IVF0015787 (gene) Melon (IVF77) v1

Overview


Name	IVF0015787
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag-pol polyprotein
Location	chr02: 16355458 .. 16355709 (-)
RNA-Seq Expression	IVF0015787
Synteny	IVF0015787

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAAGATGAAACGATCACAGAATTTAATGTCAGTGTTTTGGATTTGGCGAATGAATCTTTTGCTCTTAGGGAAAGGCTTTTCGATACAAAATTGGTGAGGAAAGTTTTGAGATTCCTTCTGTCTTGGTTCAACATGAAAGTTACTACTATTGAGGAAGCTAACGACACCGCCACCATGAGACTTGAGGAGTTATTCAGGTCTTTAAGAACATTTGAACTATCATTTAATGATAATGTACAAAAGTAG

mRNA sequence

ATGGCTGAAGATGAAACGATCACAGAATTTAATGTCAGTGTTTTGGATTTGGCGAATGAATCTTTTGCTCTTAGGGAAAGGCTTTTCGATACAAAATTGGTGAGGAAAGTTTTGAGATTCCTTCTGTCTTGGTTCAACATGAAAGTTACTACTATTGAGGAAGCTAACGACACCGCCACCATGAGACTTGAGGAGTTATTCAGGTCTTTAAGAACATTTGAACTATCATTTAATGATAATGTACAAAAGTAG

Coding sequence (CDS)

ATGGCTGAAGATGAAACGATCACAGAATTTAATGTCAGTGTTTTGGATTTGGCGAATGAATCTTTTGCTCTTAGGGAAAGGCTTTTCGATACAAAATTGGTGAGGAAAGTTTTGAGATTCCTTCTGTCTTGGTTCAACATGAAAGTTACTACTATTGAGGAAGCTAACGACACCGCCACCATGAGACTTGAGGAGTTATTCAGGTCTTTAAGAACATTTGAACTATCATTTAATGATAATGTACAAAAGTAG

Protein sequence

MAEDETITEFNVSVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTATMRLEELFRSLRTFELSFNDNVQK

Homology

[Close]

BLAST of IVF0015787 vs. ExPASy TrEMBL
Match: A0A5A7TZ67 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G00500 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 4.0e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MAEDETITEFNVSVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTAT 60
          MAEDETITEFNVSVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTAT
Sbjct: 1  MAEDETITEFNVSVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTAT 60

Query: 61 MRLEELF 68
          MRLEELF
Sbjct: 61 MRLEELF 67

[Close]

BLAST of IVF0015787 vs. ExPASy TrEMBL
Match: A0A5D3BLP1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00270 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.8e-22
Identity = 61/84 (72.62%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 1   MAEDETITEFNV-SVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTA 60
           + EDE +TEFNV  V+DLANESFALRE+LF+TKLV+KVLR L S FN+KVT IEEAND  
Sbjct: 139 IVEDEIVTEFNVLCVMDLANESFALREKLFNTKLVKKVLRTLTSRFNIKVTAIEEANDIT 198

Query: 61  TMRLEELFRSLRTFELSFNDNVQK 84
           TM+L+ELF SLRTFELSF+DN  K
Sbjct: 199 TMKLDELFGSLRTFELSFDDNATK 222

[Close]

BLAST of IVF0015787 vs. ExPASy TrEMBL
Match: A0A5D3BW07 (Receptor-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G001070 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.7e-21
Identity = 58/80 (72.50%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 1   MAEDETITEFNVSVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTAT 60
           MAEDETI EFNV VLDLANESFAL E+  DTK+VR+VLR L   FNMK TTI+EAND  T
Sbjct: 99  MAEDETIVEFNVRVLDLANESFALGEKFTDTKMVREVLRSLRFRFNMKATTIKEANDITT 158

Query: 61  MRLEELFRSLRTFELSFNDN 81
           M+L+ELF SL+TFELS  DN
Sbjct: 159 MKLDELFGSLKTFELSLEDN 178

[Close]

BLAST of IVF0015787 vs. ExPASy TrEMBL
Match: A0A5A7T1K8 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G003220 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.3e-20
Identity = 57/80 (71.25%), Postives = 68/80 (85.00%), Query Frame = 0


Query: 1   MAEDETITEFNVSVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTAT 60
           M +DETIT+FNV VLD+ANES AL E++ D+KLVRKVLR LLS FNMKVTTIEEAND +T
Sbjct: 58  MTDDETITKFNVRVLDIANESNALGEKMSDSKLVRKVLRSLLSKFNMKVTTIEEANDLST 117

Query: 61  MRLEELFRSLRTFELSFNDN 81
           M+L+ELF SLRTFEL   ++
Sbjct: 118 MKLDELFGSLRTFELHLGED 137

[Close]

BLAST of IVF0015787 vs. ExPASy TrEMBL
Match: A0A1S4E3G5 (uncharacterized protein LOC107991877 OS=Cucumis melo OX=3656 GN=LOC107991877 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.3e-20
Identity = 57/80 (71.25%), Postives = 68/80 (85.00%), Query Frame = 0


Query: 1  MAEDETITEFNVSVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTAT 60
          M +DETIT+FNV VLD+ANES AL E++ D+KLVRKVLR LLS FNMKVTTIEEAND +T
Sbjct: 1  MTDDETITKFNVRVLDIANESNALGEKMSDSKLVRKVLRSLLSKFNMKVTTIEEANDLST 60

Query: 61 MRLEELFRSLRTFELSFNDN 81
          M+L+ELF SLRTFEL   ++
Sbjct: 61 MKLDELFGSLRTFELHLGED 80

[Close]

BLAST of IVF0015787 vs. NCBI nr
Match: KAA0046529.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK28729.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 130 bits (326), Expect = 1.62e-34
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MAEDETITEFNVSVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTAT 60
          MAEDETITEFNVSVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTAT
Sbjct: 1  MAEDETITEFNVSVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTAT 60

Query: 61 MRLEELF 67
          MRLEELF
Sbjct: 61 MRLEELF 67

[Close]

BLAST of IVF0015787 vs. NCBI nr
Match: TYK00077.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 115 bits (287), Expect = 1.59e-28
Identity = 61/84 (72.62%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 1   MAEDETITEFNV-SVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTA 60
           + EDE +TEFNV  V+DLANESFALRE+LF+TKLV+KVLR L S FN+KVT IEEAND  
Sbjct: 139 IVEDEIVTEFNVLCVMDLANESFALREKLFNTKLVKKVLRTLTSRFNIKVTAIEEANDIT 198

Query: 61  TMRLEELFRSLRTFELSFNDNVQK 83
           TM+L+ELF SLRTFELSF+DN  K
Sbjct: 199 TMKLDELFGSLRTFELSFDDNATK 222

[Close]

BLAST of IVF0015787 vs. NCBI nr
Match: TYK19518.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (267), Expect = 4.61e-28
Identity = 58/83 (69.88%), Postives = 64/83 (77.11%), Query Frame = 0


Query: 1  MAEDETITEFNVSVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTAT 60
          M EDET+ EFNV VLDLANESF L E+L DTKLVRKVLR L    NMKVT IE+AN+   
Sbjct: 1  MVEDETLAEFNVHVLDLANESFTLGEKLTDTKLVRKVLRSLPPRLNMKVTAIEKANNIIV 60

Query: 61 MRLEELFRSLRTFELSFNDNVQK 83
          MRL+ELFRSLRTF+LS  DN  K
Sbjct: 61 MRLDELFRSLRTFKLSVEDNSSK 83

[Close]

BLAST of IVF0015787 vs. NCBI nr
Match: KAA0046866.1 (Receptor-like protein 12 [Cucumis melo var. makuwa] >TYK03280.1 Receptor-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (274), Expect = 2.13e-27
Identity = 58/80 (72.50%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 1   MAEDETITEFNVSVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTAT 60
           MAEDETI EFNV VLDLANESFAL E+  DTK+VR+VLR L   FNMK TTI+EAND  T
Sbjct: 99  MAEDETIVEFNVRVLDLANESFALGEKFTDTKMVREVLRSLRFRFNMKATTIKEANDITT 158

Query: 61  MRLEELFRSLRTFELSFNDN 80
           M+L+ELF SL+TFELS  DN
Sbjct: 159 MKLDELFGSLKTFELSLEDN 178

[Close]

BLAST of IVF0015787 vs. NCBI nr
Match: KAA0060153.1 (Receptor-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (267), Expect = 7.18e-27
Identity = 58/83 (69.88%), Postives = 64/83 (77.11%), Query Frame = 0


Query: 1   MAEDETITEFNVSVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTAT 60
           M EDET+ EFNV VLDLANESF L E+L DTKLVRKVLR LL   NMKVT IE+AN+   
Sbjct: 102 MVEDETLAEFNVHVLDLANESFTLGEKLTDTKLVRKVLRSLLPRLNMKVTAIEKANNIIV 161

Query: 61  MRLEELFRSLRTFELSFNDNVQK 83
           MRL+ELF SLRTF+LS  DN  K
Sbjct: 162 MRLDELFGSLRTFKLSVKDNSSK 184

The following BLAST results are available for this feature:

BLAST of IVF0015787 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0015787 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZ67	4.0e-27	100.00	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3BLP1	1.8e-22	72.62	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G...	[more]
A0A5D3BW07	5.7e-21	72.50	Receptor-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7T1K8	1.3e-20	71.25	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G...	[more]
A0A1S4E3G5	1.3e-20	71.25	uncharacterized protein LOC107991877 OS=Cucumis melo OX=3656 GN=LOC107991877 PE=...	[more]

BLAST of IVF0015787 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046529.1	1.62e-34	100.00	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK28729.1 putative m...	[more]
TYK00077.1	1.59e-28	72.62	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK19518.1	4.61e-28	69.88	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0046866.1	2.13e-27	72.50	Receptor-like protein 12 [Cucumis melo var. makuwa] >TYK03280.1 Receptor-like pr...	[more]
KAA0060153.1	7.18e-27	69.88	Receptor-like protein 12 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0015787 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0015787.1	IVF0015787.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding