IVF0015223 (gene) Melon (IVF77) v1

Overview
NameIVF0015223
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr01: 8810067 .. 8810234 (-)
RNA-Seq ExpressionIVF0015223
SyntenyIVF0015223
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATATTGCGAGGACGTTGACGACGTGGACGAGGGGGACTCTACATACGCGACGATCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACCTAGCCGAATCGATGTTCACCGATTGGCAGTTGCGTAACGCTTAG

mRNA sequence

ATGACATATTGCGAGGACGTTGACGACGTGGACGAGGGGGACTCTACATACGCGACGATCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACCTAGCCGAATCGATGTTCACCGATTGGCAGTTGCGTAACGCTTAG

Coding sequence (CDS)

ATGACATATTGCGAGGACGTTGACGACGTGGACGAGGGGGACTCTACATACGCGACGATCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACCTAGCCGAATCGATGTTCACCGATTGGCAGTTGCGTAACGCTTAG

Protein sequence

MTYCEDVDDVDEGDSTYATITASEDIQYIETTNEWSQWRDDLAESMFTDWQLRNA
Homology
BLAST of IVF0015223 vs. ExPASy TrEMBL
Match: A0A5A7U3B3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold172G00460 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.3e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1   MTYCEDVDDVDEGDSTYATITASEDIQYIETTNEWSQWRDDLAESMFTDWQLRNA 56
           MTYCEDVDDVDEGDSTYATITASEDIQYIETTNEWSQWRDDLAESMFTDWQLRNA
Sbjct: 315 MTYCEDVDDVDEGDSTYATITASEDIQYIETTNEWSQWRDDLAESMFTDWQLRNA 369

BLAST of IVF0015223 vs. ExPASy TrEMBL
Match: A0A5A7ST53 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002720 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 9.9e-22
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 1   MTYCEDVDDVDEGDSTYATITASEDIQYIETTNEWSQWRDDLAESMFTDWQLRNA 56
           MTYCEDVDD DEGDSTYAT TASEDIQYIETTNEWSQWRDDLAESMFTDWQLRN+
Sbjct: 281 MTYCEDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTDWQLRNS 335

BLAST of IVF0015223 vs. ExPASy TrEMBL
Match: A0A5D3C4P9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9399G00010 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 9.9e-22
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 1   MTYCEDVDDVDEGDSTYATITASEDIQYIETTNEWSQWRDDLAESMFTDWQLRNA 56
           MTYCEDVDD DEGDSTYAT TASEDIQYIETTNEWSQWRDDLAESMFTDWQLRN+
Sbjct: 53  MTYCEDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTDWQLRNS 107

BLAST of IVF0015223 vs. ExPASy TrEMBL
Match: A0A5A7SMG5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold417G00160 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.3e-21
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 1   MTYCEDVDDVDEGDSTYATITASEDIQYIETTNEWSQWRDDLAESMFTDWQLRNA 56
           MTYCEDVDDVDEGDSTYAT TASEDIQYIETTNEWSQWRDDLAES+ TDWQLRNA
Sbjct: 233 MTYCEDVDDVDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESILTDWQLRNA 287

BLAST of IVF0015223 vs. ExPASy TrEMBL
Match: A0A5D3C0Q5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00540 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.3e-21
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 1   MTYCEDVDDVDEGDSTYATITASEDIQYIETTNEWSQWRDDLAESMFTDWQLRNA 56
           MTYCEDVDDVDEGDSTYAT TASEDIQYIETTNEWSQWRDDLAES+ TDWQLRNA
Sbjct: 229 MTYCEDVDDVDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESILTDWQLRNA 283

BLAST of IVF0015223 vs. NCBI nr
Match: TYK05336.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (279), Expect = 2.26e-30
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 1   MTYCEDVDDVDEGDSTYATITASEDIQYIETTNEWSQWRDDLAESMFTDWQLRNA 55
           MTYCEDVDD DEGDSTYAT TASEDIQYIETTNEWSQWRDDLAESMFTDWQLRN+
Sbjct: 53  MTYCEDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTDWQLRNS 107

BLAST of IVF0015223 vs. NCBI nr
Match: KAA0048777.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK31557.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (293), Expect = 8.01e-30
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1   MTYCEDVDDVDEGDSTYATITASEDIQYIETTNEWSQWRDDLAESMFTDWQLRNA 55
           MTYCEDVDDVDEGDSTYATITASEDIQYIETTNEWSQWRDDLAESMFTDWQLRNA
Sbjct: 315 MTYCEDVDDVDEGDSTYATITASEDIQYIETTNEWSQWRDDLAESMFTDWQLRNA 369

BLAST of IVF0015223 vs. NCBI nr
Match: KAA0054051.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (270), Expect = 1.26e-29
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0

Query: 1  MTYCEDVDDVDEGDSTYATITASEDIQYIETTNEWSQWRDDLAESMFTDWQLRNA 55
          MTYC+D+DDVDEGDS YAT TASEDI YIETTNEWSQWRD+LAESMFTDWQLRNA
Sbjct: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55

BLAST of IVF0015223 vs. NCBI nr
Match: KAA0062284.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (274), Expect = 1.31e-29
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 1   MTYCEDVDDVDEGDSTYATITASEDIQYIETTNEWSQWRDDLAESMFTDWQLRNA 55
           MTYC+D+DD DEGDSTYAT TASEDIQYIETTNEWSQWRDDLAESMFT+WQLRNA
Sbjct: 53  MTYCDDIDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 107

BLAST of IVF0015223 vs. NCBI nr
Match: KAA0058871.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK23750.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (274), Expect = 1.31e-29
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 0

Query: 1   MTYCEDVDDVDEGDSTYATITASEDIQYIETTNEWSQWRDDLAESMFTDWQLRNA 55
           MTYCEDVDD DEGDSTY T TASEDIQYIETTNEWSQWRDDLAESMFT+WQLRNA
Sbjct: 53  MTYCEDVDDEDEGDSTYGTTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U3B32.3e-23100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7ST539.9e-2294.55Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3C4P99.9e-2294.55Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SMG51.3e-2194.55Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3C0Q51.3e-2194.55Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
TYK05336.12.26e-3094.55retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0048777.18.01e-30100.00retrotransposon protein [Cucumis melo var. makuwa] >TYK31557.1 retrotransposon p... [more]
KAA0054051.11.26e-2989.09retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon p... [more]
KAA0062284.11.31e-2990.91retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0058871.11.31e-2992.73retrotransposon protein [Cucumis melo var. makuwa] >TYK23750.1 retrotransposon p... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0015223.1IVF0015223.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding