IVF0016798 (gene) Melon (IVF77) v1

Overview


Name	IVF0016798
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	50S ribosomal protein L2, chloroplastic
Location	tig00000662: 67268 .. 68757 (+)
RNA-Seq Expression	IVF0016798
Synteny	IVF0016798

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTAAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATAGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTTTGAACTATTGATTTACGTAATTGGAAGTAACCAATTAGGTTTACGACGAAACCTAGAAATCGATCACTGATCCAATTTGAGTACCTCCACAGGATAGACCTCAACAGAAAACTGAAGAGTAACGGCAGCAAGTGATTGAGTTCAGTAGTTCCTCATATAAAATTATTGACTCTAGAGATATAGTAATATGGAGAAGACTAAATTGTTTCAAGCACCGACAGAACCAGAAGCGTCCCTTGTTTCAAAGAGAGGAGGACGGGTTATTCACATTTCATTTGATGGTCAGAGGCAAATTGAAAGCTAAGCAGTGGTAATTCTAAGGATTCCCGAGGGGAAAAATAGAGATGTCTCCTACGTTACCCGTAATATGTGGAAGTATCGACGTAATTTCATAGAGTCATTCGGTCTGAATGCTACATGAAGAACATAAGCCAGATGAAGGAACGGGAAGACCTAGGATGTAGAAGATCATAACATGAGTGATTCGGCAGATTTGGATTCCTATATATCCACTCATGTGGTACTTCATTGTACCATATATATAAGATCCATATGTATAGATATCATCATCTACATCCAGAAAGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTAAATAA

mRNA sequence

ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTAAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATAGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTAAATAA

Coding sequence (CDS)

ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTAAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATAGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTAAATAA

Protein sequence

MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLKSTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK

Homology

[Close]

BLAST of IVF0016798 vs. ExPASy Swiss-Prot
Match: Q4VZK5 (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 545.8 bits (1405), Expect = 2.8e-154
Identity = 274/278 (98.56%), Postives = 274/278 (98.56%), Query Frame = 0


Query: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
           MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120
           RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV
Sbjct: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120

Query: 121 PIKMGNALPLKSTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 180
           PIKMGNALPL    TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS
Sbjct: 121 PIKMGNALPL----TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 180

Query: 181 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 240
           GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR
Sbjct: 181 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 240

Query: 241 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 279
           APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK
Sbjct: 241 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 274

[Close]

BLAST of IVF0016798 vs. ExPASy Swiss-Prot
Match: Q09MB2 (50S ribosomal protein L2, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 540.4 bits (1391), Expect = 1.2e-152
Identity = 270/278 (97.12%), Postives = 272/278 (97.84%), Query Frame = 0


Query: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
           MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120
           RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV
Sbjct: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120

Query: 121 PIKMGNALPLKSTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 180
           PIKMGNALPL    TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS
Sbjct: 121 PIKMGNALPL----TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 180

Query: 181 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 240
           GEVRLISKNCSATVGQVGN G NQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR
Sbjct: 181 GEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 240

Query: 241 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 279
           APIGRK+PATPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct: 241 APIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 274

[Close]

BLAST of IVF0016798 vs. ExPASy Swiss-Prot
Match: Q0ZIX7 (50S ribosomal protein L2, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 539.7 bits (1389), Expect = 2.0e-152
Identity = 271/278 (97.48%), Postives = 271/278 (97.48%), Query Frame = 0


Query: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
           MAIHLYKTSTPSTRN AVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1   MAIHLYKTSTPSTRNRAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120
           RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV
Sbjct: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120

Query: 121 PIKMGNALPLKSTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 180
           PIKMGNALPL    TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS
Sbjct: 121 PIKMGNALPL----TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 180

Query: 181 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 240
           GEVRLISKNCSATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR
Sbjct: 181 GEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 240

Query: 241 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 279
           APIGRKKP TPWGYPALGRRSRKRNKYSDNLILRRRSK
Sbjct: 241 APIGRKKPTTPWGYPALGRRSRKRNKYSDNLILRRRSK 274

[Close]

BLAST of IVF0016798 vs. ExPASy Swiss-Prot
Match: Q2L944 (50S ribosomal protein L2, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 538.5 bits (1386), Expect = 4.5e-152
Identity = 270/278 (97.12%), Postives = 271/278 (97.48%), Query Frame = 0


Query: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
           MAIHLYKTSTP TRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITA HRGGGHKRLY
Sbjct: 1   MAIHLYKTSTPGTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITARHRGGGHKRLY 60

Query: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120
           RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV
Sbjct: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120

Query: 121 PIKMGNALPLKSTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 180
           PIKMGNALPL    TDMPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPS
Sbjct: 121 PIKMGNALPL----TDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPS 180

Query: 181 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 240
           GEVRLISKNCSATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR
Sbjct: 181 GEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 240

Query: 241 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 279
           APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK
Sbjct: 241 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 274

[Close]

BLAST of IVF0016798 vs. ExPASy Swiss-Prot
Match: B1A976 (50S ribosomal protein L2, chloroplastic OS=Carica papaya OX=3649 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 538.1 bits (1385), Expect = 5.8e-152
Identity = 271/278 (97.48%), Postives = 271/278 (97.48%), Query Frame = 0


Query: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
           MAIHLYKTSTPSTRN AVDSQVKSNPRNNLIYGQHRCGKGRNARGIITA HRGGGHKRLY
Sbjct: 1   MAIHLYKTSTPSTRNRAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITARHRGGGHKRLY 60

Query: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120
           RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV
Sbjct: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120

Query: 121 PIKMGNALPLKSTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 180
           PIKMGNALPL    TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS
Sbjct: 121 PIKMGNALPL----TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 180

Query: 181 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 240
           GEVRLISKNCSATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR
Sbjct: 181 GEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 240

Query: 241 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 279
           APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK
Sbjct: 241 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 274

[Close]

BLAST of IVF0016798 vs. ExPASy TrEMBL
Match: A0A513X1K1 (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 558.5 bits (1438), Expect = 1.5e-155
Identity = 278/278 (100.00%), Postives = 278/278 (100.00%), Query Frame = 0


Query: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
           MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120
           RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV
Sbjct: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120

Query: 121 PIKMGNALPLKSTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 180
           PIKMGNALPLKSTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS
Sbjct: 121 PIKMGNALPLKSTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 180

Query: 181 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 240
           GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR
Sbjct: 181 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 240

Query: 241 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 279
           APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK
Sbjct: 241 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 278

[Close]

BLAST of IVF0016798 vs. ExPASy TrEMBL
Match: A0A249RZD6 (50S ribosomal protein L2, chloroplastic OS=Cucumis melo var. cantalupensis OX=3658 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 550.1 bits (1416), Expect = 5.5e-153
Identity = 277/286 (96.85%), Postives = 278/286 (97.20%), Query Frame = 0


Query: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
           MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120
           RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV
Sbjct: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120

Query: 121 PIKMGNALPLK--------STSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGK 180
           PIKMGNALPL+        STSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGK
Sbjct: 121 PIKMGNALPLRVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGK 180

Query: 181 SATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDH 240
           SATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDH
Sbjct: 181 SATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDH 240

Query: 241 PHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 279
           PHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK
Sbjct: 241 PHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 286

[Close]

BLAST of IVF0016798 vs. ExPASy TrEMBL
Match: A0A286NG40 (50S ribosomal protein L2, chloroplastic OS=Cucumis melo var. flexuosus OX=1120798 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 550.1 bits (1416), Expect = 5.5e-153
Identity = 277/286 (96.85%), Postives = 278/286 (97.20%), Query Frame = 0


Query: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
           MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120
           RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV
Sbjct: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120

Query: 121 PIKMGNALPLK--------STSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGK 180
           PIKMGNALPL+        STSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGK
Sbjct: 121 PIKMGNALPLRVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGK 180

Query: 181 SATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDH 240
           SATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDH
Sbjct: 181 SATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDH 240

Query: 241 PHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 279
           PHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK
Sbjct: 241 PHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 286

[Close]

BLAST of IVF0016798 vs. ExPASy TrEMBL
Match: A0A249RY56 (50S ribosomal protein L2, chloroplastic OS=Cucumis melo subsp. agrestis OX=217619 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 550.1 bits (1416), Expect = 5.5e-153
Identity = 277/286 (96.85%), Postives = 278/286 (97.20%), Query Frame = 0


Query: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
           MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120
           RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV
Sbjct: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120

Query: 121 PIKMGNALPLK--------STSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGK 180
           PIKMGNALPL+        STSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGK
Sbjct: 121 PIKMGNALPLRVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGK 180

Query: 181 SATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDH 240
           SATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDH
Sbjct: 181 SATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDH 240

Query: 241 PHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 279
           PHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK
Sbjct: 241 PHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 286

[Close]

BLAST of IVF0016798 vs. ExPASy TrEMBL
Match: A0A286SB86 (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus var. hardwickii OX=319220 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 550.1 bits (1416), Expect = 5.5e-153
Identity = 277/286 (96.85%), Postives = 278/286 (97.20%), Query Frame = 0


Query: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
           MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120
           RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV
Sbjct: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120

Query: 121 PIKMGNALPLK--------STSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGK 180
           PIKMGNALPL+        STSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGK
Sbjct: 121 PIKMGNALPLRVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGK 180

Query: 181 SATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDH 240
           SATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDH
Sbjct: 181 SATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDH 240

Query: 241 PHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 279
           PHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK
Sbjct: 241 PHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 286

[Close]

BLAST of IVF0016798 vs. NCBI nr
Match: QDH07784.1 (ribosomal protein L2 [Cucumis sativus] >QDH07805.1 ribosomal protein L2 [Cucumis sativus])

HSP 1 Score: 555 bits (1430), Expect = 2.70e-199
Identity = 278/278 (100.00%), Postives = 278/278 (100.00%), Query Frame = 0


Query: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
           MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120
           RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV
Sbjct: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120

Query: 121 PIKMGNALPLKSTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 180
           PIKMGNALPLKSTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS
Sbjct: 121 PIKMGNALPLKSTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 180

Query: 181 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 240
           GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR
Sbjct: 181 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 240

Query: 241 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 278
           APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK
Sbjct: 241 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 278

[Close]

BLAST of IVF0016798 vs. NCBI nr
Match: QTC32975.1 (ribosomal protein L2 [Hibiscus cannabinus])

HSP 1 Score: 548 bits (1411), Expect = 2.13e-196
Identity = 274/278 (98.56%), Postives = 275/278 (98.92%), Query Frame = 0


Query: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
           MAIHLYKTSTP TRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITA HRGGGHKRLY
Sbjct: 1   MAIHLYKTSTPGTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITARHRGGGHKRLY 60

Query: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120
           RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV
Sbjct: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120

Query: 121 PIKMGNALPLKSTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 180
           PIKMGNALPLKSTSTDMPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPS
Sbjct: 121 PIKMGNALPLKSTSTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPS 180

Query: 181 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 240
           GEVRLISKNCSATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR
Sbjct: 181 GEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 240

Query: 241 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 278
           APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK
Sbjct: 241 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 278

[Close]

BLAST of IVF0016798 vs. NCBI nr
Match: YP_009945397.1 (ribosomal protein L2 [Sechium edule] >YP_009945456.1 ribosomal protein L2 [Sechium edule] >QOE55927.1 ribosomal protein L2 [Sechium edule] >QOE55986.1 ribosomal protein L2 [Sechium edule])

HSP 1 Score: 547 bits (1410), Expect = 4.21e-196
Identity = 278/287 (96.86%), Postives = 278/287 (96.86%), Query Frame = 0


Query: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
           MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120
           RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV
Sbjct: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120

Query: 121 PIKMGNALPLK---------STSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEG 180
           PIKMGNALPLK         STSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEG
Sbjct: 121 PIKMGNALPLKGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEG 180

Query: 181 KSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVD 240
           KSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVD
Sbjct: 181 KSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVD 240

Query: 241 HPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 278
           HPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK
Sbjct: 241 HPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 287

[Close]

BLAST of IVF0016798 vs. NCBI nr
Match: YP_009420859.1 (ribosomal protein L2 [Citrullus colocynthis] >YP_009431621.1 ribosomal protein L2 [Citrullus amarus] >YP_009456211.1 ribosomal protein L2 [Lagenaria siceraria] >YP_009674455.1 ribosomal protein L2 [Siraitia grosvenorii] >ASY96385.1 ribosomal protein L2 [Cucumis melo subsp. agrestis] >ASY96645.1 ribosomal protein L2 [Cucumis melo var. conomon] >ASY96733.1 ribosomal protein L2 [Cucumis melo var. makuwa] >ASY96820.1 ribosomal protein L2 [Cucumis melo var. momordica] >ASY96907.1 ribosomal protein L2 [Cucumis melo var. dudaim] >ASY96994.1 ribosomal protein L2 [Cucumis melo var. cantalupo] >ASY97168.1 ribosomal protein L2 [Cucumis melo var. inodorus] >ASY97342.1 ribosomal protein L2 [Cucumis melo var. flexuosus] >ASY97516.1 ribosomal protein L2 [Cucumis sativus var. hardwickii] >QCY72884.1 ribosomal protein L2 [Cucumis hystrix] >QJF46450.1 ribosomal protein L2 [Cucumis melo])

HSP 1 Score: 546 bits (1408), Expect = 8.19e-196
Identity = 277/286 (96.85%), Postives = 278/286 (97.20%), Query Frame = 0


Query: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
           MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120
           RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV
Sbjct: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120

Query: 121 PIKMGNALPLK--------STSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGK 180
           PIKMGNALPL+        STSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGK
Sbjct: 121 PIKMGNALPLRVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGK 180

Query: 181 SATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDH 240
           SATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDH
Sbjct: 181 SATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDH 240

Query: 241 PHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 278
           PHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK
Sbjct: 241 PHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 286

[Close]

BLAST of IVF0016798 vs. NCBI nr
Match: YP_009326031.1 (ribosomal protein L2 [Citrullus lanatus] >YP_009348073.1 ribosomal protein L2 [Citrullus mucosospermus] >YP_009420836.1 ribosomal protein L2 [Citrullus colocynthis] >YP_009431598.1 ribosomal protein L2 [Citrullus amarus] >YP_009431684.1 ribosomal protein L2 [Citrullus rehmii] >YP_009456187.1 ribosomal protein L2 [Lagenaria siceraria] >YP_009674432.1 ribosomal protein L2 [Siraitia grosvenorii] >YP_009738243.1 ribosomal protein L2 [Siraitia siamensis] >YP_009738268.1 ribosomal protein L2 [Siraitia siamensis] >APW82504.1 ribosomal protein L2 [Citrullus lanatus subsp. vulgaris] >ASY96328.1 ribosomal protein L2 [Cucumis melo subsp. agrestis] >ASY96589.1 ribosomal protein L2 [Cucumis melo var. conomon] >ASY96676.1 ribosomal protein L2 [Cucumis melo var. makuwa] >ASY96763.1 ribosomal protein L2 [Cucumis melo var. momordica] >ASY96850.1 ribosomal protein L2 [Cucumis melo var. dudaim] >ASY96937.1 ribosomal protein L2 [Cucumis melo var. cantalupo] >ASY97111.1 ribosomal protein L2 [Cucumis melo var. inodorus] >ASY97285.1 ribosomal protein L2 [Cucumis melo var. flexuosus] >ASY97458.1 ribosomal protein L2 [Cucumis sativus var. hardwickii] >QJF46426.1 ribosomal protein L2 [Cucumis melo] >QNM38572.1 ribosomal protein L2 [Lagenaria siceraria var. microcarpa])

HSP 1 Score: 546 bits (1406), Expect = 1.71e-195
Identity = 277/287 (96.52%), Postives = 278/287 (96.86%), Query Frame = 0


Query: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
           MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120
           RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV
Sbjct: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120

Query: 121 PIKMGNALPL---------KSTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEG 180
           PIKMGNALPL         +STSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEG
Sbjct: 121 PIKMGNALPLSGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEG 180

Query: 181 KSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVD 240
           KSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVD
Sbjct: 181 KSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVD 240

Query: 241 HPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 278
           HPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK
Sbjct: 241 HPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 287

[Close]

BLAST of IVF0016798 vs. TAIR 10
Match: ATCG00830.1 (ribosomal protein L2 )

HSP 1 Score: 523.5 bits (1347), Expect = 1.1e-148
Identity = 263/278 (94.60%), Postives = 266/278 (95.68%), Query Frame = 0


Query: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
           MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLI GQH CGKGRNARGIITA HRGGGHKRLY
Sbjct: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLICGQHHCGKGRNARGIITARHRGGGHKRLY 60

Query: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120
           RKIDFRRN KDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV
Sbjct: 61  RKIDFRRNAKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120

Query: 121 PIKMGNALPLKSTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 180
           PIKMGNALPL    TDMPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPS
Sbjct: 121 PIKMGNALPL----TDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPS 180

Query: 181 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 240
           GEVRLISKNCSATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR
Sbjct: 181 GEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 240

Query: 241 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 279
           APIGRKKP TPWGYPALGRR+RKR KYS+ LILRRRSK
Sbjct: 241 APIGRKKPVTPWGYPALGRRTRKRKKYSETLILRRRSK 274

[Close]

BLAST of IVF0016798 vs. TAIR 10
Match: ATCG01310.1 (ribosomal protein L2 )

HSP 1 Score: 523.5 bits (1347), Expect = 1.1e-148
Identity = 263/278 (94.60%), Postives = 266/278 (95.68%), Query Frame = 0


Query: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
           MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLI GQH CGKGRNARGIITA HRGGGHKRLY
Sbjct: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLICGQHHCGKGRNARGIITARHRGGGHKRLY 60

Query: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120
           RKIDFRRN KDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV
Sbjct: 61  RKIDFRRNAKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120

Query: 121 PIKMGNALPLKSTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 180
           PIKMGNALPL    TDMPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPS
Sbjct: 121 PIKMGNALPL----TDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPS 180

Query: 181 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 240
           GEVRLISKNCSATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR
Sbjct: 181 GEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 240

Query: 241 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 279
           APIGRKKP TPWGYPALGRR+RKR KYS+ LILRRRSK
Sbjct: 241 APIGRKKPVTPWGYPALGRRTRKRKKYSETLILRRRSK 274

[Close]

BLAST of IVF0016798 vs. TAIR 10
Match: AT2G44065.1 (Ribosomal protein L2 family )

HSP 1 Score: 116.3 bits (290), Expect = 3.9e-26
Identity = 64/139 (46.04%), Postives = 84/139 (60.43%), Query Frame = 0


Query: 124 MGNALPLKSTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL-KLPSGE 183
           +G+++PL      M +GT IHNIE+  G+G ++ RAAG  AK++ +  K   L KLPSG+
Sbjct: 59  IGSSMPLGM----MRIGTIIHNIEMNPGQGAKMVRAAGTNAKILKEPAKGKCLIKLPSGD 118

Query: 184 VRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAP 243
            + I+  C AT+G V N     K L +AG   WLG RP VRGV MNP DHPHGGGEG++ 
Sbjct: 119 TKWINAKCRATIGTVSNPSHGTKKLYKAGQSRWLGIRPKVRGVAMNPCDHPHGGGEGKSK 178

Query: 244 IGRKKPAT---PWGYPALG 259
               +  T   PWG P  G
Sbjct: 179 SSGSRGRTSVSPWGKPCKG 193

[Close]

BLAST of IVF0016798 vs. TAIR 10
Match: AT2G44065.2 (Ribosomal protein L2 family )

HSP 1 Score: 116.3 bits (290), Expect = 3.9e-26
Identity = 64/139 (46.04%), Postives = 84/139 (60.43%), Query Frame = 0


Query: 124 MGNALPLKSTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL-KLPSGE 183
           +G+++PL      M +GT IHNIE+  G+G ++ RAAG  AK++ +  K   L KLPSG+
Sbjct: 59  IGSSMPLGM----MRIGTIIHNIEMNPGQGAKMVRAAGTNAKILKEPAKGKCLIKLPSGD 118

Query: 184 VRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAP 243
            + I+  C AT+G V N     K L +AG   WLG RP VRGV MNP DHPHGGGEG++ 
Sbjct: 119 TKWINAKCRATIGTVSNPSHGTKKLYKAGQSRWLGIRPKVRGVAMNPCDHPHGGGEGKSK 178

Query: 244 IGRKKPAT---PWGYPALG 259
               +  T   PWG P  G
Sbjct: 179 SSGSRGRTSVSPWGKPCKG 193

[Close]

BLAST of IVF0016798 vs. TAIR 10
Match: AT3G51190.1 (Ribosomal protein L2 family )

HSP 1 Score: 104.4 bits (259), Expect = 1.5e-22
Identity = 81/236 (34.32%), Postives = 113/236 (47.88%), Query Frame = 0


Query: 51  HRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGD-----GEKRYILHP 110
           HR G  K  +R +D+      + G +  I +DP R A +  + +        +K   +  
Sbjct: 23  HRKGPAK--FRSLDYGERNGYLKGLVTEIIHDPGRGAPLARVAFRHPFRYMKQKELFVAA 82

Query: 111 RGAIIGDTIVSGTEVPIKMGNALPLKSTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAK 170
            G   G  +  G +  + +GN LPL S    +P G  I N+E+ +G  G LARA+G  A 
Sbjct: 83  EGMYTGQYLYCGKKANLMVGNVLPLGS----IPEGAVICNVELHVGDRGALARASGDYAI 142

Query: 171 LIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGS---------KC 230
           +IA   +S T  +KLPSG  +++   C A +GQV   G  +K L +AG+          C
Sbjct: 143 VIAHNPESNTTRVKLPSGSKKILPSACRAMIGQVAGGGRTEKPLLKAGNAYHKYKAKRNC 202

Query: 231 WLGKRPVVRGVVMNPVDHPHGGGE----GRAPIGR--KKPATPWGYPALGRRSRKR 265
           W    PVVRGV MNPV+HPHGGG     G A   R  K      G  A  R  R+R
Sbjct: 203 W----PVVRGVAMNPVEHPHGGGNHQHIGHASTVRRDKSAGAKVGQIAARRTGRRR 248

The following BLAST results are available for this feature:

BLAST of IVF0016798 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZK5	2.8e-154	98.56	50S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=...	[more]
Q09MB2	1.2e-152	97.12	50S ribosomal protein L2, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl2-A PE=...	[more]
Q0ZIX7	2.0e-152	97.48	50S ribosomal protein L2, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl2-A PE=...	[more]
Q2L944	4.5e-152	97.12	50S ribosomal protein L2, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rpl2-A ...	[more]
B1A976	5.8e-152	97.48	50S ribosomal protein L2, chloroplastic OS=Carica papaya OX=3649 GN=rpl2-A PE=3 ...	[more]

BLAST of IVF0016798 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A513X1K1	1.5e-155	100.00	50S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2 PE=3 ...	[more]
A0A249RZD6	5.5e-153	96.85	50S ribosomal protein L2, chloroplastic OS=Cucumis melo var. cantalupensis OX=36...	[more]
A0A286NG40	5.5e-153	96.85	50S ribosomal protein L2, chloroplastic OS=Cucumis melo var. flexuosus OX=112079...	[more]
A0A249RY56	5.5e-153	96.85	50S ribosomal protein L2, chloroplastic OS=Cucumis melo subsp. agrestis OX=21761...	[more]
A0A286SB86	5.5e-153	96.85	50S ribosomal protein L2, chloroplastic OS=Cucumis sativus var. hardwickii OX=31...	[more]

BLAST of IVF0016798 vs. NCBI nr


Match Name	E-value	Identity	Description
QDH07784.1	2.70e-199	100.00	ribosomal protein L2 [Cucumis sativus] >QDH07805.1 ribosomal protein L2 [Cucumis...	[more]
QTC32975.1	2.13e-196	98.56	ribosomal protein L2 [Hibiscus cannabinus]	[more]
YP_009945397.1	4.21e-196	96.86	ribosomal protein L2 [Sechium edule] >YP_009945456.1 ribosomal protein L2 [Sechi...	[more]
YP_009420859.1	8.19e-196	96.85	ribosomal protein L2 [Citrullus colocynthis] >YP_009431621.1 ribosomal protein L...	[more]
YP_009326031.1	1.71e-195	96.52	ribosomal protein L2 [Citrullus lanatus] >YP_009348073.1 ribosomal protein L2 [C...	[more]

BLAST of IVF0016798 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00830.1	1.1e-148	94.60	ribosomal protein L2	[more]
ATCG01310.1	1.1e-148	94.60	ribosomal protein L2	[more]
AT2G44065.1	3.9e-26	46.04	Ribosomal protein L2 family	[more]
AT2G44065.2	3.9e-26	46.04	Ribosomal protein L2 family	[more]
AT3G51190.1	1.5e-22	34.32	Ribosomal protein L2 family	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022669	Ribosomal protein L2, C-terminal	SMART	SM01382	Ribosomal_L2_C_2	coord: 122..255 e-value: 6.6E-77 score: 271.5
IPR022669	Ribosomal protein L2, C-terminal	PFAM	PF03947	Ribosomal_L2_C	coord: 123..253 e-value: 9.2E-51 score: 171.2
IPR002171	Ribosomal protein L2	SMART	SM01383	Ribosomal_L2_2	coord: 40..116 e-value: 1.6E-35 score: 134.0
IPR002171	Ribosomal protein L2	PIRSF	PIRSF002158	RPL2p_RPL2a_RPL8e_RPL2o	coord: 13..278 e-value: 7.6E-83 score: 275.2
IPR002171	Ribosomal protein L2	PANTHER	PTHR13691	RIBOSOMAL PROTEIN L2	coord: 3..276
IPR014726	Ribosomal protein L2, domain 3	GENE3D	4.10.950.10	Ribosomal protein L2, domain 3	coord: 199..277 e-value: 2.2E-34 score: 119.4
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 116..198 e-value: 5.1E-36 score: 124.5
None	No IPR available	GENE3D	2.40.50.140		coord: 1..112 e-value: 2.0E-39 score: 136.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 262..278
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 228..278
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR13691:SF51	50S RIBOSOMAL PROTEIN L2, CHLOROPLASTIC	coord: 3..276
IPR022666	Ribosomal Proteins L2, RNA binding domain	PFAM	PF00181	Ribosomal_L2	coord: 40..116 e-value: 1.2E-29 score: 102.0
IPR005880	Ribosomal protein L2, bacterial/organellar-type	TIGRFAM	TIGR01171	TIGR01171	coord: 3..277 e-value: 1.3E-111 score: 370.4
IPR005880	Ribosomal protein L2, bacterial/organellar-type	HAMAP	MF_01320_B	Ribosomal_L2_B	coord: 1..277 score: 43.922295
IPR022671	Ribosomal protein L2, conserved site	PROSITE	PS00467	RIBOSOMAL_L2	coord: 220..231
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 2..123
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 125..275

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0016798.1	IVF0016798.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003723	RNA binding