IVF0013813 (gene) Melon (IVF77) v1

Overview
NameIVF0013813
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon gag protein
Locationchr04: 19938238 .. 19939482 (-)
RNA-Seq ExpressionIVF0013813
SyntenyIVF0013813
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTGCAGCCGAGAGGATCATCATCGTCATCTTCTCACATGCGTTGGAGTCGAGAGGATGATCATCTTCATCTTCTCACATGCGTTGCAATTGAGAGAATCTTCATCTTCATCTTCTCACATGTGTTGCAGCCGAGAAGATCTTTATCTTCATCTTCTCACATGTATTGCAACCGAGAGGATCTTTATCTTCATCTTCTCACATGTATTGCAACCGAGAGGATCTTTATCTTCATCTTCTCACATGTATTGCAACCGAGAGGATCTTTATCTTCATCTTCTCACATGCGTTGCAGCTGAGAGGATCTTTATCTTCATCTTCTCACATGTGTTGCAGCCAAGAGGATCATCCTCTTCTTTATCTTCATTAGAATCATCTTCATCTTCATCTTCATCTTCAATACGGTTTAAGCTGATAGAATCATCTTCATCTTCATCTTCATCTTCAATGCGGCGTAGTAGAGACCATCATCATCTCCATCTTCAGTGCGGCGCAGTAGAGACGATCATCATCTCCATCTTCAGTGCGGCGCAGTAGAGACGATCATCATCTCCATCTTCAGTGCGGCGCAGTAGAGACGATCATCATCTCCATCTTCAGTGCGGCGCAGTAGAGACGATCATCATCTCCATCTTCAGTGCGGCGCAGTAGAGACGATCATCATCTCCATCTTCAGTGCGGCGTAGAGACGATCATCATCTCCATTTTCAATGCGGCGCATCAGAGACAATCATCATCTCCATTTTCAATGCGGCGCATCAGAGACAATCATCATCTCCATCTTCAGTGCGGCGAGTCAATAGAATCATCATCATCCCATTCTTCAATGCAGCATGGTTGATAGAATCATCATCTCCATCTTCAATGCAGCACAACCGATAGAATCATCTCCATCTTCAATACGGCACAATCGTAGAATCATCTCCATCTTCAATGTGACGCAGCCGAAACGATCTCCATCTTCAATGCGACGCAATCGAGACGATCATCATGTTCATCTTCAATGCGACGCAATCGAGACGATCATCATGTTCATCTTCAATGCGACGTAATCGAGACGATCATCATGTTCATCTTCAATGCGACGTAATCGAGACGATCATCATGTTCATCTTCAATGCGACGCAATCGAGACGATCATCATCTTCATCTTCAATGCGACGCAATCGAGACGATCATCATCTCCATCTTCAATGCGACGCAATCGAGACGATCATCATTTTCATCTTCAATGTGGCGTAG

mRNA sequence

ATGTGTTGCAGCCGAGAGGATCATCATCGTCATCTTCTCACATGCGTTGGAGTCGAGAGGATGATCATCTTCATCTTCTCACATGCGTTGCAATTGAGAGAATCTTCATCTTCATCTTCTCACATGTGTTGCAGCCGAGAAGATCTTTATCTTCATCTTCTCACATGTATTGCAACCGAGAGGATCTTTATCTTCATCTTCTCACATGTATTGCAACCGAGAGGATCTTTATCTTCATCTTCTCACATGTATTGCAACCGAGAGGATCTTTATCTTCATCTTCTCACATGCGTTGCAGCTGAGAGGATCTTTATCTTCATCTTCTCACATGTGTTGCAGCCAAGAGGATCATCCTCTTCTTTATCTTCATTAGAATCATCTTCATCTTCATCTTCATCTTCAATACGGTTTAAGCTGATAGAATCATCTTCATCTTCATCTTCATCTTCAATGCGGCGTAGTAGAGACCATCATCATCTCCATCTTCAGTGCGGCGCAGTAGAGACGATCATCATCTCCATCTTCAGTGCGGCGCAAGACGATCATCATCTCCATCTTCAGTGCGGCGCAGTAGAGACGATCATCATCTCCATCTTCAGTGCGGCGCACCGAAACGATCTCCATCTTCAATGCGACGCAATCGAGACGATCATCATGTTCATCTTCAATGCGACGCAATCGAGACGATCATCATGTTCATCTTCAATGCGACGTAATCGAGACGATCATCATGTTCATCTTCAATGCGACGTAATCGAGACGATCATCATGTTCATCTTCAATGCGACGCAATCGAGACGATCATCATCTTCATCTTCAATGCGACGCAATCGAGACGATCATCATCTCCATCTTCAATGCGACGCAATCGAGACGATCATCATTTTCATCTTCAATGTGGCGTAG

Coding sequence (CDS)

ATGTGTTGCAGCCGAGAGGATCATCATCGTCATCTTCTCACATGCGTTGGAGTCGAGAGGATGATCATCTTCATCTTCTCACATGCGTTGCAATTGAGAGAATCTTCATCTTCATCTTCTCACATGTGTTGCAGCCGAGAAGATCTTTATCTTCATCTTCTCACATGTATTGCAACCGAGAGGATCTTTATCTTCATCTTCTCACATGTATTGCAACCGAGAGGATCTTTATCTTCATCTTCTCACATGTATTGCAACCGAGAGGATCTTTATCTTCATCTTCTCACATGCGTTGCAGCTGAGAGGATCTTTATCTTCATCTTCTCACATGTGTTGCAGCCAAGAGGATCATCCTCTTCTTTATCTTCATTAGAATCATCTTCATCTTCATCTTCATCTTCAATACGGTTTAAGCTGATAGAATCATCTTCATCTTCATCTTCATCTTCAATGCGGCGTAGTAGAGACCATCATCATCTCCATCTTCAGTGCGGCGCAGTAGAGACGATCATCATCTCCATCTTCAGTGCGGCGCAAGACGATCATCATCTCCATCTTCAGTGCGGCGCAGTAGAGACGATCATCATCTCCATCTTCAGTGCGGCGCACCGAAACGATCTCCATCTTCAATGCGACGCAATCGAGACGATCATCATGTTCATCTTCAATGCGACGCAATCGAGACGATCATCATGTTCATCTTCAATGCGACGTAATCGAGACGATCATCATGTTCATCTTCAATGCGACGTAATCGAGACGATCATCATGTTCATCTTCAATGCGACGCAATCGAGACGATCATCATCTTCATCTTCAATGCGACGCAATCGAGACGATCATCATCTCCATCTTCAATGCGACGCAATCGAGACGATCATCATTTTCATCTTCAATGTGGCGTAG

Protein sequence

MCCSREDHHRHLLTCVGVERMIIFIFSHALQLRESSSSSSHMCCSREDLYLHLLTCIATERIFIFIFSHVLQPRGSLSSSSHMYCNREDLYLHLLTCVAAERIFIFIFSHVLQPRGSSSSLSSLESSSSSSSSSIRFKLIESSSSSSSSSMRRSRDHHHLHLQCGAVETIIISIFSAAQDDHHLHLQCGAVETIIISIFSAAHRNDLHLQCDAIETIIMFIFNATQSRRSSCSSSMRRNRDDHHVHLQCDVIETIIMFIFNATQSRRSSSSSSMRRNRDDHHLHLQCDAIETIIIFIFNVA
Homology
BLAST of IVF0013813 vs. ExPASy TrEMBL
Match: A0A5A7TBX4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold121G00100 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 5.3e-69
Identity = 172/310 (55.48%), Postives = 203/310 (65.48%), Query Frame = 0

Query: 1   MCCSREDHHRHLLTCVGVERMIIFIFSHALQLRESSSSSSHMCCSREDLYLHLLTCIATE 60
           +CC +EDHH HLLTCV  +R+IIFIFSH LQ R SSSSSSHMCCSRED +LHLLTC+A E
Sbjct: 287 ICCKQEDHHLHLLTCVADKRIIIFIFSHVLQTRGSSSSSSHMCCSREDHHLHLLTCVAVE 346

Query: 61  RIFIFIFSHVLQPRGSLSSSSHMYCNREDLYLHLLTCVAAERIFIFIFSHVLQPRGSSSS 120
           +I IFIFSHVLQ RGS SSSSHM C+ +D YLHLLTC+A ERI  F FSHVLQPRGSSSS
Sbjct: 347 KIIIFIFSHVLQSRGSSSSSSHMCCSCKDHYLHLLTCIAVERIINFTFSHVLQPRGSSSS 406

Query: 121 LSSLESSSSSSSSSIRFKLIESSSSSSSSSMRRSRDHHHLHL-QCGAVETIIISIFS-AA 180
            S +  S       +   ++          M RS++  HLHL  C A + III IFS   
Sbjct: 407 SSYMCCSQEDHHLHLLTCVVVERIIIFIFFMSRSQEDFHLHLFTCIATKRIIIFIFSHVL 466

Query: 181 QDDHHLHLQCGAVETIIISIFSAAHRNDLHLQCDAIETIIMFIFNATQSRRSSCSSS-MR 240
           Q          A ETII  IF+A +  D+    +A E II+FIFNA Q R+ S SSS M 
Sbjct: 467 QSRGSSSSSSIATETIISFIFNATYSRDV----NAAEIIIIFIFNAVQQRQLSYSSSHMC 526

Query: 241 RNRDDH-HVHLQCDVIETIIMFIFNATQSRRSSSSSSMRRNRDDHHLHLQCDAI------ 300
            +R+DH H+HLQC              + RRSSSSSSMR +R+DHHLHLQCDA+      
Sbjct: 527 CSREDHLHLHLQC-------------REQRRSSSSSSMRHSRNDHHLHLQCDAVEAFGAA 579

BLAST of IVF0013813 vs. ExPASy TrEMBL
Match: A0A5A7U1J1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001320 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 6.3e-54
Identity = 146/313 (46.65%), Postives = 170/313 (54.31%), Query Frame = 0

Query: 14  TCVGVERMIIFIFSHALQLRESSSSSSHMCCS------------REDLYLHLLTCIATER 73
           T VG   + IFIF+H LQ R SSSSSSH+CCS            RED +LHL TC+A ER
Sbjct: 45  TEVGRIIIFIFIFAHVLQPRGSSSSSSHICCSRENHHLHFSYVFREDHHLHLFTCVAVER 104

Query: 74  IFIFIFSHVLQPRGSLSSSSHMYCNREDLYLHLLTCVAAERIFI--FIFSHVLQPRGSSS 133
           I IFIFSH+LQ R S  SSS+M  ++E  +L+LLTCVA E+IFI  FIFSH LQPRG  S
Sbjct: 105 IIIFIFSHMLQSRESSFSSSNMCYSQECHHLYLLTCVAVEKIFIFNFIFSHGLQPRGPYS 164

Query: 134 SLSSLESSSSSSSSSIRFKLIESSSSSSSSSMRRSRDHHHLHLQCGAVETIII------- 193
           SLSS+                            RSR+ HHLHLQ  A E I I       
Sbjct: 165 SLSSM----------------------------RSREDHHLHLQSVAAERIFIFCHMLQP 224

Query: 194 ------SIFSAAQDDHHLHLQCGAVETIIISIFSAAHRNDLHLQCDAIETIIMFIFNATQ 253
                 S    +Q+DHHL LQC           +      L LQ D  E II+FIFN  Q
Sbjct: 225 RGSSSSSSMCCSQEDHHLRLQC---------CRNGEDHLHLRLQHDTTERIILFIFNVAQ 284

Query: 254 SRRSSCSSSMRRNRDDHHVHLQCDVIETIIMFIFNATQSRRSSSSSSMRRNRDDHHLHLQ 300
            +RSS SSSM R+R+D H+HLQC   ETII+FI N                  DHHLHLQ
Sbjct: 285 QKRSSSSSSMWRSRNDRHLHLQCGAAETIIIFILNVI----------------DHHLHLQ 304

BLAST of IVF0013813 vs. ExPASy TrEMBL
Match: A0A5A7SRV7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00800 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 9.8e-39
Identity = 130/306 (42.48%), Postives = 153/306 (50.00%), Query Frame = 0

Query: 18  VERMIIFIFSHALQLRES-----------SSSSSHMCC----------SREDLYLHLLTC 77
           VER+IIF     LQLRES           SSSSS MCC          SRED  LH L C
Sbjct: 41  VERIIIFNLMR-LQLRESSSSLMCCSPRGSSSSSSMCCHLHLCLQCEHSRED--LHHLPC 100

Query: 78  IATERIFIFIFSHVLQPRGSLSSSSHMYCNREDLYLHL-LTCVAAERIFIFIFSHVLQPR 137
           +A ERIFIFIFS +LQPRGS S SS M C+++D +LH  L CVAA++IFIFIFSHV + R
Sbjct: 101 VAVERIFIFIFSLMLQPRGS-SFSSSMCCSQKDNHLHFHLQCVAAKKIFIFIFSHVFRLR 160

Query: 138 GSSSSLSSLESSSSSSSSSIRFKLIESSSSSSSSSMRRSRDHHHLHLQCGAVETIIISIF 197
           GSSSS SSL S                                                 
Sbjct: 161 GSSSSSSSLSSPIC---------------------------------------------- 220

Query: 198 SAAQDDHHLHLQCGAVETIIISIFSAAHRNDLHLQCDAIETIIMFIFNATQSRRSSCSSS 257
                                                 +E II+FIF+A Q RRSS SS 
Sbjct: 221 -------------------------------------CMERIIIFIFHAAQQRRSSSSSF 259

Query: 258 MRRNRDDHHVHLQCDVIETIIMFIFNATQSRRSSSSSSMRRNRDDHHLHLQCDAIETIII 302
           +R +RD H +HL C   ET+I+FIF+A Q RRSSSSS MRR+RD H LHL C A ET+I+
Sbjct: 281 LRCSRDGHRLHLSCGAAETVIVFIFHAAQQRRSSSSSFMRRSRDGHRLHLPCGAAETVIV 259

BLAST of IVF0013813 vs. ExPASy TrEMBL
Match: A0A5D3BVC5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00860 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 8.3e-38
Identity = 114/216 (52.78%), Postives = 126/216 (58.33%), Query Frame = 0

Query: 1   MCCSREDHHRHLLTCVGVERMIIFIFSHALQLRESSSSSSH------------------- 60
           +CCSREDHH HLLTCV  ER IIFIFSH LQ R SSSSS H                   
Sbjct: 558 ICCSREDHHLHLLTCVAAERFIIFIFSHVLQFRGSSSSSFHICYSRENLHLNLFTYSKGS 617

Query: 61  ------MCCSREDL---------YLHLLTCIATERIFIFIFSHVLQPRGSLSSSSHMYCN 120
                 MCCS++DL         +LHLLTC A +RI IFIF ++LQ RGSLSSSSH+YC+
Sbjct: 618 PSSSSPMCCSQKDLHLRFSQEDHHLHLLTCAAAKRIIIFIF-NLLQQRGSLSSSSHIYCS 677

Query: 121 REDLYL--HLLTCVAAER--IFIFIFSHVLQPRGSSSSLSSLESSSSSSSSSIRFKLIES 176
           REDL+L  HLLTCV+AE+  IFIFIFSHVLQPRG                         S
Sbjct: 678 REDLHLHFHLLTCVSAEKIIIFIFIFSHVLQPRG-------------------------S 737

BLAST of IVF0013813 vs. ExPASy TrEMBL
Match: A0A5D3DRX7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00420 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.6e-33
Identity = 119/297 (40.07%), Postives = 150/297 (50.51%), Query Frame = 0

Query: 14  TCVGVERMIIFIFSHALQLRESSSSSSHMCCSREDLYLHLLTCIATERIFIFIFSHVLQP 73
           T VG   + IFIF+H LQ R SSSSSSH+                 ERI  FIFSHVLQ 
Sbjct: 45  TEVGRIIIFIFIFAHVLQPRGSSSSSSHI----------------FERIITFIFSHVLQS 104

Query: 74  RGSLSSSSHMYCNREDLYLHLLTCVAAE---RIFIFIFSHVLQPR-------GSSSSLSS 133
           R S SSSSH+ C+RE+ + HLLTCV A+    IFIFIF+ ++  R        +   +  
Sbjct: 105 RESSSSSSHICCSRENHHFHLLTCVTAKTKRTIFIFIFNAIVTERIIFIFLFNTIIIIFI 164

Query: 134 LESSSSSSSSSIRFKLIESSSSSSSSSMRRSRDHHHLHLQCGAVETIIISIFSAAQDDHH 193
             + ++  +    FK++    SSSS+      DHH                       HH
Sbjct: 165 FNTIATERTIIFIFKVLLQRGSSSSAICCSQEDHH-----------------------HH 224

Query: 194 LHLQCGAVETIIISIFSAAHRNDLHLQCDAIETII-MFIFNATQSRRSSCSSSMRRNRDD 253
           LHLQC A + III +F+            A E II +F+FN TQ R SS SSSM R+R+D
Sbjct: 225 LHLQCVAAKKIIIFVFNVV----------ATERIIFIFVFNMTQPRGSSSSSSMWRSRND 276

Query: 254 HHVHLQCDVIETIIMFIFNATQSRRSSSSSSMRRNRDDHHLHLQCDAIETIIIFIFN 300
            H+HLQC   ETII+ I N                  DHHLHLQCDA E ++IF FN
Sbjct: 285 RHLHLQCGAAETIIIIILNVI----------------DHHLHLQCDAAEAVVIFNFN 276

BLAST of IVF0013813 vs. NCBI nr
Match: KAA0039121.1 (hypothetical protein E6C27_scaffold121G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 286 bits (731), Expect = 1.91e-88
Identity = 178/337 (52.82%), Postives = 206/337 (61.13%), Query Frame = 0

Query: 1   MCCSREDHHRHLLTCVGVERMIIFIFSHALQLRESSSSSSHMCCSREDLYLHLLTCIATE 60
           +CC +EDHH HLLTCV  +R+IIFIFSH LQ R SSSSSSHMCCSRED +LHLLTC+A E
Sbjct: 287 ICCKQEDHHLHLLTCVADKRIIIFIFSHVLQTRGSSSSSSHMCCSREDHHLHLLTCVAVE 346

Query: 61  RIFIFIFSHVLQPRGSLSSSSHMYCNREDLYLHLLTCVAAERIFIFIFSHVLQPRGSSSS 120
           +I IFIFSHVLQ RGS SSSSHM C+ +D YLHLLTC+A ERI  F FSHVLQPRGSSSS
Sbjct: 347 KIIIFIFSHVLQSRGSSSSSSHMCCSCKDHYLHLLTCIAVERIINFTFSHVLQPRGSSSS 406

Query: 121 LSSLESSSSSSSSSIRFKLIESSSSSSSSSMRRSRDHHHLHL-QCGAVETIIISIF--SA 180
                                      SS M  S++ HHLHL  C  VE III IF  S 
Sbjct: 407 ---------------------------SSYMCCSQEDHHLHLLTCVVVERIIIFIFFMSR 466

Query: 181 AQDDHHLHL--------------------------QCGAVETIIISIFSAAHRNDLHLQC 240
           +Q+D HLHL                             A ETII  IF+A +  D++   
Sbjct: 467 SQEDFHLHLFTCIATKRIIIFIFSHVLQSRGSSSSSSIATETIISFIFNATYSRDVN--- 526

Query: 241 DAIETIIMFIFNATQSRRSSCSSS-MRRNRDDH-HVHLQCDVIETIIMFIFNATQSRRSS 300
            A E II+FIFNA Q R+ S SSS M  +R+DH H+HLQC              + RRSS
Sbjct: 527 -AAEIIIIFIFNAVQQRQLSYSSSHMCCSREDHLHLHLQC-------------REQRRSS 579

BLAST of IVF0013813 vs. NCBI nr
Match: KAA0047505.1 (hypothetical protein E6C27_scaffold498G001320 [Cucumis melo var. makuwa])

HSP 1 Score: 224 bits (570), Expect = 1.81e-67
Identity = 146/315 (46.35%), Postives = 170/315 (53.97%), Query Frame = 0

Query: 14  TCVGVERMIIFIFSHALQLRESSSSSSHMCCSRE------------DLYLHLLTCIATER 73
           T VG   + IFIF+H LQ R SSSSSSH+CCSRE            D +LHL TC+A ER
Sbjct: 45  TEVGRIIIFIFIFAHVLQPRGSSSSSSHICCSRENHHLHFSYVFREDHHLHLFTCVAVER 104

Query: 74  IFIFIFSHVLQPRGSLSSSSHMYCNREDLYLHLLTCVAAERIFIF--IFSHVLQPRGSSS 133
           I IFIFSH+LQ R S  SSS+M  ++E  +L+LLTCVA E+IFIF  IFSH LQPRG  S
Sbjct: 105 IIIFIFSHMLQSRESSFSSSNMCYSQECHHLYLLTCVAVEKIFIFNFIFSHGLQPRGPYS 164

Query: 134 SLSSLESSSSSSSSSIRFKLIESSSSSSSSSMRRSRDHHHLHLQCGAVETIII------- 193
           SLSS+                            RSR+ HHLHLQ  A E I I       
Sbjct: 165 SLSSM----------------------------RSREDHHLHLQSVAAERIFIFCHMLQP 224

Query: 194 ------SIFSAAQDDHHLHLQCGAVETIIISIFSAAHRNDLHLQCDAIETIIMFIFNATQ 253
                 S    +Q+DHHL LQC           +      L LQ D  E II+FIFN  Q
Sbjct: 225 RGSSSSSSMCCSQEDHHLRLQCCR---------NGEDHLHLRLQHDTTERIILFIFNVAQ 284

Query: 254 SRRSSCSSSMRRNRDDHHVHLQCDVIETIIMFIFNATQSRRSSSSSSMRRNRDDHHLHLQ 301
            +RSS SSSM R+R+D H+HLQC   ETII+FI N                  DHHLHLQ
Sbjct: 285 QKRSSSSSSMWRSRNDRHLHLQCGAAETIIIFILNVI----------------DHHLHLQ 306

BLAST of IVF0013813 vs. NCBI nr
Match: KAA0033278.1 (hypothetical protein E6C27_scaffold845G00800 [Cucumis melo var. makuwa])

HSP 1 Score: 177 bits (449), Expect = 5.83e-50
Identity = 133/312 (42.63%), Postives = 158/312 (50.64%), Query Frame = 0

Query: 13  LTCVG-VERMIIFIFSHALQLRESSSS-----------SSHMCC----------SREDLY 72
           L  +G VER+IIF     LQLRESSSS           SS MCC          SREDL 
Sbjct: 35  LNFIGTVERIIIFNLMR-LQLRESSSSLMCCSPRGSSSSSSMCCHLHLCLQCEHSREDL- 94

Query: 73  LHLLTCIATERIFIFIFSHVLQPRGSLSSSSHMYCNREDLYLHL-LTCVAAERIFIFIFS 132
            H L C+A ERIFIFIFS +LQPRGS S SS M C+++D +LH  L CVAA++IFIFIFS
Sbjct: 95  -HHLPCVAVERIFIFIFSLMLQPRGS-SFSSSMCCSQKDNHLHFHLQCVAAKKIFIFIFS 154

Query: 133 HVLQPRGSSSSLSSLESSSSSSSSSIRFKLIESSSSSSSSSMRRSRDHHHLHLQCGAVET 192
           HV + RGSSSS SSL S                                           
Sbjct: 155 HVFRLRGSSSSSSSLSS------------------------------------------- 214

Query: 193 IIISIFSAAQDDHHLHLQCGAVETIIISIFSAAHRNDLHLQCDAIETIIMFIFNATQSRR 252
                                                  + C  +E II+FIF+A Q RR
Sbjct: 215 --------------------------------------PICC--MERIIIFIFHAAQQRR 259

Query: 253 SSCSSSMRRNRDDHHVHLQCDVIETIIMFIFNATQSRRSSSSSSMRRNRDDHHLHLQCDA 301
           SS SS +R +RD H +HL C   ET+I+FIF+A Q RRSSSSS MRR+RD H LHL C A
Sbjct: 275 SSSSSFLRCSRDGHRLHLSCGAAETVIVFIFHAAQQRRSSSSSFMRRSRDGHRLHLPCGA 259

BLAST of IVF0013813 vs. NCBI nr
Match: TYK02186.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 170 bits (431), Expect = 7.32e-44
Identity = 114/216 (52.78%), Postives = 126/216 (58.33%), Query Frame = 0

Query: 1   MCCSREDHHRHLLTCVGVERMIIFIFSHALQLRESSSSSSH------------------- 60
           +CCSREDHH HLLTCV  ER IIFIFSH LQ R SSSSS H                   
Sbjct: 558 ICCSREDHHLHLLTCVAAERFIIFIFSHVLQFRGSSSSSFHICYSRENLHLNLFTYSKGS 617

Query: 61  ------MCCSREDLYL---------HLLTCIATERIFIFIFSHVLQPRGSLSSSSHMYCN 120
                 MCCS++DL+L         HLLTC A +RI IFIF+ +LQ RGSLSSSSH+YC+
Sbjct: 618 PSSSSPMCCSQKDLHLRFSQEDHHLHLLTCAAAKRIIIFIFN-LLQQRGSLSSSSHIYCS 677

Query: 121 REDLYLH--LLTCVAAERI--FIFIFSHVLQPRGSSSSLSSLESSSSSSSSSIRFKLIES 175
           REDL+LH  LLTCV+AE+I  FIFIFSHVLQPRGSSSS                      
Sbjct: 678 REDLHLHFHLLTCVSAEKIIIFIFIFSHVLQPRGSSSS---------------------- 737

BLAST of IVF0013813 vs. NCBI nr
Match: TYK26477.1 (hypothetical protein E5676_scaffold313G00420 [Cucumis melo var. makuwa])

HSP 1 Score: 158 bits (400), Expect = 2.04e-42
Identity = 110/286 (38.46%), Postives = 142/286 (49.65%), Query Frame = 0

Query: 19  ERMIIFIFSHALQLRESSSSSSHMCCSREDLYLHLLTCIA--TER-IFIFIFSHVLQPRG 78
           ER+I FIFSH LQ RESSSSSSH+CCSRE+ + HLLTC+   T+R IFIFIF+ ++  R 
Sbjct: 75  ERIITFIFSHVLQSRESSSSSSHICCSRENHHFHLLTCVTAKTKRTIFIFIFNAIVTERI 134

Query: 79  SLSSSSHMYCNREDLYLHLLTCVAAERIFIFIFSHVLQPRGSSSSLSSLESSSSSSSSSI 138
                  ++     + + +   +A ER  IFIF  +LQ RGSSSS               
Sbjct: 135 IF-----IFLFNTIIIIFIFNTIATERTIIFIFKVLLQ-RGSSSS--------------- 194

Query: 139 RFKLIESSSSSSSSSMRRSRDHHHLHLQCGAVETIIISIFSAAQDDHHLHLQCGAVETII 198
                         ++  S++ HH                      HHLHLQC A + II
Sbjct: 195 --------------AICCSQEDHH----------------------HHLHLQCVAAKKII 254

Query: 199 ISIFSAAHRNDLHLQCDAIETIIMFIFNATQSRRSSCSSSMRRNRDDHHVHLQCDVIETI 258
           I +F+      +         I +F+FN TQ R SS SSSM R+R+D H+HLQC   ETI
Sbjct: 255 IFVFNVVATERI---------IFIFVFNMTQPRGSSSSSSMWRSRNDRHLHLQCGAAETI 278

Query: 259 IMFIFNATQSRRSSSSSSMRRNRDDHHLHLQCDAIETIIIFIFNVA 301
           I+ I N                  DHHLHLQCDA E ++IF FN  
Sbjct: 315 IIIILNVI----------------DHHLHLQCDAAEAVVIFNFNAV 278

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TBX45.3e-6955.48Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U1J16.3e-5446.65Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SRV79.8e-3942.48Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BVC58.3e-3852.78Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5D3DRX71.6e-3340.07Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0039121.11.91e-8852.82hypothetical protein E6C27_scaffold121G00100 [Cucumis melo var. makuwa][more]
KAA0047505.11.81e-6746.35hypothetical protein E6C27_scaffold498G001320 [Cucumis melo var. makuwa][more]
KAA0033278.15.83e-5042.63hypothetical protein E6C27_scaffold845G00800 [Cucumis melo var. makuwa][more]
TYK02186.17.32e-4452.78retrotransposon gag protein [Cucumis melo var. makuwa][more]
TYK26477.12.04e-4238.46hypothetical protein E5676_scaffold313G00420 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0013813.1IVF0013813.1mRNA