IVF0013101 (gene) Melon (IVF77) v1

Overview
NameIVF0013101
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPhosphopantothenoylcysteine decarboxylase subunit VHS3-like
Locationchr02: 12876208 .. 12876429 (+)
RNA-Seq ExpressionIVF0013101
SyntenyIVF0013101
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATACACCAACATATCGGCTGCAACACATGGAAGAGGATGATCCTATCAACTTCAACCTCATTAAAGATGAAGATGATGATTCTGTCGACTGCGACTGCATTGAAGATGAAGATGATGATCCTATCGATTATGACCGCTTTGAAGATGATGATGATGATTGTCTGGGCCGCGCCACCTTGAAGATGGAGATGATGATCGTCTCGACTGTGCTGCATTGA

mRNA sequence

ATGGATACACCAACATATCGGCTGCAACACATGGAAGAGGATGATCCTATCAACTTCAACCTCATTAAAGATGAAGATGATGATTCTGTCGACTGCGACTGCATTGAAGATGAAGATGATGATCCTATCGATTATGACCGCTTTGAAGATGATGATGATGATTGTCTGGGCCGCGCCACCTTGAAGATGGAGATGATGATCGTCTCGACTGTGCTGCATTGA

Coding sequence (CDS)

ATGGATACACCAACATATCGGCTGCAACACATGGAAGAGGATGATCCTATCAACTTCAACCTCATTAAAGATGAAGATGATGATTCTGTCGACTGCGACTGCATTGAAGATGAAGATGATGATCCTATCGATTATGACCGCTTTGAAGATGATGATGATGATTGTCTGGGCCGCGCCACCTTGAAGATGGAGATGATGATCGTCTCGACTGTGCTGCATTGA

Protein sequence

MDTPTYRLQHMEEDDPINFNLIKDEDDDSVDCDCIEDEDDDPIDYDRFEDDDDDCLGRATLKMEMMIVSTVLH
Homology
BLAST of IVF0013101 vs. ExPASy TrEMBL
Match: A0A5A7U914 (Prostatic spermine-binding protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00830 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.9e-21
Identity = 57/63 (90.48%), Postives = 60/63 (95.24%), Query Frame = 0

Query: 11 MEEDDPINFNLIKDEDDDSVDCDCIEDEDDDPIDYDRFEDDDDDCLGRATLKMEMMIVST 70
          ME++DPINFNLIKDEDDDSVDCD IEDEDDDPID DRFED+DDDCLGRATLKMEMMIVST
Sbjct: 1  MEKNDPINFNLIKDEDDDSVDCDRIEDEDDDPIDCDRFEDEDDDCLGRATLKMEMMIVST 60

Query: 71 VLH 74
           LH
Sbjct: 61 ALH 63

BLAST of IVF0013101 vs. ExPASy TrEMBL
Match: A0A5A7T1P1 (Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold85G00660 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.0e-14
Identity = 48/70 (68.57%), Postives = 56/70 (80.00%), Query Frame = 0

Query: 3  TPTYRLQHMEE-----DDPINFNLIKDEDDDSVDCDCIEDEDDDPIDYDRFEDDDDDCLG 62
          TPTYR+QH++E     DDPI+FNL+KDE DDS+DCDCIEDEDDDPI   RFEDDD   LG
Sbjct: 22 TPTYRVQHLKEDDAIDDDPIDFNLVKDEADDSIDCDCIEDEDDDPISCHRFEDDDR--LG 81

Query: 63 RATLKMEMMI 68
            TLKMEM++
Sbjct: 82 CVTLKMEMLL 89

BLAST of IVF0013101 vs. ExPASy TrEMBL
Match: A0A5D3BPS5 (Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00260 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 6.1e-11
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 0

Query: 12  EEDDPINFNLIKDEDDDSVDCDCIEDEDDDPIDYDRFEDDDDDCLGRATLKMEMMIVSTV 71
           E+DD I+ N I+DED D +DC+CIEDEDDDPID D  ED+DDD LG A LK+EMMI+   
Sbjct: 41  EDDDSIDSNHIEDEDGDPIDCNCIEDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIILVA 100

Query: 72  LH 74
           LH
Sbjct: 101 LH 102

BLAST of IVF0013101 vs. ExPASy TrEMBL
Match: A0A5D3DQ88 (Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G00280 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.7e-10
Identity = 41/60 (68.33%), Postives = 50/60 (83.33%), Query Frame = 0

Query: 12  EEDDPINFNLIKDEDDDSVDCDCIEDEDDDPIDYDRFEDDDDDCLGRATLKMEMMIVSTV 71
           E+DD I+F  I+DEDDDS+DCD IED+DDDPI +DRFED+DDD LG   LKM+MMIVS +
Sbjct: 44  EDDDFIDF-YIEDEDDDSIDCDHIEDKDDDPIGWDRFEDEDDDRLGCVALKMKMMIVSVI 102

BLAST of IVF0013101 vs. ExPASy TrEMBL
Match: A0A1S3C4K1 (phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo OX=3656 GN=LOC103496781 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.7e-10
Identity = 41/60 (68.33%), Postives = 50/60 (83.33%), Query Frame = 0

Query: 12  EEDDPINFNLIKDEDDDSVDCDCIEDEDDDPIDYDRFEDDDDDCLGRATLKMEMMIVSTV 71
           E+DD I+F  I+DEDDDS+DCD IED+DDDPI +DRFED+DDD LG   LKM+MMIVS +
Sbjct: 44  EDDDFIDF-YIEDEDDDSIDCDHIEDKDDDPIGWDRFEDEDDDRLGCVALKMKMMIVSVI 102

BLAST of IVF0013101 vs. NCBI nr
Match: KAA0050091.1 (prostatic spermine-binding protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (274), Expect = 8.06e-30
Identity = 57/63 (90.48%), Postives = 60/63 (95.24%), Query Frame = 0

Query: 11 MEEDDPINFNLIKDEDDDSVDCDCIEDEDDDPIDYDRFEDDDDDCLGRATLKMEMMIVST 70
          ME++DPINFNLIKDEDDDSVDCD IEDEDDDPID DRFED+DDDCLGRATLKMEMMIVST
Sbjct: 1  MEKNDPINFNLIKDEDDDSVDCDRIEDEDDDPIDCDRFEDEDDDCLGRATLKMEMMIVST 60

Query: 71 VLH 73
           LH
Sbjct: 61 ALH 63

BLAST of IVF0013101 vs. NCBI nr
Match: KAA0037362.1 (phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa] >TYJ97544.1 phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 4.27e-20
Identity = 48/70 (68.57%), Postives = 56/70 (80.00%), Query Frame = 0

Query: 3  TPTYRLQHMEEDD-----PINFNLIKDEDDDSVDCDCIEDEDDDPIDYDRFEDDDDDCLG 62
          TPTYR+QH++EDD     PI+FNL+KDE DDS+DCDCIEDEDDDPI   RFE  DDD LG
Sbjct: 22 TPTYRVQHLKEDDAIDDDPIDFNLVKDEADDSIDCDCIEDEDDDPISCHRFE--DDDRLG 81

Query: 63 RATLKMEMMI 67
            TLKMEM++
Sbjct: 82 CVTLKMEMLL 89

BLAST of IVF0013101 vs. NCBI nr
Match: KAA0039603.1 (phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa] >TYK01703.1 phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 5.90e-16
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 0

Query: 12  EEDDPINFNLIKDEDDDSVDCDCIEDEDDDPIDYDRFEDDDDDCLGRATLKMEMMIVSTV 71
           E+DD I+ N I+DED D +DC+CIEDEDDDPID D  ED+DDD LG A LK+EMMI+   
Sbjct: 41  EDDDSIDSNHIEDEDGDPIDCNCIEDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIILVA 100

Query: 72  LH 73
           LH
Sbjct: 101 LH 102

BLAST of IVF0013101 vs. NCBI nr
Match: TYK26478.1 (glutamic acid-rich protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 1.34e-14
Identity = 43/73 (58.90%), Postives = 52/73 (71.23%), Query Frame = 0

Query: 6  YRLQHMEEDDPIN-----FNLIKDEDDDSVDCDCIEDEDDDPIDYDRFEDDDDDCLGRAT 65
          YRLQHME+DDPI+     FN I+DEDD  +D D IED+DDD ID+ R ED+DDD     T
Sbjct: 2  YRLQHMEKDDPIDDDPIEFNCIEDEDDGFIDFDHIEDKDDDSIDFIRIEDEDDDRFYYTT 61

Query: 66 LKMEMMIVSTVLH 73
          LKM+M+IVS   H
Sbjct: 62 LKMKMIIVSIAPH 74

BLAST of IVF0013101 vs. NCBI nr
Match: XP_008456992.1 (PREDICTED: phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo] >TYK25823.1 phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 4.48e-14
Identity = 41/62 (66.13%), Postives = 50/62 (80.65%), Query Frame = 0

Query: 12  EEDDPINFNLIKDEDDDSVDCDCIEDEDDDPIDYDRFEDDDDDCLGRATLKMEMMIVSTV 71
           E+DD I+F  I+DEDDDS+DCD IED+DDDPI +DRFED+DDD LG   LKM+MMIVS +
Sbjct: 44  EDDDFIDF-YIEDEDDDSIDCDHIEDKDDDPIGWDRFEDEDDDRLGCVALKMKMMIVSVI 103

Query: 72  LH 73
             
Sbjct: 104 FE 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U9142.9e-2190.48Prostatic spermine-binding protein-like OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7T1P12.0e-1468.57Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var.... [more]
A0A5D3BPS56.1e-1164.52Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var.... [more]
A0A5D3DQ886.7e-1068.33Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var.... [more]
A0A1S3C4K16.7e-1068.33phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo OX=3... [more]
Match NameE-valueIdentityDescription
KAA0050091.18.06e-3090.48prostatic spermine-binding protein-like [Cucumis melo var. makuwa][more]
KAA0037362.14.27e-2068.57phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. m... [more]
KAA0039603.15.90e-1664.52phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. m... [more]
TYK26478.11.34e-1458.90glutamic acid-rich protein-like [Cucumis melo var. makuwa][more]
XP_008456992.14.48e-1466.13PREDICTED: phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0013101.1IVF0013101.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0046872 metal ion binding