTTCCAAAATTTTATGGAATCTATGGAAACAATCCAAATCAAGTCTGATAAAAAGTATAGCATTGAAAGATTAAAAATTTTAGGTGCTACGGTATTTGAAGGATCTCTAGATCCAGCTGATGCAAAAGCATGCTTGATTTAA

mRNA sequence

ATGGAAGAGGACCATACTTTAGGAACTGGAATCAAGTACGAGGCAACAACATCTAAGAATGATGAACAAAGTTATCAAGAAACGTTCCAAAATTTTATGGAATCTATGGAAACAATCCAAATCAAGTCTGATAAAAAGTATAGCATTGAAAGATTAAAAATTTTAGGTGCTACGGTATTTGAAGGATCTCTAGATCCAGCTGATGCAAAAGCATGCTTGATTTAA

Coding sequence (CDS)

ATGGAAGAGGACCATACTTTAGGAACTGGAATCAAGTACGAGGCAACAACATCTAAGAATGATGAACAAAGTTATCAAGAAACGTTCCAAAATTTTATGGAATCTATGGAAACAATCCAAATCAAGTCTGATAAAAAGTATAGCATTGAAAGATTAAAAATTTTAGGTGCTACGGTATTTGAAGGATCTCTAGATCCAGCTGATGCAAAAGCATGCTTGATTTAA

Protein sequence

MEEDHTLGTGIKYEATTSKNDEQSYQETFQNFMESMETIQIKSDKKYSIERLKILGATVFEGSLDPADAKACLI
Homology
BLAST of IVF0016940 vs. ExPASy TrEMBL
Match: A0A5A7U2K3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G001070 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.7e-05
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 0

Query: 25 YQETFQNFMESMETIQIKSDKKYSIERLKILGAT-VFEGSLDPADAKACL 74
          YQET Q FM+S+  +Q++SDKK+S ERLK L AT VFEGS+DPADA+  L
Sbjct: 6  YQETVQKFMKSLGLVQVRSDKKHS-ERLKPLSATLVFEGSIDPADAEVWL 54

BLAST of IVF0016940 vs. ExPASy TrEMBL
Match: A0A5A7V5X4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001720 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.3e-05
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 0

Query: 21 DEQSYQETFQNFMESMETIQIKSDKKYSIERLKILGATVFEGSLDPADAKACL 74
          +E+ YQ+  Q  +ES+ ++Q +S KK++IERLK LGA VFEGS DP D +  L
Sbjct: 2  EERGYQQMVQKLVESLSSVQARSKKKHNIERLKSLGAVVFEGSTDPIDVEVWL 54

BLAST of IVF0016940 vs. ExPASy TrEMBL
Match: A0A5D3BPE1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00320 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.3e-05
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 0

Query: 21 DEQSYQETFQNFMESMETIQIKSDKKYSIERLKILGATVFEGSLDPADAKACL 74
          +E+ YQ+  Q  +ES+ ++Q +S KK++IERLK LGA VFEGS DP D +  L
Sbjct: 2  EERGYQQMVQKLVESLSSVQARSKKKHNIERLKSLGAVVFEGSTDPIDVEVWL 54

BLAST of IVF0016940 vs. NCBI nr
Match: KAA0047659.1 (uncharacterized protein E6C27_scaffold115G001520 [Cucumis melo var. makuwa] >TYK08315.1 uncharacterized protein E5676_scaffold648G001070 [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 5.27e-08
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 0

Query: 25 YQETFQNFMESMETIQIKSDKKYSIERLKILGAT-VFEGSLDPADAKACL 73
          YQET Q FM+S+  +Q++SDKK+S ERLK L AT VFEGS+DPADA+  L
Sbjct: 6  YQETVQKFMKSLGLVQVRSDKKHS-ERLKPLSATLVFEGSIDPADAEVWL 54

BLAST of IVF0016940 vs. NCBI nr
Match: TYK01187.1 (uncharacterized protein E5676_scaffold2044G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 1.55e-07
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 0

Query: 21 DEQSYQETFQNFMESMETIQIKSDKKYSIERLKILGATVFEGSLDPADAKACL 73
          +E+ YQ+  Q  +ES+ ++Q +S KK++IERLK LGA VFEGS DP D +  L
Sbjct: 2  EERGYQQMVQKLVESLSSVQARSKKKHNIERLKSLGAVVFEGSTDPIDVEVWL 54

BLAST of IVF0016940 vs. NCBI nr
Match: KAA0062654.1 (uncharacterized protein E6C27_scaffold79G001720 [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 1.55e-07
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 0

Query: 21 DEQSYQETFQNFMESMETIQIKSDKKYSIERLKILGATVFEGSLDPADAKACL 73
          +E+ YQ+  Q  +ES+ ++Q +S KK++IERLK LGA VFEGS DP D +  L
Sbjct: 2  EERGYQQMVQKLVESLSSVQARSKKKHNIERLKSLGAVVFEGSTDPIDVEVWL 54

BLAST of IVF0016940 vs. NCBI nr
Match: WP_217833179.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 49.3 bits (116), Expect = 1.06e-05
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 0

Query: 21 DEQSYQETFQNFMESMETIQIKSDKKYSIERLKILGATVFEGSLDPADAKA 71
          +EQ +    Q    S+ +++   +KKYSIERLK LGAT FEG++DP +A+A
Sbjct: 16 EEQLFTRIAQRLAASIGSVESDPEKKYSIERLKALGATTFEGTVDPVEAEA 66

BLAST of IVF0016940 vs. NCBI nr
Match: KAA0063184.1 (uncharacterized protein E6C27_scaffold381G00720 [Cucumis melo var. makuwa])

HSP 1 Score: 50.8 bits (120), Expect = 1.82e-05
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 0

Query: 30 QNFMESMETIQIKSDKKYSIERLKILGATVFEGSLDPADAKACL 73
          Q  +ES+  +Q+K  K ++IERLK LG TVFEGS DPA+A+A L
Sbjct: 3  QKLVESLGLVQVKFRKNHNIERLKSLGVTVFEGSTDPANAEAWL 46

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U2K31.7e-0564.00Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7V5X42.3e-0550.94Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BPE12.3e-0550.94Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0047659.15.27e-0864.00uncharacterized protein E6C27_scaffold115G001520 [Cucumis melo var. makuwa] >TYK... [more]
TYK01187.11.55e-0750.94uncharacterized protein E5676_scaffold2044G00320 [Cucumis melo var. makuwa][more]
KAA0062654.11.55e-0750.94uncharacterized protein E6C27_scaffold79G001720 [Cucumis melo var. makuwa][more]
WP_217833179.11.06e-0547.06hypothetical protein, partial [Synechococcus sp. PCC 7002][more]
KAA0063184.11.82e-0556.82uncharacterized protein E6C27_scaffold381G00720 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0016940.1IVF0016940.1mRNA