IVF0014830 (gene) Melon (IVF77) v1

Overview


Name	IVF0014830
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr04: 13279763 .. 13280146 (-)
RNA-Seq Expression	IVF0014830
Synteny	IVF0014830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACCTCCTCAAGCACCACCTATGGTAATTAACCACAATGATAACCAAGATGAGGGTGATGGTTCTGATGGCTTAGACGATGACCAAGTTACATTATTGGAGGAGTCGAGACGTGAGGGACATGAAGTAGTTAGAAGAAAAGGTCGTGGGAGAGCTTATCAAAATATCCAAAGGAGAGCTCAACAAGAAGCACCTCAATTTGAGCGTAACATAGAAGCCATCAAATTTAAAATTTCCAAGTTCTTCGGGAAAACTGATCCAGAGGAGTACATTCAGTGGGAAAAAGAGGTGGAGAATGTGTTTGCTTGCCATAATTTTACTAACGAGCAGAAGGTTAGATTTTGTGTTTTCAAATTTAAGGATTATGCTCAAACTAGGTGA

mRNA sequence

ATGCCACCTCCTCAAGCACCACCTATGGTAATTAACCACAATGATAACCAAGATGAGGGTGATGGTTCTGATGGCTTAGACGATGACCAAGTTACATTATTGGAGGAGTCGAGACGTGAGGGACATGAAGTAGTTAGAAGAAAAGGTCGTGGGAGAGCTTATCAAAATATCCAAAGGAGAGCTCAACAAGAAGCACCTCAATTTGAGCGTAACATAGAAGCCATCAAATTTAAAATTTCCAAGTTCTTCGGGAAAACTGATCCAGAGGAGTACATTCAGTGGGAAAAAGAGGTGGAGAATGTGTTTGCTTGCCATAATTTTACTAACGAGCAGAAGGTTAGATTTTGTGTTTTCAAATTTAAGGATTATGCTCAAACTAGGTGA

Coding sequence (CDS)

ATGCCACCTCCTCAAGCACCACCTATGGTAATTAACCACAATGATAACCAAGATGAGGGTGATGGTTCTGATGGCTTAGACGATGACCAAGTTACATTATTGGAGGAGTCGAGACGTGAGGGACATGAAGTAGTTAGAAGAAAAGGTCGTGGGAGAGCTTATCAAAATATCCAAAGGAGAGCTCAACAAGAAGCACCTCAATTTGAGCGTAACATAGAAGCCATCAAATTTAAAATTTCCAAGTTCTTCGGGAAAACTGATCCAGAGGAGTACATTCAGTGGGAAAAAGAGGTGGAGAATGTGTTTGCTTGCCATAATTTTACTAACGAGCAGAAGGTTAGATTTTGTGTTTTCAAATTTAAGGATTATGCTCAAACTAGGTGA

Protein sequence

MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRRAQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVENVFACHNFTNEQKVRFCVFKFKDYAQTR

Homology

[Close]

BLAST of IVF0014830 vs. ExPASy TrEMBL
Match: A0A5A7T993 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001470 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 8.8e-66
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRR 60
           MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRR
Sbjct: 1   MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRR 60

Query: 61  AQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVENVFACHNFTNEQKVRFCVFKF 120
           AQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVENVFACHNFTNEQKVRFCVFKF
Sbjct: 61  AQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVENVFACHNFTNEQKVRFCVFKF 120

Query: 121 KDYAQTR 128
           KDYAQTR
Sbjct: 121 KDYAQTR 127

[Close]

BLAST of IVF0014830 vs. ExPASy TrEMBL
Match: A0A5D3CHG3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G001250 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.4e-50
Identity = 105/126 (83.33%), Postives = 111/126 (88.10%), Query Frame = 0


Query: 1   MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRR 60
           MPPP APPM+INHNDNQDEGDGSD LDDDQVTLL E RR GH VVRR+GRGRAYQNIQRR
Sbjct: 25  MPPPLAPPMLINHNDNQDEGDGSDDLDDDQVTLLGEPRRVGHGVVRRRGRGRAYQNIQRR 84

Query: 61  AQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVENVFACHNFTNEQKVRFCVFKF 120
           AQQEA QFE N+ AIKFKI KFF KTDP+EYI+WEKEVENVF CHNFT+EQKVRF V K 
Sbjct: 85  AQQEASQFECNMRAIKFKIPKFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKL 144

Query: 121 KDYAQT 127
           KDYAQT
Sbjct: 145 KDYAQT 150

[Close]

BLAST of IVF0014830 vs. ExPASy TrEMBL
Match: A0A5A7TK52 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G001000 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.4e-50
Identity = 105/126 (83.33%), Postives = 111/126 (88.10%), Query Frame = 0


Query: 1   MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRR 60
           MPPP APPM+INHNDNQDEGDGSD LDDDQVTLL E RR GH VVRR+GRGRAYQNIQRR
Sbjct: 45  MPPPLAPPMLINHNDNQDEGDGSDDLDDDQVTLLGEPRRVGHGVVRRRGRGRAYQNIQRR 104

Query: 61  AQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVENVFACHNFTNEQKVRFCVFKF 120
           AQQEA QFE N+ AIKFKI KFF KTDP+EYI+WEKEVENVF CHNFT+EQKVRF V K 
Sbjct: 105 AQQEASQFECNMRAIKFKIPKFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKL 164

Query: 121 KDYAQT 127
           KDYAQT
Sbjct: 165 KDYAQT 170

[Close]

BLAST of IVF0014830 vs. ExPASy TrEMBL
Match: A0A5A7TYI0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold829G00200 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 5.2e-50
Identity = 103/126 (81.75%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 1   MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRR 60
           MPPP AP M INHN+NQ EGDG D LDDDQVTLL E RR GH VVRR+G G+AYQNIQRR
Sbjct: 21  MPPPLAPLMAINHNNNQYEGDGLDDLDDDQVTLLVEPRRVGHGVVRRRGHGKAYQNIQRR 80

Query: 61  AQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVENVFACHNFTNEQKVRFCVFKF 120
            QQE PQ ERN+ AIKFKI KFFGKTDPEEYIQWEKEVENVFACHNF+NEQKVRFCV KF
Sbjct: 81  TQQETPQLERNMAAIKFKIPKFFGKTDPEEYIQWEKEVENVFACHNFSNEQKVRFCVAKF 140

Query: 121 KDYAQT 127
           KDY QT
Sbjct: 141 KDYDQT 146

[Close]

BLAST of IVF0014830 vs. ExPASy TrEMBL
Match: A0A5D3CFQ1 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00990 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.9e-31
Identity = 71/86 (82.56%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 41  GHEVVRRKGRGRAYQNIQRRAQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVEN 100
           G+ VVRR+GR RAYQNIQRRAQQEAP+FE N+ AIKFKI KFF KTDPEEYIQWEKEVEN
Sbjct: 9   GYGVVRRRGRRRAYQNIQRRAQQEAPRFECNMGAIKFKIPKFFRKTDPEEYIQWEKEVEN 68

Query: 101 VFACHNFTNEQKVRFCVFKFKDYAQT 127
           VF CHNF +EQKVRFCV KFKDYA T
Sbjct: 69  VFVCHNFIDEQKVRFCVSKFKDYAHT 94

[Close]

BLAST of IVF0014830 vs. NCBI nr
Match: KAA0038045.1 (uncharacterized protein E6C27_scaffold36G002470 [Cucumis melo var. makuwa] >TYK20558.1 uncharacterized protein E5676_scaffold237G001470 [Cucumis melo var. makuwa])

HSP 1 Score: 260 bits (664), Expect = 1.96e-85
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRR 60
           MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRR
Sbjct: 1   MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRR 60

Query: 61  AQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVENVFACHNFTNEQKVRFCVFKF 120
           AQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVENVFACHNFTNEQKVRFCVFKF
Sbjct: 61  AQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVENVFACHNFTNEQKVRFCVFKF 120

Query: 121 KDYAQTR 127
           KDYAQTR
Sbjct: 121 KDYAQTR 127

[Close]

BLAST of IVF0014830 vs. NCBI nr
Match: TYK09709.1 (uncharacterized protein E5676_scaffold447G001250 [Cucumis melo var. makuwa])

HSP 1 Score: 209 bits (533), Expect = 3.09e-66
Identity = 105/126 (83.33%), Postives = 111/126 (88.10%), Query Frame = 0


Query: 1   MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRR 60
           MPPP APPM+INHNDNQDEGDGSD LDDDQVTLL E RR GH VVRR+GRGRAYQNIQRR
Sbjct: 25  MPPPLAPPMLINHNDNQDEGDGSDDLDDDQVTLLGEPRRVGHGVVRRRGRGRAYQNIQRR 84

Query: 61  AQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVENVFACHNFTNEQKVRFCVFKF 120
           AQQEA QFE N+ AIKFKI KFF KTDP+EYI+WEKEVENVF CHNFT+EQKVRF V K 
Sbjct: 85  AQQEASQFECNMRAIKFKIPKFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKL 144

Query: 121 KDYAQT 126
           KDYAQT
Sbjct: 145 KDYAQT 150

[Close]

BLAST of IVF0014830 vs. NCBI nr
Match: KAA0047036.1 (uncharacterized protein E6C27_scaffold829G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 207 bits (528), Expect = 3.21e-66
Identity = 103/126 (81.75%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 1   MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRR 60
           MPPP AP M INHN+NQ EGDG D LDDDQVTLL E RR GH VVRR+G G+AYQNIQRR
Sbjct: 21  MPPPLAPLMAINHNNNQYEGDGLDDLDDDQVTLLVEPRRVGHGVVRRRGHGKAYQNIQRR 80

Query: 61  AQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVENVFACHNFTNEQKVRFCVFKF 120
            QQE PQ ERN+ AIKFKI KFFGKTDPEEYIQWEKEVENVFACHNF+NEQKVRFCV KF
Sbjct: 81  TQQETPQLERNMAAIKFKIPKFFGKTDPEEYIQWEKEVENVFACHNFSNEQKVRFCVAKF 140

Query: 121 KDYAQT 126
           KDY QT
Sbjct: 141 KDYDQT 146

[Close]

BLAST of IVF0014830 vs. NCBI nr
Match: KAA0043652.1 (uncharacterized protein E6C27_scaffold320G001000 [Cucumis melo var. makuwa])

HSP 1 Score: 209 bits (533), Expect = 5.83e-66
Identity = 105/126 (83.33%), Postives = 111/126 (88.10%), Query Frame = 0


Query: 1   MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRR 60
           MPPP APPM+INHNDNQDEGDGSD LDDDQVTLL E RR GH VVRR+GRGRAYQNIQRR
Sbjct: 45  MPPPLAPPMLINHNDNQDEGDGSDDLDDDQVTLLGEPRRVGHGVVRRRGRGRAYQNIQRR 104

Query: 61  AQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVENVFACHNFTNEQKVRFCVFKF 120
           AQQEA QFE N+ AIKFKI KFF KTDP+EYI+WEKEVENVF CHNFT+EQKVRF V K 
Sbjct: 105 AQQEASQFECNMRAIKFKIPKFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKL 164

Query: 121 KDYAQT 126
           KDYAQT
Sbjct: 165 KDYAQT 170

[Close]

BLAST of IVF0014830 vs. NCBI nr
Match: KAA0040916.1 (uncharacterized protein E6C27_scaffold125G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 145 bits (365), Expect = 4.26e-41
Identity = 71/86 (82.56%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 41  GHEVVRRKGRGRAYQNIQRRAQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVEN 100
           G+ VVRR+GR RAYQNIQRRAQQEAP+FE N+ AIKFKI KFF KTDPEEYIQWEKEVEN
Sbjct: 9   GYGVVRRRGRRRAYQNIQRRAQQEAPRFECNMGAIKFKIPKFFRKTDPEEYIQWEKEVEN 68

Query: 101 VFACHNFTNEQKVRFCVFKFKDYAQT 126
           VF CHNF +EQKVRFCV KFKDYA T
Sbjct: 69  VFVCHNFIDEQKVRFCVSKFKDYAHT 94

The following BLAST results are available for this feature:

BLAST of IVF0014830 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0014830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T993	8.8e-66	100.00	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3CHG3	1.4e-50	83.33	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7TK52	1.4e-50	83.33	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7TYI0	5.2e-50	81.75	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CFQ1	1.9e-31	82.56	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]

BLAST of IVF0014830 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038045.1	1.96e-85	100.00	uncharacterized protein E6C27_scaffold36G002470 [Cucumis melo var. makuwa] >TYK2...	[more]
TYK09709.1	3.09e-66	83.33	uncharacterized protein E5676_scaffold447G001250 [Cucumis melo var. makuwa]	[more]
KAA0047036.1	3.21e-66	81.75	uncharacterized protein E6C27_scaffold829G00200 [Cucumis melo var. makuwa]	[more]
KAA0043652.1	5.83e-66	83.33	uncharacterized protein E6C27_scaffold320G001000 [Cucumis melo var. makuwa]	[more]
KAA0040916.1	4.26e-41	82.56	uncharacterized protein E6C27_scaffold125G00290 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0014830 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62
None	No IPR available	PANTHER	PTHR35046	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN	coord: 57..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0014830.1	IVF0014830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding