IVF0015043 (gene) Melon (IVF77) v1

Overview


Name	IVF0015043
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr03: 3524430 .. 3524747 (+)
RNA-Seq Expression	IVF0015043
Synteny	IVF0015043

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTACTACGAAGTTTGAAATTGAAAATTTTGATGGGAATAGAGACTTTACCTCGTGGACAAAAAGAATTACTGCAATCTTGGGTTCACAAAAGGCCTTGAAAGCTTCAGAAGACCCTAAAGAACTCCCTGCAACCTTGACCAAATCAGAAAGAGAAACATTGGAAGAGGTAGCTTACAATACACTTATCATGAATATTACTGATAATGTGCTGAGACAAGTAATTGAAGAAACCATTGCTTTTACTAGTTGGGAGAAATTGAAGTCGTTGTATGAAAAGAAAGATCTACCAAATAAGATATTCATAAGGGAGTAG

mRNA sequence

ATGACTACTACGAAGTTTGAAATTGAAAATTTTGATGGGAATAGAGACTTTACCTCGTGGACAAAAAGAATTACTGCAATCTTGGGTTCACAAAAGGCCTTGAAAGCTTCAGAAGACCCTAAAGAACTCCCTGCAACCTTGACCAAATCAGAAAGAGAAACATTGGAAGAGGTAGCTTACAATACACTTATCATGAATATTACTGATAATGTGCTGAGACAAGTAATTGAAGAAACCATTGCTTTTACTAGTTGGGAGAAATTGAAGTCGTTGTATGAAAAGAAAGATCTACCAAATAAGATATTCATAAGGGAGTAG

Coding sequence (CDS)

ATGACTACTACGAAGTTTGAAATTGAAAATTTTGATGGGAATAGAGACTTTACCTCGTGGACAAAAAGAATTACTGCAATCTTGGGTTCACAAAAGGCCTTGAAAGCTTCAGAAGACCCTAAAGAACTCCCTGCAACCTTGACCAAATCAGAAAGAGAAACATTGGAAGAGGTAGCTTACAATACACTTATCATGAATATTACTGATAATGTGCTGAGACAAGTAATTGAAGAAACCATTGCTTTTACTAGTTGGGAGAAATTGAAGTCGTTGTATGAAAAGAAAGATCTACCAAATAAGATATTCATAAGGGAGTAG

Protein sequence

MTTTKFEIENFDGNRDFTSWTKRITAILGSQKALKASEDPKELPATLTKSERETLEEVAYNTLIMNITDNVLRQVIEETIAFTSWEKLKSLYEKKDLPNKIFIRE

Homology

[Close]

BLAST of IVF0015043 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.0e-09
Identity = 30/105 (28.57%), Postives = 62/105 (59.05%), Query Frame = 0


Query: 1   MTTTKFEIENFDGNRDFTSWTKRITAILGSQKALKASEDPKELPATLTKSERETLEEVAY 60
           M+  K+E+  F+G+  F++W +R+  +L  Q   K  +   + P T+   +   L+E A 
Sbjct: 1   MSGVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAA 60

Query: 61  NTLIMNITDNVLRQVIEETIAFTSWEKLKSLYEKKDLPNKIFIRE 106
           + + ++++D+V+  +I+E  A   W +L+SLY  K L NK+++++
Sbjct: 61  SAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKK 105

[Close]

BLAST of IVF0015043 vs. ExPASy TrEMBL
Match: A0A5A7U6R2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00930 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 6.0e-44
Identity = 95/105 (90.48%), Postives = 99/105 (94.29%), Query Frame = 0


Query: 1   MTTTKFEIENFDGNRDFTSWTKRITAILGSQKALKASEDPKELPATLTKSERETLEEVAY 60
           MTTTKFEIE FDGN DFT WTKRITAILGSQKALKA EDPKELPATLTKSERETLEEVAY
Sbjct: 1   MTTTKFEIEKFDGNGDFTLWTKRITAILGSQKALKALEDPKELPATLTKSERETLEEVAY 60

Query: 61  NTLIMNITDNVLRQVIEETIAFTSWEKLKSLYEKKDLPNKIFIRE 106
           +TLIMNITDNVLRQVIEET AF +WEKLKSLYEKKDLPNK+FI+E
Sbjct: 61  STLIMNITDNVLRQVIEETTAFATWEKLKSLYEKKDLPNKMFIKE 105

[Close]

BLAST of IVF0015043 vs. ExPASy TrEMBL
Match: A0A5A7UZ07 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00070 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.4e-40
Identity = 91/105 (86.67%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 1   MTTTKFEIENFDGNRDFTSWTKRITAILGSQKALKASEDPKELPATLTKSERETLEEVAY 60
           MTTTKFEIE FDGN DFT  TKRITAILGSQKALKA EDPKEL ATLTKSERETLEEVAY
Sbjct: 1   MTTTKFEIEKFDGNGDFTLGTKRITAILGSQKALKALEDPKELLATLTKSERETLEEVAY 60

Query: 61  NTLIMNITDNVLRQVIEETIAFTSWEKLKSLYEKKDLPNKIFIRE 106
            TLIMNIT+NVLRQ+IEET AF +WEKLKSLYEKKDLPNK+FIR+
Sbjct: 61  GTLIMNITENVLRQIIEETTAFVTWEKLKSLYEKKDLPNKMFIRD 105

[Close]

BLAST of IVF0015043 vs. ExPASy TrEMBL
Match: A0A5D3DVM0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00690 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 9.0e-40
Identity = 91/105 (86.67%), Postives = 94/105 (89.52%), Query Frame = 0


Query: 1   MTTTKFEIENFDGNRDFTSWTKRITAILGSQKALKASEDPKELPATLTKSERETLEEVAY 60
           MTTTKFEIE FDGN DFT  TKRITA LGSQKALKA EDPKELPATLTKSERETLEEVAY
Sbjct: 1   MTTTKFEIEKFDGNGDFTLLTKRITASLGSQKALKALEDPKELPATLTKSERETLEEVAY 60

Query: 61  NTLIMNITDNVLRQVIEETIAFTSWEKLKSLYEKKDLPNKIFIRE 106
           +TLIMNITDNVLRQVIEET  F +WE LKSLYEKKDL NK+FIRE
Sbjct: 61  STLIMNITDNVLRQVIEETTGFATWEILKSLYEKKDLSNKMFIRE 105

[Close]

BLAST of IVF0015043 vs. ExPASy TrEMBL
Match: A0A5A7UJ23 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43052G001360 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.6e-36
Identity = 85/95 (89.47%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MTTTKFEIENFDGNRDFTSWTKRITAILGSQKALKASEDPKELPATLTKSERETLEEVAY 60
          MTTTKFEIENFDGNRDFTSWTKRITAILGSQKALKASEDPKELPATLTKSERETLEEVAY
Sbjct: 1  MTTTKFEIENFDGNRDFTSWTKRITAILGSQKALKASEDPKELPATLTKSERETLEEVAY 60

Query: 61 NTLIMNITDNVLRQVIEETIAFTS-WEKLKSLYEK 95
          NTLIMNITDNVLRQVIEETIAFT+ ++KL + + +
Sbjct: 61 NTLIMNITDNVLRQVIEETIAFTNEFKKLTNAFNQ 95

[Close]

BLAST of IVF0015043 vs. ExPASy TrEMBL
Match: A0A5D3DST2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00160 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.5e-26
Identity = 64/74 (86.49%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 1  MTTTKFEIENFDGNRDFTSWTKRITAILGSQKALKASEDPKELPATLTKSERETLEEVAY 60
          MTTTKFEIE FDGN DFTSWT+RIT I GSQK LKA EDPKELPATLTKSERETLEEVAY
Sbjct: 1  MTTTKFEIEKFDGNGDFTSWTRRITTIFGSQKTLKALEDPKELPATLTKSERETLEEVAY 60

Query: 61 NTLIMNITDNVLRQ 75
           TL+MNITDN+LRQ
Sbjct: 61 GTLVMNITDNMLRQ 74

[Close]

BLAST of IVF0015043 vs. NCBI nr
Match: KAA0051442.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK22211.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 188 bits (478), Expect = 5.38e-53
Identity = 95/105 (90.48%), Postives = 99/105 (94.29%), Query Frame = 0


Query: 1   MTTTKFEIENFDGNRDFTSWTKRITAILGSQKALKASEDPKELPATLTKSERETLEEVAY 60
           MTTTKFEIE FDGN DFT WTKRITAILGSQKALKA EDPKELPATLTKSERETLEEVAY
Sbjct: 1   MTTTKFEIEKFDGNGDFTLWTKRITAILGSQKALKALEDPKELPATLTKSERETLEEVAY 60

Query: 61  NTLIMNITDNVLRQVIEETIAFTSWEKLKSLYEKKDLPNKIFIRE 105
           +TLIMNITDNVLRQVIEET AF +WEKLKSLYEKKDLPNK+FI+E
Sbjct: 61  STLIMNITDNVLRQVIEETTAFATWEKLKSLYEKKDLPNKMFIKE 105

[Close]

BLAST of IVF0015043 vs. NCBI nr
Match: KAA0060284.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa] >TYK22034.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa])

HSP 1 Score: 177 bits (449), Expect = 8.78e-50
Identity = 91/105 (86.67%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 1   MTTTKFEIENFDGNRDFTSWTKRITAILGSQKALKASEDPKELPATLTKSERETLEEVAY 60
           MTTTKFEIE FDGN DFT  TKRITAILGSQKALKA EDPKEL ATLTKSERETLEEVAY
Sbjct: 1   MTTTKFEIEKFDGNGDFTLGTKRITAILGSQKALKALEDPKELLATLTKSERETLEEVAY 60

Query: 61  NTLIMNITDNVLRQVIEETIAFTSWEKLKSLYEKKDLPNKIFIRE 105
            TLIMNIT+NVLRQ+IEET AF +WEKLKSLYEKKDLPNK+FIR+
Sbjct: 61  GTLIMNITENVLRQIIEETTAFVTWEKLKSLYEKKDLPNKMFIRD 105

[Close]

BLAST of IVF0015043 vs. NCBI nr
Match: TYK27723.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 174 bits (442), Expect = 1.91e-48
Identity = 91/105 (86.67%), Postives = 94/105 (89.52%), Query Frame = 0


Query: 1   MTTTKFEIENFDGNRDFTSWTKRITAILGSQKALKASEDPKELPATLTKSERETLEEVAY 60
           MTTTKFEIE FDGN DFT  TKRITA LGSQKALKA EDPKELPATLTKSERETLEEVAY
Sbjct: 1   MTTTKFEIEKFDGNGDFTLLTKRITASLGSQKALKALEDPKELPATLTKSERETLEEVAY 60

Query: 61  NTLIMNITDNVLRQVIEETIAFTSWEKLKSLYEKKDLPNKIFIRE 105
           +TLIMNITDNVLRQVIEET  F +WE LKSLYEKKDL NK+FIRE
Sbjct: 61  STLIMNITDNVLRQVIEETTGFATWEILKSLYEKKDLSNKMFIRE 105

[Close]

BLAST of IVF0015043 vs. NCBI nr
Match: KAA0054988.1 (hypothetical protein E6C27_scaffold43052G001360 [Cucumis melo var. makuwa])

HSP 1 Score: 163 bits (413), Expect = 3.97e-44
Identity = 85/95 (89.47%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MTTTKFEIENFDGNRDFTSWTKRITAILGSQKALKASEDPKELPATLTKSERETLEEVAY 60
          MTTTKFEIENFDGNRDFTSWTKRITAILGSQKALKASEDPKELPATLTKSERETLEEVAY
Sbjct: 1  MTTTKFEIENFDGNRDFTSWTKRITAILGSQKALKASEDPKELPATLTKSERETLEEVAY 60

Query: 61 NTLIMNITDNVLRQVIEETIAFTS-WEKLKSLYEK 94
          NTLIMNITDNVLRQVIEETIAFT+ ++KL + + +
Sbjct: 61 NTLIMNITDNVLRQVIEETIAFTNEFKKLTNAFNQ 95

[Close]

BLAST of IVF0015043 vs. NCBI nr
Match: KAA0040138.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 129 bits (323), Expect = 4.35e-35
Identity = 62/105 (59.05%), Postives = 79/105 (75.24%), Query Frame = 0


Query: 1   MTTTKFEIENFDGNRDFTSWTKRITAILGSQKALKASEDPKELPATLTKSERETLEEVAY 60
           M TTKFEIE F+G  DFT W KRI AIL SQ ALK  +DPK LPAT+ + +++++EE  Y
Sbjct: 1   MVTTKFEIERFNGGGDFTLWAKRIQAILSSQNALKDIQDPKNLPATMNEVDKQSMEETTY 60

Query: 61  NTLIMNITDNVLRQVIEETIAFTSWEKLKSLYEKKDLPNKIFIRE 105
             LI+NITDNVLRQVI E   +   EKL +LY+KKDLP+K+++RE
Sbjct: 61  EILILNITDNVLRQVINENTTYEICEKLTALYDKKDLPSKLYMRE 105

The following BLAST results are available for this feature:

BLAST of IVF0015043 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	6.0e-09	28.57	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of IVF0015043 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U6R2	6.0e-44	90.48	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UZ07	1.4e-40	86.67	Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw...	[more]
A0A5D3DVM0	9.0e-40	86.67	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UJ23	1.6e-36	89.47	Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3DST2	2.5e-26	86.49	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of IVF0015043 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051442.1	5.38e-53	90.48	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0060284.1	8.78e-50	86.67	retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]...	[more]
TYK27723.1	1.91e-48	86.67	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0054988.1	3.97e-44	89.47	hypothetical protein E6C27_scaffold43052G001360 [Cucumis melo var. makuwa]	[more]
KAA0040138.1	4.35e-35	59.05	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of IVF0015043 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 56..104 e-value: 3.9E-8 score: 33.2
None	No IPR available	PANTHER	PTHR34676:SF6	SUBFAMILY NOT NAMED	coord: 1..104
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 1..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0015043.2	IVF0015043.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding