IVF0015944 (gene) Melon (IVF77) v1

Overview
NameIVF0015944
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr04: 15606748 .. 15607031 (-)
RNA-Seq ExpressionIVF0015944
SyntenyIVF0015944
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGAAGGCAGAGGAGACATGCCTCGTCGACTTGATCATCATGGGAGGTTGGCAGTCAACAATGGGACTTTTCTATCGGGTTATTTGTCATAGTTGGTGAGAATGTTGGGAGAGAGAATGCCAGGATACAGATTGACATCCACCACTGTGATCGAAAGCATAATCAAATTACTGAAATAAACATTTCAGGCCATTGCAAAATGAGGGGACCGACGTGCAGTGACTTTGGATGGAACGATGAGAAGAAGTGCTTGATTACGGAGGACATGTTTGACAATTGA

mRNA sequence

ATGGACGAAGGCAGAGGAGACATGCCTCGTCGACTTGATCATCATGGGAGGTTGGCAAATGTTGGGAGAGAGAATGCCAGGATACAGATTGACATCCACCACTGTGATCGAAAGCATAATCAAATTACTGAAATAAACATTTCAGGCCATTGCAAAATGAGGGGACCGACGTGCAGTGACTTTGGATGGAACGATGAGAAGAAGTGCTTGATTACGGAGGACATGTTTGACAATTGA

Coding sequence (CDS)

ATGGACGAAGGCAGAGGAGACATGCCTCGTCGACTTGATCATCATGGGAGGTTGGCAAATGTTGGGAGAGAGAATGCCAGGATACAGATTGACATCCACCACTGTGATCGAAAGCATAATCAAATTACTGAAATAAACATTTCAGGCCATTGCAAAATGAGGGGACCGACGTGCAGTGACTTTGGATGGAACGATGAGAAGAAGTGCTTGATTACGGAGGACATGTTTGACAATTGA

Protein sequence

MDEGRGDMPRRLDHHGRLANVGRENARIQIDIHHCDRKHNQITEINISGHCKMRGPTCSDFGWNDEKKCLITEDMFDN
Homology
BLAST of IVF0015944 vs. ExPASy TrEMBL
Match: A0A5D3C0B1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001770 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.5e-20
Identity = 57/88 (64.77%), Postives = 59/88 (67.05%), Query Frame = 0

Query: 1  MDEGRGDMPRRLDHHGRLA----------------NVGRENARIQIDIHHCDRKHNQITE 60
          MDEGRGDMPRRLDHHGRLA                NVGRENARIQIDIHHCDRKHNQITE
Sbjct: 1  MDEGRGDMPRRLDHHGRLAVKQWDFSIGLFVIVGENVGRENARIQIDIHHCDRKHNQITE 60

Query: 61 INISGHCK--------MRGPTCSDFGWN 65
          INISGHCK        +R  T +D G N
Sbjct: 61 INISGHCKNEGTDAIGVRAETFTDIGSN 88

BLAST of IVF0015944 vs. ExPASy TrEMBL
Match: A0A5D3D568 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold481G00390 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.3e-05
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 0

Query: 37 RKHNQITEINISGHCKMRGPTCSDFGWNDEKKCLIT-EDMFDN 79
          +K N+I E ++SGHC+  G T SDFGWNDE KC+I  +D+FD+
Sbjct: 11 QKLNKIVEEDVSGHCRDEGSTSSDFGWNDEVKCIIVKKDLFDH 53

BLAST of IVF0015944 vs. NCBI nr
Match: KAA0061118.1 (hypothetical protein E6C27_scaffold348G00340 [Cucumis melo var. makuwa] >TYK03789.1 hypothetical protein E5676_scaffold863G001770 [Cucumis melo var. makuwa])

HSP 1 Score: 106 bits (264), Expect = 6.80e-27
Identity = 57/88 (64.77%), Postives = 59/88 (67.05%), Query Frame = 0

Query: 1  MDEGRGDMPRRLDHHGRLA----------------NVGRENARIQIDIHHCDRKHNQITE 60
          MDEGRGDMPRRLDHHGRLA                NVGRENARIQIDIHHCDRKHNQITE
Sbjct: 1  MDEGRGDMPRRLDHHGRLAVKQWDFSIGLFVIVGENVGRENARIQIDIHHCDRKHNQITE 60

Query: 61 INISGHCK--------MRGPTCSDFGWN 64
          INISGHCK        +R  T +D G N
Sbjct: 61 INISGHCKNEGTDAIGVRAETFTDIGSN 88

BLAST of IVF0015944 vs. NCBI nr
Match: TYK18691.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 1.92e-08
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 0

Query: 37 RKHNQITEINISGHCKMRGPTCSDFGWNDEKKCLITE-DMFDN 78
          +K N+I E ++SGHC+  G T SDFGWNDE KC+I + D+FD+
Sbjct: 11 QKLNKIVEEDVSGHCRDEGSTSSDFGWNDEVKCIIVKKDLFDH 53

BLAST of IVF0015944 vs. NCBI nr
Match: KAA0059919.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24866.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 52.0 bits (123), Expect = 8.22e-06
Identity = 20/28 (71.43%), Postives = 26/28 (92.86%), Query Frame = 0

Query: 52 KMRGPTCSDFGWNDEKKCLITE-DMFDN 78
          ++RGPTCSDFGWNDE+KC+I E ++FDN
Sbjct: 54 EIRGPTCSDFGWNDEEKCIIAEKELFDN 81

BLAST of IVF0015944 vs. NCBI nr
Match: KAA0043029.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 50.8 bits (120), Expect = 2.53e-05
Identity = 20/28 (71.43%), Postives = 25/28 (89.29%), Query Frame = 0

Query: 52 KMRGPTCSDFGWNDEKKCLITE-DMFDN 78
          +MRGPTCS FGWNDE+KC+I E ++FDN
Sbjct: 33 EMRGPTCSGFGWNDEEKCIIVEKELFDN 60

BLAST of IVF0015944 vs. NCBI nr
Match: KAA0047166.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK01162.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 50.8 bits (120), Expect = 3.21e-05
Identity = 20/28 (71.43%), Postives = 25/28 (89.29%), Query Frame = 0

Query: 52 KMRGPTCSDFGWNDEKKCLITE-DMFDN 78
          +MRGPTCS FGWNDE+KC+I E ++FDN
Sbjct: 33 EMRGPTCSGFGWNDEEKCIIAEKELFDN 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C0B14.5e-2064.77Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3D5685.3e-0555.81Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0061118.16.80e-2764.77hypothetical protein E6C27_scaffold348G00340 [Cucumis melo var. makuwa] >TYK0378... [more]
TYK18691.11.92e-0855.81retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0059919.18.22e-0671.43retrotransposon protein [Cucumis melo var. makuwa] >TYK24866.1 retrotransposon p... [more]
KAA0043029.12.53e-0571.43retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0047166.13.21e-0571.43retrotransposon protein [Cucumis melo var. makuwa] >TYK01162.1 retrotransposon p... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0015944.2IVF0015944.2mRNA