Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAACCTCAAATCGTGCCCCGAGACATGTTTGGACGAGGGAGGAGGAGGGGACTCTTATGGAATGTTTAATGGAGCTAGTGTCAATGGGGGGATGGAAATCAGATAATGGTACATTCCGCCTAGGATACCTTGCGCAGTTGGTACGCATGATGGCGGAGAAACTACCTGGATGTCAGGTACGAGCAACAACTGTAATTGATTGTAGGATCAAGACACTGAAGCGAACGTTCCAGGCCATTGTCGAAATGCGGGGCCCAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCGTTGCGGAGAAGGAATTATTTGATAATTGGGTTAGGGTATGGAATATAATTTAAACGTGACACAACGTTCACAATGTACATTTAGTAAACAATTTTTCAATTAGTACTCATACGTCATTTTTTTTTGTGCCCGCAGTCGCATCCTGCAGCGAAAGGACTCCTGAACAAACCATTCCCGTATTACGACGAGCTTACATATGTATTTGGTCGCGATAGGGCGACCGGTCGGTTCGCTGAGACATTCGCGGACGTGGGGTCTAACGAGCCTGGTGGCGGATATGACAGATTTGATATGGGGGATGGAAACGAGGACTCCCGCCCGTGTACAACCAGGGAGTTGACATCTCGCAGGACGATGTACGTGCATCTCGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCAAGTGGATCGAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGATGTAGAAGCTATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGCAGATTGCGGAGTGGCCAGCACGCAACCTTGCAAATGACAACCACGTGCGCACGGAATTTTTCCGCATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTTCGGGGTTTCGTACTCATGCCTGAGGATGAAAGGGAGGGATTCTGTAGAGTCCTCCTACGAGACATAGAGAGATAG
mRNA sequence
ATGTCAACCTCAAATCGTGCCCCGAGACATGTTTGGACGAGGGAGGAGGAGGGGACTCTTATGGAATGTTTAATGGAGCTAGTGTCAATGGGGGGATGGAAATCAGATAATGGTACATTCCGCCTAGGATACCTTGCGCAGTTGGTACGCATGATGGCGGAGAAACTACCTGGATGTCAGGTACGAGCAACAACTGTAATTGATTGTAGGATCAAGACACTGAAGCGAACGTTCCAGGCCATTGTCGAAATGCGGGGCCCAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCGTTGCGGAGAAGGAATTATTTGATAATTGGTCGCATCCTGCAGCGAAAGGACTCCTGAACAAACCATTCCCGTATTACGACGAGCTTACATATGTATTTGGTCGCGATAGGGCGACCGGTCGGTTCGCTGAGACATTCGCGGACGTGGGGTCTAACGAGCCTGGTGGCGGATATGACAGATTTGATATGGGGGATGGAAACGAGGACTCCCGCCCGTGTACAACCAGGGAGTTGACATCTCGCAGGACGATGTACGTGCATCTCGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCAAGTGGATCGAAGAGGAAGAGGGGAATGGCCAGCACGCAACCTTGCAAATGACAACCACGTGCGCACGGAATTTTTCCGCATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTTCGGGGTTTCGTACTCATGCCTGAGGATGAAAGGGAGGGATTCTGTAGAGTCCTCCTACGAGACATAGAGAGATAG
Coding sequence (CDS)
ATGTCAACCTCAAATCGTGCCCCGAGACATGTTTGGACGAGGGAGGAGGAGGGGACTCTTATGGAATGTTTAATGGAGCTAGTGTCAATGGGGGGATGGAAATCAGATAATGGTACATTCCGCCTAGGATACCTTGCGCAGTTGGTACGCATGATGGCGGAGAAACTACCTGGATGTCAGGTACGAGCAACAACTGTAATTGATTGTAGGATCAAGACACTGAAGCGAACGTTCCAGGCCATTGTCGAAATGCGGGGCCCAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCGTTGCGGAGAAGGAATTATTTGATAATTGGTCGCATCCTGCAGCGAAAGGACTCCTGAACAAACCATTCCCGTATTACGACGAGCTTACATATGTATTTGGTCGCGATAGGGCGACCGGTCGGTTCGCTGAGACATTCGCGGACGTGGGGTCTAACGAGCCTGGTGGCGGATATGACAGATTTGATATGGGGGATGGAAACGAGGACTCCCGCCCGTGTACAACCAGGGAGTTGACATCTCGCAGGACGATGTACGTGCATCTCGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCAAGTGGATCGAAGAGGAAGAGGGGAATGGCCAGCACGCAACCTTGCAAATGACAACCACGTGCGCACGGAATTTTTCCGCATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTTCGGGGTTTCGTACTCATGCCTGAGGATGAAAGGGAGGGATTCTGTAGAGTCCTCCTACGAGACATAGAGAGATAG
Protein sequence
MSTSNRAPRHVWTREEEGTLMECLMELVSMGGWKSDNGTFRLGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIVEMRGPACSGFGWNDEEKCIVAEKELFDNWSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDSRPCTTRELTSRRTMYVHLDLLALQRVGPDQVDRRGRGEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER
Homology
BLAST of IVF0015432 vs. ExPASy TrEMBL
Match:
A0A5A7TRV1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold153G00290 PE=4 SV=1)
HSP 1 Score: 481.5 bits (1238), Expect = 2.4e-132
Identity = 249/311 (80.06%), Postives = 256/311 (82.32%), Query Frame = 0
Query: 1 MSTSNRAPRHVWTREEEGTLMECLMELVSMGGWKSDNGTFRLGYLAQLVRMMAEKLPGCQ 60
MSTSNRAPRHVWTREEEGTL+ECLMELVSMGGWKSDNGTFR GYLAQLVRMMAEKLPGCQ
Sbjct: 1 MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
Query: 61 VRATTVIDCRIKTLKRTFQAIVEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKG 120
VRATTVIDCRIKTLKRTFQAI EMRGPACSGFGWNDEEKCIVAEKELFDNW SHPAAKG
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120
Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNED-------- 180
LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNED
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180
Query: 181 ----------SRPC-----------TTRELTSRRTMYVHLDLLALQRVGPDQVDRRGR-- 240
SRP + R+ S+R + LAL DQ + + R
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL-----DQTNEQLREI 240
Query: 241 GEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 279
EWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG
Sbjct: 241 AEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 300
BLAST of IVF0015432 vs. ExPASy TrEMBL
Match:
A0A5D3DCZ1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00020 PE=4 SV=1)
HSP 1 Score: 481.5 bits (1238), Expect = 2.4e-132
Identity = 249/311 (80.06%), Postives = 256/311 (82.32%), Query Frame = 0
Query: 1 MSTSNRAPRHVWTREEEGTLMECLMELVSMGGWKSDNGTFRLGYLAQLVRMMAEKLPGCQ 60
MSTSNRAPRHVWTREEEGTL+ECLMELVSMGGWKSDNGTFR GYLAQLVRMMAEKLPGCQ
Sbjct: 1 MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
Query: 61 VRATTVIDCRIKTLKRTFQAIVEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKG 120
VRATTVIDCRIKTLKRTFQAI EMRGPACSGFGWNDEEKCIVAEKELFDNW SHPAAKG
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120
Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNED-------- 180
LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNED
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180
Query: 181 ----------SRPC-----------TTRELTSRRTMYVHLDLLALQRVGPDQVDRRGR-- 240
SRP + R+ S+R + LAL DQ + + R
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL-----DQTNEQLRQI 240
Query: 241 GEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 279
EWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG
Sbjct: 241 AEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 300
BLAST of IVF0015432 vs. ExPASy TrEMBL
Match:
A0A5A7SRU1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold708G00100 PE=4 SV=1)
HSP 1 Score: 481.5 bits (1238), Expect = 2.4e-132
Identity = 249/311 (80.06%), Postives = 256/311 (82.32%), Query Frame = 0
Query: 1 MSTSNRAPRHVWTREEEGTLMECLMELVSMGGWKSDNGTFRLGYLAQLVRMMAEKLPGCQ 60
MSTSNRAPRHVWTREEEGTL+ECLMELVSMGGWKSDNGTFR GYLAQLVRMMAEKLPGCQ
Sbjct: 1 MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
Query: 61 VRATTVIDCRIKTLKRTFQAIVEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKG 120
VRATTVIDCRIKTLKRTFQAI EMRGPACSGFGWNDEEKCIVAEKELFDNW SHPAAKG
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120
Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNED-------- 180
LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNED
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180
Query: 181 ----------SRPC-----------TTRELTSRRTMYVHLDLLALQRVGPDQVDRRGR-- 240
SRP + R+ S+R + LAL DQ + + R
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL-----DQTNEQLRQI 240
Query: 241 GEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 279
EWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG
Sbjct: 241 AEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 300
BLAST of IVF0015432 vs. ExPASy TrEMBL
Match:
A0A5D3CWL2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00640 PE=4 SV=1)
HSP 1 Score: 480.7 bits (1236), Expect = 4.1e-132
Identity = 248/306 (81.05%), Postives = 253/306 (82.68%), Query Frame = 0
Query: 1 MSTSNRAPRHVWTREEEGTLMECLMELVSMGGWKSDNGTFRLGYLAQLVRMMAEKLPGCQ 60
MSTSNRAPRHVWTREEEGTL+ECLMELVSMGGWKSDNGTFR GYLAQLVRMMAEKLPGCQ
Sbjct: 1 MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
Query: 61 VRATTVIDCRIKTLKRTFQAIVEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKG 120
VRATTVIDCRIKTLKRTFQAI EMRGPACSGFGWNDEEKCIVAEKELFDNW SHPAAKG
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120
Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNED-------- 180
LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNED
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180
Query: 181 ----------SRPC-----TTRELTSRRTMYVHLDL-LALQRVGPDQVDRRGR--GEWPA 240
SRP T S+R D L V DQ + + R +WPA
Sbjct: 181 VDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALDQTNEQLREIAQWPA 240
Query: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 279
RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL
Sbjct: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 300
BLAST of IVF0015432 vs. ExPASy TrEMBL
Match:
A0A5D3BCN9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001070 PE=4 SV=1)
HSP 1 Score: 480.3 bits (1235), Expect = 5.3e-132
Identity = 248/311 (79.74%), Postives = 256/311 (82.32%), Query Frame = 0
Query: 1 MSTSNRAPRHVWTREEEGTLMECLMELVSMGGWKSDNGTFRLGYLAQLVRMMAEKLPGCQ 60
MSTSNRAPRHVWTREEEGTL+ECLMELVSMGGWKSDNGTFR GYLAQLVRMMAEKLPGCQ
Sbjct: 1 MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
Query: 61 VRATTVIDCRIKTLKRTFQAIVEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKG 120
VRATTVIDCRIKTLKRTFQAI EMRGPACSGFGWNDEEKCIVAEKELFDNW SHPAAKG
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120
Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNED-------- 180
LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNED
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180
Query: 181 ----------SRPC-----------TTRELTSRRTMYVHLDLLALQRVGPDQVDRRGR-- 240
SRP + R+ S+R + LAL DQ + + R
Sbjct: 181 VDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHLAL-----DQTNEQLREI 240
Query: 241 GEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 279
+WPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG
Sbjct: 241 AQWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 300
BLAST of IVF0015432 vs. NCBI nr
Match:
KAA0033744.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0044866.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0046274.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0049705.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0057135.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 478 bits (1229), Expect = 3.21e-168
Identity = 249/311 (80.06%), Postives = 256/311 (82.32%), Query Frame = 0
Query: 1 MSTSNRAPRHVWTREEEGTLMECLMELVSMGGWKSDNGTFRLGYLAQLVRMMAEKLPGCQ 60
MSTSNRAPRHVWTREEEGTL+ECLMELVSMGGWKSDNGTFR GYLAQLVRMMAEKLPGCQ
Sbjct: 1 MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
Query: 61 VRATTVIDCRIKTLKRTFQAIVEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKG 120
VRATTVIDCRIKTLKRTFQAI EMRGPACSGFGWNDEEKCIVAEKELFDNW SHPAAKG
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120
Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNED-------- 180
LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNED
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180
Query: 181 ----------SRPC-----------TTRELTSRRTMYVHLDLLALQRVGPDQVDRRGR-- 240
SRP + R+ S+R + LAL DQ + + R
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL-----DQTNEQLREI 240
Query: 241 GEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 278
EWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG
Sbjct: 241 AEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 300
BLAST of IVF0015432 vs. NCBI nr
Match:
TYK21395.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24245.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 478 bits (1229), Expect = 3.21e-168
Identity = 249/311 (80.06%), Postives = 256/311 (82.32%), Query Frame = 0
Query: 1 MSTSNRAPRHVWTREEEGTLMECLMELVSMGGWKSDNGTFRLGYLAQLVRMMAEKLPGCQ 60
MSTSNRAPRHVWTREEEGTL+ECLMELVSMGGWKSDNGTFR GYLAQLVRMMAEKLPGCQ
Sbjct: 1 MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
Query: 61 VRATTVIDCRIKTLKRTFQAIVEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKG 120
VRATTVIDCRIKTLKRTFQAI EMRGPACSGFGWNDEEKCIVAEKELFDNW SHPAAKG
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120
Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNED-------- 180
LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNED
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180
Query: 181 ----------SRPC-----------TTRELTSRRTMYVHLDLLALQRVGPDQVDRRGR-- 240
SRP + R+ S+R + LAL DQ + + R
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL-----DQTNEQLRQI 240
Query: 241 GEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 278
EWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG
Sbjct: 241 AEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 300
BLAST of IVF0015432 vs. NCBI nr
Match:
TYJ96194.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96764.1 retrotransposon protein [Cucumis melo var. makuwa] >TYJ97116.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK01046.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK12167.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 476 bits (1226), Expect = 9.19e-168
Identity = 248/311 (79.74%), Postives = 256/311 (82.32%), Query Frame = 0
Query: 1 MSTSNRAPRHVWTREEEGTLMECLMELVSMGGWKSDNGTFRLGYLAQLVRMMAEKLPGCQ 60
MSTSNRAPRHVWTREEEGTL+ECLMELVSMGGWKSDNGTFR GYLAQLVRMMAEKLPGCQ
Sbjct: 1 MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
Query: 61 VRATTVIDCRIKTLKRTFQAIVEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKG 120
VRATTVIDCRIKTLKRTFQAI EMRGPACSGFGWNDEEKCIVAEKELFDNW SHPAAKG
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120
Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNED-------- 180
LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNED
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180
Query: 181 ----------SRPC-----------TTRELTSRRTMYVHLDLLALQRVGPDQVDRRGR-- 240
SRP + R+ S+R + LAL DQ + + R
Sbjct: 181 VDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHLAL-----DQTNEQLREI 240
Query: 241 GEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 278
+WPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG
Sbjct: 241 AQWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 300
BLAST of IVF0015432 vs. NCBI nr
Match:
KAA0031555.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0036352.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0043921.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0047622.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0049406.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 476 bits (1226), Expect = 9.19e-168
Identity = 248/306 (81.05%), Postives = 253/306 (82.68%), Query Frame = 0
Query: 1 MSTSNRAPRHVWTREEEGTLMECLMELVSMGGWKSDNGTFRLGYLAQLVRMMAEKLPGCQ 60
MSTSNRAPRHVWTREEEGTL+ECLMELVSMGGWKSDNGTFR GYLAQLVRMMAEKLPGCQ
Sbjct: 1 MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
Query: 61 VRATTVIDCRIKTLKRTFQAIVEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKG 120
VRATTVIDCRIKTLKRTFQAI EMRGPACSGFGWNDEEKCIVAEKELFDNW SHPAAKG
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120
Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNED-------- 180
LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNED
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180
Query: 181 ----------SRPCT-----TRELTSRRTMYVHLDL-LALQRVGPDQVDRRGR--GEWPA 240
SRP T S+R D L V DQ + + R +WPA
Sbjct: 181 VDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALDQTNEQLREIAQWPA 240
Query: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 278
RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL
Sbjct: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 300
BLAST of IVF0015432 vs. NCBI nr
Match:
KAA0032766.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 478 bits (1229), Expect = 1.26e-167
Identity = 249/311 (80.06%), Postives = 256/311 (82.32%), Query Frame = 0
Query: 1 MSTSNRAPRHVWTREEEGTLMECLMELVSMGGWKSDNGTFRLGYLAQLVRMMAEKLPGCQ 60
MSTSNRAPRHVWTREEEGTL+ECLMELVSMGGWKSDNGTFR GYLAQLVRMMAEKLPGCQ
Sbjct: 1 MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
Query: 61 VRATTVIDCRIKTLKRTFQAIVEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKG 120
VRATTVIDCRIKTLKRTFQAI EMRGPACSGFGWNDEEKCIVAEKELFDNW SHPAAKG
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120
Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNED-------- 180
LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNED
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180
Query: 181 ----------SRPC-----------TTRELTSRRTMYVHLDLLALQRVGPDQVDRRGR-- 240
SRP + R+ S+R + LAL DQ + + R
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL-----DQTNEQLRQI 240
Query: 241 GEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 278
EWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG
Sbjct: 241 AEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 300
BLAST of IVF0015432 vs. TAIR 10
Match:
AT5G27260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )
HSP 1 Score: 61.2 bits (147), Expect = 1.5e-09
Identity = 42/141 (29.79%), Postives = 70/141 (49.65%), Query Frame = 0
Query: 12 WTREEEGTLMECLMELVSMGGWKSDNGTFRLGYLAQLVRMMAE-KLPGCQVRATTVIDCR 71
W+ EE L++ L+E ++ W+ NGT + L + M E C+ + R
Sbjct: 17 WSPEETKLLVQLLVEGIN-NNWRDSNGT--ISKLTVETKFMPEINKEFCRSKNYNHYLSR 76
Query: 72 IKTLKRTFQAIVEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKGLLNKPFPYYD 131
+K LK +Q+ ++++ SGFGW+ K A E++ ++ +HP K L F ++D
Sbjct: 77 MKYLKIQYQSCLDLQ-RFSSGFGWDPLTKRFTASDEVWSDYLKAHPNNKQLRYDTFEFFD 136
Query: 132 ELTYVFGRDRATGRFAETFAD 150
EL +FG ATG+ A D
Sbjct: 137 ELQIIFGEGVATGKNAIGLCD 153
BLAST of IVF0015432 vs. TAIR 10
Match:
AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 48.9 bits (115), Expect = 7.6e-06
Identity = 35/137 (25.55%), Postives = 64/137 (46.72%), Query Frame = 0
Query: 9 RHVWTREEEGTLMECLMELVSMGGWKSDNGTFRLGYLAQLVRMMAEKLPGCQVRATTVID 68
R WT + L++ L+E V+ G TF ++V K G Q V+
Sbjct: 324 RIFWTPPMDYHLIDLLVEQVNNGNRVGQ--TFITSAWNEMVTAFNAKF-GSQ-HNKDVLK 383
Query: 69 CRIKTLKRTFQAIVEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKGLLNKPFPY 128
R K L+R + I + +GF W+ ++A+ ++++ + +HP A+ K P
Sbjct: 384 NRYKHLRRLYNDIKFLLEQ--NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPS 443
Query: 129 YDELTYVFGRDRATGRF 144
Y L ++FG++ + GR+
Sbjct: 444 YPNLCFIFGKETSDGRY 454
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7TRV1 | 2.4e-132 | 80.06 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3DCZ1 | 2.4e-132 | 80.06 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7SRU1 | 2.4e-132 | 80.06 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3CWL2 | 4.1e-132 | 81.05 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3BCN9 | 5.3e-132 | 79.74 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
KAA0033744.1 | 3.21e-168 | 80.06 | retrotransposon protein [Cucumis melo var. makuwa] >KAA0044866.1 retrotransposon... | [more] |
TYK21395.1 | 3.21e-168 | 80.06 | retrotransposon protein [Cucumis melo var. makuwa] >TYK24245.1 retrotransposon p... | [more] |
TYJ96194.1 | 9.19e-168 | 79.74 | retrotransposon protein [Cucumis melo var. makuwa] >TYJ96764.1 retrotransposon p... | [more] |
KAA0031555.1 | 9.19e-168 | 81.05 | retrotransposon protein [Cucumis melo var. makuwa] >KAA0036352.1 retrotransposon... | [more] |
KAA0032766.1 | 1.26e-167 | 80.06 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
AT5G27260.1 | 1.5e-09 | 29.79 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |
AT2G24960.2 | 7.6e-06 | 25.55 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |