IVF0016863 (gene) Melon (IVF77) v1

Overview


Name	IVF0016863
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	60S ribosomal protein L27
Location	chr07: 4776066 .. 4776473 (+)
RNA-Seq Expression	IVF0016863
Synteny	IVF0016863

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAATTCATCAAGCCGAACAAAGCTGTTATTGTTCTCCAAGGCCGATTTGCCGGCCGGAAAGCTGTAATCGTCCGAAACTTTGATGAAGGAACCCGCGACCGGCCCTACGGCCATTGTTTGGTAGCAGGGATGAAAAAGTACCCGAGCAAGGTCATTCGCAAAGATTCAAAGAAAAAGACAGATAAAAAATCGAGAGTGAAAGCATTCATCAAGCTTGTGAATTACCAGCACATTATGCCGACGAGGTACACGCTCGACGTTGATCTCAAGGATGTGGTTAATGTGGATTGCTTACAGTCGAAAGTGTCGAAGGTTGCGGCGTCGAAGGAGATCAAAAAGAGATTGGAGGACAGGTTTAAGACTGGGAAGAACAGGTGGTTTTTCACCAAACTTAGGTTCTGA

mRNA sequence

ATGGTGAAATTCATCAAGCCGAACAAAGCTGTTATTGTTCTCCAAGGCCGATTTGCCGGCCGGAAAGCTGTAATCGTCCGAAACTTTGATGAAGGAACCCGCGACCGGCCCTACGGCCATTGTTTGGTAGCAGGGATGAAAAAGTACCCGAGCAAGGTCATTCGCAAAGATTCAAAGAAAAAGACAGATAAAAAATCGAGAGTGAAAGCATTCATCAAGCTTGTGAATTACCAGCACATTATGCCGACGAGGTACACGCTCGACGTTGATCTCAAGGATGTGGTTAATGTGGATTGCTTACAGTCGAAAGTGTCGAAGGTTGCGGCGTCGAAGGAGATCAAAAAGAGATTGGAGGACAGGTTTAAGACTGGGAAGAACAGGTGGTTTTTCACCAAACTTAGGTTCTGA

Coding sequence (CDS)

ATGGTGAAATTCATCAAGCCGAACAAAGCTGTTATTGTTCTCCAAGGCCGATTTGCCGGCCGGAAAGCTGTAATCGTCCGAAACTTTGATGAAGGAACCCGCGACCGGCCCTACGGCCATTGTTTGGTAGCAGGGATGAAAAAGTACCCGAGCAAGGTCATTCGCAAAGATTCAAAGAAAAAGACAGATAAAAAATCGAGAGTGAAAGCATTCATCAAGCTTGTGAATTACCAGCACATTATGCCGACGAGGTACACGCTCGACGTTGATCTCAAGGATGTGGTTAATGTGGATTGCTTACAGTCGAAAGTGTCGAAGGTTGCGGCGTCGAAGGAGATCAAAAAGAGATTGGAGGACAGGTTTAAGACTGGGAAGAACAGGTGGTTTTTCACCAAACTTAGGTTCTGA

Protein sequence

MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF

Homology

[Close]

BLAST of IVF0016863 vs. ExPASy Swiss-Prot
Match: P51419 (60S ribosomal protein L27-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27C PE=2 SV=2)

HSP 1 Score: 221.5 bits (563), Expect = 5.9e-57
Identity = 108/135 (80.00%), Postives = 122/135 (90.37%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKF+K NKAVI+LQGR+AG+KAVI+++FD+G RDRPYGHCLVAG+KKYPSKVIRKDS K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVK FIKLVNYQH+MPTRYTLDVDLK+V  +D LQSK  KVAA KE K +LE+R
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of IVF0016863 vs. ExPASy Swiss-Prot
Match: Q05462 (60S ribosomal protein L27 OS=Pisum sativum OX=3888 GN=RPL27 PE=2 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.3e-56
Identity = 108/135 (80.00%), Postives = 122/135 (90.37%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKF+KPNKAVI+LQGR+AG+KAVIV+ FD+GTR++PYGHCLVAG+KK+PSKVI+KDS K
Sbjct: 1   MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVKAF+KLVNYQH+MPTRYTLDVDLKD V  D LQSK  KV A KE KK LE+R
Sbjct: 61  KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of IVF0016863 vs. ExPASy Swiss-Prot
Match: Q8LCL3 (60S ribosomal protein L27-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27B PE=2 SV=2)

HSP 1 Score: 214.5 bits (545), Expect = 7.2e-55
Identity = 105/135 (77.78%), Postives = 120/135 (88.89%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKF+K NKAVI+LQGR+AG+KAVI+++FD+GT DR YGHCLVAG+KKYPSKVIRKDS K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVK FIKLVNYQH+MPTRYTLDVDLK+V  +D L+SK  KV A KE K +LE+R
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of IVF0016863 vs. ExPASy Swiss-Prot
Match: P41101 (60S ribosomal protein L27 OS=Solanum tuberosum OX=4113 GN=RPL27 PE=2 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 9.7e-52
Identity = 106/139 (76.26%), Postives = 116/139 (83.45%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           M KF+KPNKAVI+LQG++AGRKAVIVR FDEGTRDRPYGHCLVAG+ +YP KVIRKDS K
Sbjct: 1   MEKFLKPNKAVILLQGKYAGRKAVIVRAFDEGTRDRPYGHCLVAGISRYPKKVIRKDSAK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDL----KDVVNVDCLQSKVSKVAASKEIKKR 120
           K  KKSRVKAFIKLVNY HIMPTRYTLD DL    KDVVN D LQ++  KV A +  K R
Sbjct: 61  KAGKKSRVKAFIKLVNYNHIMPTRYTLDEDLKDVVKDVVNADVLQARDKKVTA-RRTKAR 120

Query: 121 LEDRFKTGKNRWFFTKLRF 136
           L +RFKTGKNRWFFTKLRF
Sbjct: 121 LAERFKTGKNRWFFTKLRF 138

[Close]

BLAST of IVF0016863 vs. ExPASy Swiss-Prot
Match: Q9SKX8 (60S ribosomal protein L27-1 OS=Arabidopsis thaliana OX=3702 GN=RPL27A PE=2 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 3.7e-51
Identity = 97/135 (71.85%), Postives = 116/135 (85.93%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVK +KP KAVI+LQGR+ G+KAVIV++FD+GT ++ YGHCLVAG+KKYPSKVIRKDS K
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVK F K++NYQH+MPTRYTLD+DLK+VV+ D + SK  KV A KE K + E+R
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of IVF0016863 vs. ExPASy TrEMBL
Match: A0A5A7SSA5 (60S ribosomal protein L27 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003380 PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 2.6e-68
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK
Sbjct: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR
Sbjct: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of IVF0016863 vs. ExPASy TrEMBL
Match: A0A1S3CNL3 (60S ribosomal protein L27 OS=Cucumis melo OX=3656 GN=LOC103502503 PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 2.6e-68
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK
Sbjct: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR
Sbjct: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of IVF0016863 vs. ExPASy TrEMBL
Match: A0A0A0L310 (60S ribosomal protein L27 OS=Cucumis sativus OX=3659 GN=Csa_4G618420 PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.2e-67
Identity = 132/135 (97.78%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKFIKPNKAV+VLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKV+RKDSKK
Sbjct: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KTDKKSRVKAFIKL NYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR
Sbjct: 61  KTDKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of IVF0016863 vs. ExPASy TrEMBL
Match: A0A6J1FNC2 (60S ribosomal protein L27 OS=Cucurbita moschata OX=3662 GN=LOC111445816 PE=3 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.5e-66
Identity = 132/135 (97.78%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKFIKPNKAVIVLQGRFAGRKAVIVRNFD+GTRDRPYGHCLVAGMKKYPSKVIRKDS K
Sbjct: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR
Sbjct: 61  KTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of IVF0016863 vs. ExPASy TrEMBL
Match: A0A0A0K3A4 (60S ribosomal protein L27 OS=Cucumis sativus OX=3659 GN=Csa_7G209560 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 7.2e-66
Identity = 129/135 (95.56%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKFIKPNKAVIVLQGR+AGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKV+RKDSKK
Sbjct: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KTDKKSRVKAFIKL NYQHIMPTRYTLDVDLKDVVNVDCLQS+VSKV+ASKEIKKRLE+R
Sbjct: 61  KTDKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLENR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of IVF0016863 vs. NCBI nr
Match: XP_008464678.1 (PREDICTED: 60S ribosomal protein L27-3-like [Cucumis melo] >KAA0032926.1 60S ribosomal protein L27-3-like [Cucumis melo var. makuwa] >TYK28074.1 60S ribosomal protein L27-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 264 bits (675), Expect = 6.40e-89
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK
Sbjct: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR
Sbjct: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 135
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of IVF0016863 vs. NCBI nr
Match: XP_004145994.3 (60S ribosomal protein L27-3 [Cucumis sativus] >KAE8649796.1 hypothetical protein Csa_012871 [Cucumis sativus])

HSP 1 Score: 263 bits (673), Expect = 1.29e-88
Identity = 133/135 (98.52%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKFIKPNKAV+VLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKV+RKDSKK
Sbjct: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR
Sbjct: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 135
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of IVF0016863 vs. NCBI nr
Match: XP_022940098.1 (60S ribosomal protein L27-3-like [Cucurbita moschata])

HSP 1 Score: 258 bits (658), Expect = 2.51e-86
Identity = 132/135 (97.78%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKFIKPNKAVIVLQGRFAGRKAVIVRNFD+GTRDRPYGHCLVAGMKKYPSKVIRKDS K
Sbjct: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR
Sbjct: 61  KTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 135
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of IVF0016863 vs. NCBI nr
Match: XP_011658974.2 (60S ribosomal protein L27 [Cucumis sativus] >KAE8646052.1 hypothetical protein Csa_015825 [Cucumis sativus])

HSP 1 Score: 255 bits (651), Expect = 2.93e-85
Identity = 129/135 (95.56%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKFIKPNKAVIVLQGR+AGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK
Sbjct: 1   MVKFIKPNKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT+KKSRVKAFIKL NYQHIMPTRYTLDVDLKDVVNVDCLQS+VSKV+ASKEIKKRLE+R
Sbjct: 61  KTEKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSRVSKVSASKEIKKRLENR 120

Query: 121 FKTGKNRWFFTKLRF 135
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of IVF0016863 vs. NCBI nr
Match: KAG6608000.1 (60S ribosomal protein L27-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 256 bits (654), Expect = 1.37e-84
Identity = 131/135 (97.04%), Postives = 132/135 (97.78%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKFIKPNKAVIVLQGRFAGRKAVIVRNFD+GTRDRPYGHCLVAGMKKYPSKVIRKDS K
Sbjct: 78  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTK 137

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVN DCLQSKVSKVAASKEIKKRLEDR
Sbjct: 138 KTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNADCLQSKVSKVAASKEIKKRLEDR 197

Query: 121 FKTGKNRWFFTKLRF 135
           FKTGKNRWFFTKLRF
Sbjct: 198 FKTGKNRWFFTKLRF 212

[Close]

BLAST of IVF0016863 vs. TAIR 10
Match: AT4G15000.1 (Ribosomal L27e protein family )

HSP 1 Score: 221.5 bits (563), Expect = 4.2e-58
Identity = 108/135 (80.00%), Postives = 122/135 (90.37%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKF+K NKAVI+LQGR+AG+KAVI+++FD+G RDRPYGHCLVAG+KKYPSKVIRKDS K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVK FIKLVNYQH+MPTRYTLDVDLK+V  +D LQSK  KVAA KE K +LE+R
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of IVF0016863 vs. TAIR 10
Match: AT3G22230.1 (Ribosomal L27e protein family )

HSP 1 Score: 214.5 bits (545), Expect = 5.1e-56
Identity = 105/135 (77.78%), Postives = 120/135 (88.89%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKF+K NKAVI+LQGR+AG+KAVI+++FD+GT DR YGHCLVAG+KKYPSKVIRKDS K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVK FIKLVNYQH+MPTRYTLDVDLK+V  +D L+SK  KV A KE K +LE+R
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of IVF0016863 vs. TAIR 10
Match: AT2G32220.1 (Ribosomal L27e protein family )

HSP 1 Score: 202.2 bits (513), Expect = 2.6e-52
Identity = 97/135 (71.85%), Postives = 116/135 (85.93%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVK +KP KAVI+LQGR+ G+KAVIV++FD+GT ++ YGHCLVAG+KKYPSKVIRKDS K
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVK F K++NYQH+MPTRYTLD+DLK+VV+ D + SK  KV A KE K + E+R
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of IVF0016863 vs. TAIR 10
Match: AT4G15000.2 (Ribosomal L27e protein family )

HSP 1 Score: 195.7 bits (496), Expect = 2.5e-50
Identity = 96/123 (78.05%), Postives = 110/123 (89.43%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKF+K NKAVI+LQGR+AG+KAVI+++FD+G RDRPYGHCLVAG+KKYPSKVIRKDS K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120
           KT KKSRVK FIKLVNYQH+MPTRYTLDVDLK+V  +D LQSK  KVAA KE K +LE+R
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKT 124
           FKT
Sbjct: 121 FKT 123

The following BLAST results are available for this feature:

BLAST of IVF0016863 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P51419	5.9e-57	80.00	60S ribosomal protein L27-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27C PE=2 SV=2	[more]
Q05462	1.3e-56	80.00	60S ribosomal protein L27 OS=Pisum sativum OX=3888 GN=RPL27 PE=2 SV=1	[more]
Q8LCL3	7.2e-55	77.78	60S ribosomal protein L27-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27B PE=2 SV=2	[more]
P41101	9.7e-52	76.26	60S ribosomal protein L27 OS=Solanum tuberosum OX=4113 GN=RPL27 PE=2 SV=1	[more]
Q9SKX8	3.7e-51	71.85	60S ribosomal protein L27-1 OS=Arabidopsis thaliana OX=3702 GN=RPL27A PE=2 SV=1	[more]

BLAST of IVF0016863 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SSA5	2.6e-68	100.00	60S ribosomal protein L27 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CNL3	2.6e-68	100.00	60S ribosomal protein L27 OS=Cucumis melo OX=3656 GN=LOC103502503 PE=3 SV=1	[more]
A0A0A0L310	2.2e-67	97.78	60S ribosomal protein L27 OS=Cucumis sativus OX=3659 GN=Csa_4G618420 PE=3 SV=1	[more]
A0A6J1FNC2	2.5e-66	97.78	60S ribosomal protein L27 OS=Cucurbita moschata OX=3662 GN=LOC111445816 PE=3 SV=...	[more]
A0A0A0K3A4	7.2e-66	95.56	60S ribosomal protein L27 OS=Cucumis sativus OX=3659 GN=Csa_7G209560 PE=3 SV=1	[more]

BLAST of IVF0016863 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464678.1	6.40e-89	100.00	PREDICTED: 60S ribosomal protein L27-3-like [Cucumis melo] >KAA0032926.1 60S rib...	[more]
XP_004145994.3	1.29e-88	98.52	60S ribosomal protein L27-3 [Cucumis sativus] >KAE8649796.1 hypothetical protein...	[more]
XP_022940098.1	2.51e-86	97.78	60S ribosomal protein L27-3-like [Cucurbita moschata]	[more]
XP_011658974.2	2.93e-85	95.56	60S ribosomal protein L27 [Cucumis sativus] >KAE8646052.1 hypothetical protein C...	[more]
KAG6608000.1	1.37e-84	97.04	60S ribosomal protein L27-3, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of IVF0016863 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15000.1	4.2e-58	80.00	Ribosomal L27e protein family	[more]
AT3G22230.1	5.1e-56	77.78	Ribosomal L27e protein family	[more]
AT2G32220.1	2.6e-52	71.85	Ribosomal L27e protein family	[more]
AT4G15000.2	2.5e-50	78.05	Ribosomal L27e protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005824	KOW	SMART	SM00739	kow_9	coord: 4..31 e-value: 0.0033 score: 26.7
IPR001141	Ribosomal protein L27e	PFAM	PF01777	Ribosomal_L27e	coord: 52..135 e-value: 3.4E-31 score: 107.4
IPR001141	Ribosomal protein L27e	PANTHER	PTHR10497	60S RIBOSOMAL PROTEIN L27	coord: 1..135
IPR038655	Ribosomal protein L27e superfamily	GENE3D	2.30.30.770		coord: 1..135 e-value: 1.2E-59 score: 202.3
None	No IPR available	PANTHER	PTHR10497:SF17	60S RIBOSOMAL PROTEIN L27	coord: 1..135
IPR018262	Ribosomal protein L27e, conserved site	PROSITE	PS01107	RIBOSOMAL_L27E	coord: 124..135
IPR041991	Eukaryotic Ribosomal Protein L27, KOW domain	CDD	cd06090	KOW_RPL27	coord: 6..88 e-value: 6.54567E-37 score: 119.21
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 2..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0016863.1	IVF0016863.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome