IVF0014700 (gene) Melon (IVF77) v1

Overview


Name	IVF0014700
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	PMD domain-containing protein
Location	chr04: 15783168 .. 15783593 (+)
RNA-Seq Expression	IVF0014700
Synteny	IVF0014700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTATTTACAGAACTTGGAATCAAGGATGATTTGAAGGATGAAACGTATTTAGCTGCCTTCTTATCTTGCTGGTTGTGCCTTTTCGTATTTTCTCAGAAAGGATCGTTTCTTCGTCCTGGAGTATTTAGGGCTGCAAGCCTAATGGCCGCTGGCACTATTTATAGTCTTGCAGTTCCAGTTTTGGCGAACATATACCATGGGCTAGGTTTGATAACCAAAGCCTCCAATCTGATAGGACGCATGAACTTTCACTTTCCCATGCATTACGTCCATGGATGGTTAGCCCATTATTTTGGCACACATTATCCACTTCCCACAGAAGTTCGAGGTCCGAAGATGACTAAATTTTCAGGCGAAGGTGGGTCTATTTATTTTGGCAAATATGAGGCACGCGAATTGATCCATAATGGTGCAAGAATTTAG

mRNA sequence

ATGTTATTTACAGAACTTGGAATCAAGGATGATTTGAAGGATGAAACGTATTTAGCTGCCTTCTTATCTTGCTGGTTGTGCCTTTTCGTATTTTCTCAGAAAGGATCGTTTCTTCGTCCTGGAGTATTTAGGGCTGCAAGCCTAATGGCCGCTGGCACTATTTATAGTCTTGCAGTTCCAGTTTTGGCGAACATATACCATGGGCTAGGTTTGATAACCAAAGCCTCCAATCTGATAGGACGCATGAACTTTCACTTTCCCATGCATTACGTCCATGGATGGTTAGCCCATTATTTTGGCACACATTATCCACTTCCCACAGAAGTTCGAGGTCCGAAGATGACTAAATTTTCAGGCGAAGGTGGGTCTATTTATTTTGGCAAATATGAGGCACGCGAATTGATCCATAATGGTGCAAGAATTTAG

Coding sequence (CDS)

ATGTTATTTACAGAACTTGGAATCAAGGATGATTTGAAGGATGAAACGTATTTAGCTGCCTTCTTATCTTGCTGGTTGTGCCTTTTCGTATTTTCTCAGAAAGGATCGTTTCTTCGTCCTGGAGTATTTAGGGCTGCAAGCCTAATGGCCGCTGGCACTATTTATAGTCTTGCAGTTCCAGTTTTGGCGAACATATACCATGGGCTAGGTTTGATAACCAAAGCCTCCAATCTGATAGGACGCATGAACTTTCACTTTCCCATGCATTACGTCCATGGATGGTTAGCCCATTATTTTGGCACACATTATCCACTTCCCACAGAAGTTCGAGGTCCGAAGATGACTAAATTTTCAGGCGAAGGTGGGTCTATTTATTTTGGCAAATATGAGGCACGCGAATTGATCCATAATGGTGCAAGAATTTAG

Protein sequence

MLFTELGIKDDLKDETYLAAFLSCWLCLFVFSQKGSFLRPGVFRAASLMAAGTIYSLAVPVLANIYHGLGLITKASNLIGRMNFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTKFSGEGGSIYFGKYEARELIHNGARI

Homology

[Close]

BLAST of IVF0014700 vs. ExPASy TrEMBL
Match: A0A5A7SHN8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1204G00400 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.2e-71
Identity = 133/141 (94.33%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 1   MLFTELGIKDDLKDETYLAAFLSCWLCLFVFSQKGSFLRPGVFRAASLMAAGTIYSLAVP 60
           MLF ELGIKDDLKDETYLAAFLSCWLCLF+F QKGSFLRPGVFRAASLMAA TIYSLAVP
Sbjct: 272 MLFAELGIKDDLKDETYLAAFLSCWLCLFIFPQKGSFLRPGVFRAASLMAACTIYSLAVP 331

Query: 61  VLANIYHGLGLITKASNLIGRMNFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTKFSGE 120
           VLANIYHGLGLITKASN IGRM+FHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMT FSGE
Sbjct: 332 VLANIYHGLGLITKASNPIGRMDFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTNFSGE 391

Query: 121 GGSIYFGKYEARELIHNGARI 142
           GGSIYFG+YEARELIHNGARI
Sbjct: 392 GGSIYFGEYEARELIHNGARI 412

[Close]

BLAST of IVF0014700 vs. ExPASy TrEMBL
Match: A0A5A7VHW8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00370 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 2.7e-71
Identity = 132/141 (93.62%), Postives = 135/141 (95.74%), Query Frame = 0


Query: 1   MLFTELGIKDDLKDETYLAAFLSCWLCLFVFSQKGSFLRPGVFRAASLMAAGTIYSLAVP 60
           MLF ELGIKDDLKDETYLAAFLSCWLCLFVF QKGSFLRPGVFRAASLM AGTIYSLAVP
Sbjct: 300 MLFAELGIKDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRAASLMTAGTIYSLAVP 359

Query: 61  VLANIYHGLGLITKASNLIGRMNFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTKFSGE 120
           VLANIYHGLGLITKASN  GRM+FHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMT FSGE
Sbjct: 360 VLANIYHGLGLITKASNPTGRMDFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTNFSGE 419

Query: 121 GGSIYFGKYEARELIHNGARI 142
           GGSIYFG+YEAR+LIHNGARI
Sbjct: 420 GGSIYFGEYEARKLIHNGARI 440

[Close]

BLAST of IVF0014700 vs. ExPASy TrEMBL
Match: A0A5A7TZZ9 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2963G00230 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 5.9e-71
Identity = 133/141 (94.33%), Postives = 135/141 (95.74%), Query Frame = 0


Query: 1   MLFTELGIKDDLKDETYLAAFLSCWLCLFVFSQKGSFLRPGVFRAASLMAAGTIYSLAVP 60
           MLF ELGIKDDLKDETYLAAFLSCWLCLFVF QKGSFLRPGVFRAASLMAA TIYSLAVP
Sbjct: 225 MLFAELGIKDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRAASLMAADTIYSLAVP 284

Query: 61  VLANIYHGLGLITKASNLIGRMNFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTKFSGE 120
           VLANIYHGLGLITKASN IGRM+FHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMT FSGE
Sbjct: 285 VLANIYHGLGLITKASNPIGRMDFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTNFSGE 344

Query: 121 GGSIYFGKYEARELIHNGARI 142
           GGSIYFG+YEARELIHN ARI
Sbjct: 345 GGSIYFGEYEARELIHNCARI 365

[Close]

BLAST of IVF0014700 vs. ExPASy TrEMBL
Match: A0A5D3C543 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold157G00620 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 5.9e-71
Identity = 133/141 (94.33%), Postives = 135/141 (95.74%), Query Frame = 0


Query: 1   MLFTELGIKDDLKDETYLAAFLSCWLCLFVFSQKGSFLRPGVFRAASLMAAGTIYSLAVP 60
           MLF ELGIKDDLKDETYLAAFLSCWLCLFVF QKGSFLRPGVFRAASLMAA TIYSLAVP
Sbjct: 255 MLFAELGIKDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRAASLMAADTIYSLAVP 314

Query: 61  VLANIYHGLGLITKASNLIGRMNFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTKFSGE 120
           VLANIYHGLGLITKASN IGRM+FHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMT FSGE
Sbjct: 315 VLANIYHGLGLITKASNPIGRMDFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTNFSGE 374

Query: 121 GGSIYFGKYEARELIHNGARI 142
           GGSIYFG+YEARELIHN ARI
Sbjct: 375 GGSIYFGEYEARELIHNCARI 395

[Close]

BLAST of IVF0014700 vs. ExPASy TrEMBL
Match: A0A5D3DCE5 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18270G00010 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 7.7e-71
Identity = 132/141 (93.62%), Postives = 135/141 (95.74%), Query Frame = 0


Query: 1   MLFTELGIKDDLKDETYLAAFLSCWLCLFVFSQKGSFLRPGVFRAASLMAAGTIYSLAVP 60
           MLF ELGI+DDLKDETYLAAFLSCWLCLFVF QKGSFLRPGVFR ASLMAAGTIYSLAVP
Sbjct: 267 MLFAELGIRDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRVASLMAAGTIYSLAVP 326

Query: 61  VLANIYHGLGLITKASNLIGRMNFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTKFSGE 120
           VLANIYHGLGLITKASN IGRM+FHFPMHYVHGWLA+YFGTHYPLPTEVR PKMT FSGE
Sbjct: 327 VLANIYHGLGLITKASNPIGRMDFHFPMHYVHGWLAYYFGTHYPLPTEVRRPKMTNFSGE 386

Query: 121 GGSIYFGKYEARELIHNGARI 142
           GGSIYFGKYEARELIHNGARI
Sbjct: 387 GGSIYFGKYEARELIHNGARI 407

[Close]

BLAST of IVF0014700 vs. NCBI nr
Match: TYK20969.1 (hypothetical protein E5676_scaffold18270G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 275 bits (704), Expect = 2.28e-89
Identity = 132/141 (93.62%), Postives = 135/141 (95.74%), Query Frame = 0


Query: 1   MLFTELGIKDDLKDETYLAAFLSCWLCLFVFSQKGSFLRPGVFRAASLMAAGTIYSLAVP 60
           MLF ELGI+DDLKDETYLAAFLSCWLCLFVF QKGSFLRPGVFR ASLMAAGTIYSLAVP
Sbjct: 267 MLFAELGIRDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRVASLMAAGTIYSLAVP 326

Query: 61  VLANIYHGLGLITKASNLIGRMNFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTKFSGE 120
           VLANIYHGLGLITKASN IGRM+FHFPMHYVHGWLA+YFGTHYPLPTEVR PKMT FSGE
Sbjct: 327 VLANIYHGLGLITKASNPIGRMDFHFPMHYVHGWLAYYFGTHYPLPTEVRRPKMTNFSGE 386

Query: 121 GGSIYFGKYEARELIHNGARI 141
           GGSIYFGKYEARELIHNGARI
Sbjct: 387 GGSIYFGKYEARELIHNGARI 407

[Close]

BLAST of IVF0014700 vs. NCBI nr
Match: KAA0031751.1 (hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 275 bits (702), Expect = 1.81e-86
Identity = 131/141 (92.91%), Postives = 134/141 (95.04%), Query Frame = 0


Query: 1   MLFTELGIKDDLKDETYLAAFLSCWLCLFVFSQKGSFLRPGVFRAASLMAAGTIYSLAVP 60
           MLF ELGI+DDLKDETYLAAFLSCWLCLFVF QKGSFLRPGVFR  SLMAAGTIYSLAVP
Sbjct: 1   MLFAELGIRDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRVVSLMAAGTIYSLAVP 60

Query: 61  VLANIYHGLGLITKASNLIGRMNFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTKFSGE 120
           VLANIYHGLGLITKASN IGRM+FHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMT FSGE
Sbjct: 61  VLANIYHGLGLITKASNPIGRMDFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTNFSGE 120

Query: 121 GGSIYFGKYEARELIHNGARI 141
           G SIYFG+YEARELIHNGARI
Sbjct: 121 GESIYFGEYEARELIHNGARI 141

[Close]

BLAST of IVF0014700 vs. NCBI nr
Match: KAA0057575.1 (hypothetical protein E6C27_scaffold497G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 270 bits (691), Expect = 2.02e-86
Identity = 129/141 (91.49%), Postives = 132/141 (93.62%), Query Frame = 0


Query: 1   MLFTELGIKDDLKDETYLAAFLSCWLCLFVFSQKGSFLRPGVFRAASLMAAGTIYSLAVP 60
           MLF ELGI+DDLKDETYLAAFLSCWLCLFVF +KGSFLRP VFR ASLM AGTIYSLAVP
Sbjct: 130 MLFAELGIRDDLKDETYLAAFLSCWLCLFVFPKKGSFLRPEVFRVASLMVAGTIYSLAVP 189

Query: 61  VLANIYHGLGLITKASNLIGRMNFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTKFSGE 120
           VLANIYHGLGLITKASN IGRM+FHFPMHYVHGWLAHYFGTHYPLP EVRGPKMT FSGE
Sbjct: 190 VLANIYHGLGLITKASNPIGRMDFHFPMHYVHGWLAHYFGTHYPLPREVRGPKMTNFSGE 249

Query: 121 GGSIYFGKYEARELIHNGARI 141
           GGSIYFGKYEA ELIHNGARI
Sbjct: 250 GGSIYFGKYEAHELIHNGARI 270

[Close]

BLAST of IVF0014700 vs. NCBI nr
Match: KAA0047546.1 (hypothetical protein E6C27_scaffold2963G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 276 bits (705), Expect = 6.55e-86
Identity = 133/141 (94.33%), Postives = 135/141 (95.74%), Query Frame = 0


Query: 1   MLFTELGIKDDLKDETYLAAFLSCWLCLFVFSQKGSFLRPGVFRAASLMAAGTIYSLAVP 60
           MLF ELGIKDDLKDETYLAAFLSCWLCLFVF QKGSFLRPGVFRAASLMAA TIYSLAVP
Sbjct: 225 MLFAELGIKDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRAASLMAADTIYSLAVP 284

Query: 61  VLANIYHGLGLITKASNLIGRMNFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTKFSGE 120
           VLANIYHGLGLITKASN IGRM+FHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMT FSGE
Sbjct: 285 VLANIYHGLGLITKASNPIGRMDFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTNFSGE 344

Query: 121 GGSIYFGKYEARELIHNGARI 141
           GGSIYFG+YEARELIHN ARI
Sbjct: 345 GGSIYFGEYEARELIHNCARI 365

[Close]

BLAST of IVF0014700 vs. NCBI nr
Match: TYK06278.1 (hypothetical protein E5676_scaffold157G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 276 bits (705), Expect = 1.17e-85
Identity = 133/141 (94.33%), Postives = 135/141 (95.74%), Query Frame = 0


Query: 1   MLFTELGIKDDLKDETYLAAFLSCWLCLFVFSQKGSFLRPGVFRAASLMAAGTIYSLAVP 60
           MLF ELGIKDDLKDETYLAAFLSCWLCLFVF QKGSFLRPGVFRAASLMAA TIYSLAVP
Sbjct: 255 MLFAELGIKDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRAASLMAADTIYSLAVP 314

Query: 61  VLANIYHGLGLITKASNLIGRMNFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTKFSGE 120
           VLANIYHGLGLITKASN IGRM+FHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMT FSGE
Sbjct: 315 VLANIYHGLGLITKASNPIGRMDFHFPMHYVHGWLAHYFGTHYPLPTEVRGPKMTNFSGE 374

Query: 121 GGSIYFGKYEARELIHNGARI 141
           GGSIYFG+YEARELIHN ARI
Sbjct: 375 GGSIYFGEYEARELIHNCARI 395

The following BLAST results are available for this feature:

BLAST of IVF0014700 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0014700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SHN8	1.2e-71	94.33	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7VHW8	2.7e-71	93.62	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7TZZ9	5.9e-71	94.33	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3C543	5.9e-71	94.33	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5D3DCE5	7.7e-71	93.62	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of IVF0014700 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK20969.1	2.28e-89	93.62	hypothetical protein E5676_scaffold18270G00010 [Cucumis melo var. makuwa]	[more]
KAA0031751.1	1.81e-86	92.91	hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa]	[more]
KAA0057575.1	2.02e-86	91.49	hypothetical protein E6C27_scaffold497G00470 [Cucumis melo var. makuwa]	[more]
KAA0047546.1	6.55e-86	94.33	hypothetical protein E6C27_scaffold2963G00230 [Cucumis melo var. makuwa]	[more]
TYK06278.1	1.17e-85	94.33	hypothetical protein E5676_scaffold157G00620 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0014700 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019557	Aminotransferase-like, plant mobile domain	PFAM	PF10536	PMD	coord: 14..105 e-value: 4.9E-11 score: 42.4
None	No IPR available	PANTHER	PTHR36607:SF20	1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4	coord: 12..140
None	No IPR available	PANTHER	PTHR36607	1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4	coord: 12..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0014700.1	IVF0014700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane