IVF0012945 (gene) Melon (IVF77) v1

Overview


Name	IVF0012945
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	protein POLYCHOME
Location	chr08: 13676306 .. 13678994 (+)
RNA-Seq Expression	IVF0012945
Synteny	IVF0012945

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTTAAGTAGCGCCCAAATTTTCCCATTTCAAATCTGCCCAAAATTTCGACTTCTCTCAAACCAGCTTCACCTTCTTCCCTCTCATTTTTCATCTCCGCTCCTCACAGATCGCCGCTCCCCACCAATCCACCGCCATTTTTTTGGAATACTCCATTCAAGCCCACTGGAATCTCGCGGTATGTATCAATTTCCATCTTCCTTTTCTCCATTTCTCCATTTCTCCATTTCTCCTTTCTTTGGACAGTGTTTATATGAAATGTAGTTTTTGGCTTTAACTGAAAGATTCTTTGTTCTTGTTACTGTAGATTTAGATTAGGGCTTCTCTTGCTTTCTTCTTCTTTGAAATGTTTGTTTTCTTGCTTCTTCCTTTTGAAGTTCCATAATGTCGGAAGCAAGGGATAGATTGGAGAGACAAGTGGATTATGCCGAGGTATTTGCTCGTCGGAGGTCGGAAGGTATATTGGACGAGCAAGAAATGGGTTCTAATTTGATAGGTACTCCGATTGCACGCGCCACTACGACGACTGCTGCTCAACAAAGGCCTACGAATCCCGGCCCTGGTGGAGGTGGTGCGAATCTGAGACGTACTTTTGGTTCTCCCATTTCTGGCGGAATTGGGCGTAATAGATTTCTTTATAGAACTCCAGTGTTGAGCCGTGAGAATCCGTCGGCTGGGAGTTCCAGGCGGAGTAGATCTCGGGGTAGGAACAGTGTGTTACCGATTTGGTACCCAAGAACCCCTCTTCGTGACATAACTGCAGTTGTGAGGGTAAATGACTAATTCCTCTCTTACTTTCATATGGTTCTGCTTAATTTTTCAAGGATTTGTTCTGTTCTGCCTACAATATTGTGGATTACTTGGATATTTGATTCATATTGTTTATAGCAAACCTATTCTCATTGTCATTGCATATGGTATATACGCCAATTCCTACCCAGTAGATATTTGTTCTCCGATACAGTATCTTTGTTTGGATTGATTCTTATTTTAATTTACTTGATCTTCGGAGAACCCCCTATTTTGATTTTCTGGTGTAGTTGTTGTGATTCTTTTTTCTGTTTTTCAGTTGGTAAGCATTTGTTTTGATTTGATTTTTGACCCAAAATGTTGTTGCTTATGTCTAATATTTTTTTTTTGTGAATCCTTAGATTGGATCACTTTCCTTTTTCTTTAAGTAAATTAATCAATAAATTTGTAGTGTTTTTAAGCTATGTACTACCTACCTGTTTGTCTGAAAAGGAGATTCTTTTGGTTTTGTAACATCCATGCCCAATGATTTCATATGAAACATCAACAGTCTGGATAATGAGAACCTGTCCACCATTAACTAAAGTTAACGTTATTCGTTTCCTTTTTTAGATTTTATATTCATTGTTTAGTTGGATTCCAATCCGTTTTTAGGCTTCATTTTCACCTGTTATTAGAACTACTTTTTGGTGGGCTCAATATGCTTCGGCTGGTTACTAGGATGCGCTGACTAGGTAGTCCAAATCAACATTTTGGGCGTTTGTCAAGCTGTGATTTGAAAGTCAATTAACATCTTGTTATCGTGACCTGTGGGGCATGTGTGCTGATTAAGCTTGTGTTGACACTTGTAAATTATCTGACCTGACGTTTCCAATGTATTAAATTAATTAATTTGTTTTGTTTGAAAAGTTTCAACGGACGAAAAAAGTATGTTTTGAGCAAGAAATATCAAATTTAATTTTTCAAGCATCTAGATGACCTTAAATTTGTTAAGACTACAGAATTCTATTTTAAGTTACTTAATTTAAGGCATCATGCATCACTCTTTCTAAGTAATACACTAAATCAAACCATTATGAGGAAAATCTTTGTGATGTATAAAAATAGAAATTTGATTTTCAAAAATGTATAAAGTAAATGTGTCGTTTTTTTTGGTGCCCTCGGTTTTTAGCATATATTATATCACGTTATAATGCATCGTGTCTTCCCTATGTCACATGTCTGTGTCTTTGTATCATTCATCTAAAATCTTTGGTACTTTTTAGGTTGATTCGCTGATAATTTTGCTGTCTATGTGAAACATTCCTCTCATCTTTTCACGTCTCTGAGGATTTCATTTGGGAATTGTCTTTTAGAAATTTCTTTGAACTATGTTCTTTCACTAATCAAAGGGAATTCTCTTTAAAGCATTGCATCTGGGCTCCTGCATATGGGCATTTGGATATTTAGTTACTGCTCCATTTCATTCAATATCACCTGTGTTTTTCCTAGAAATCTCCTTCCCTAGTTTTTCAATTGAGGCATTTGGAAGGTCATATGGTTAATTTCTAAGGAATCCTATTCCTTTAATCAGGCAATCGAAAGGACAAGAGCTCGCTTGAGAGAAAACGAAGGCCAAGGAAGTGACAGTAGTCCAGCTCCCTCGGACGAAAGAGCATTAGAGTATAGCGTCTCCGTGGCAAGTGATCATCAAGAGCCGATCATTTCTCTGCTTACCCCAAAACCAACCGTAGGAAAAGTTCCAAAGATTCTTCGTGGAATCGCAAATGAGAACACGGTAGGGGCCGAGACTCTGACTCCTCAGAAGAAGCTCTTGAACTCCATAGACAAAGTGGAGAAAGTAGTAATGGAGGAGTTACAGAAATTGAAAAGAACACCAAGTGCCAAGAAAGCAGAGAGGGAGAAAAGGGTTCGCACTTTAATGTCGTTTCGTTGA

mRNA sequence

ATGAGTTTAAGTAGCGCCCAAATTTTCCCATTTCAAATCTGCCCAAAATTTCGACTTCTCTCAAACCAGCTTCACCTTCTTCCCTCTCATTTTTCATCTCCGCTCCTCACAGATCGCCGCTCCCCACCAATCCACCGCCATTTTTTTGGAATACTCCATTCAAGCCCACTGGAATCTCGCGGTATTTCCATAATGTCGGAAGCAAGGGATAGATTGGAGAGACAAGTGGATTATGCCGAGGTATTTGCTCGTCGGAGGTCGGAAGGTATATTGGACGAGCAAGAAATGGGTTCTAATTTGATAGGTACTCCGATTGCACGCGCCACTACGACGACTGCTGCTCAACAAAGGCCTACGAATCCCGGCCCTGGTGGAGGTGGTGCGAATCTGAGACGTACTTTTGGTTCTCCCATTTCTGGCGGAATTGGGCGTAATAGATTTCTTTATAGAACTCCAGTGTTGAGCCGTGAGAATCCGTCGGCTGGGAGTTCCAGGCGGAGTAGATCTCGGGGTAGGAACAGTGTGTTACCGATTTGGTACCCAAGAACCCCTCTTCGTGACATAACTGCAGTTGTGAGGGCAATCGAAAGGACAAGAGCTCGCTTGAGAGAAAACGAAGGCCAAGGAAGTGACAGTAGTCCAGCTCCCTCGGACGAAAGAGCATTAGAGTATAGCGTCTCCGTGGCAAGTGATCATCAAGAGCCGATCATTTCTCTGCTTACCCCAAAACCAACCGTAGGAAAAGTTCCAAAGATTCTTCGTGGAATCGCAAATGAGAACACGGTAGGGGCCGAGACTCTGACTCCTCAGAAGAAGCTCTTGAACTCCATAGACAAAGTGGAGAAAGTAGTAATGGAGGAGTTACAGAAATTGAAAAGAACACCAAGTGCCAAGAAAGCAGAGAGGGAGAAAAGGGTTCGCACTTTAATGTCGTTTCGTTGA

Coding sequence (CDS)

ATGAGTTTAAGTAGCGCCCAAATTTTCCCATTTCAAATCTGCCCAAAATTTCGACTTCTCTCAAACCAGCTTCACCTTCTTCCCTCTCATTTTTCATCTCCGCTCCTCACAGATCGCCGCTCCCCACCAATCCACCGCCATTTTTTTGGAATACTCCATTCAAGCCCACTGGAATCTCGCGGTATTTCCATAATGTCGGAAGCAAGGGATAGATTGGAGAGACAAGTGGATTATGCCGAGGTATTTGCTCGTCGGAGGTCGGAAGGTATATTGGACGAGCAAGAAATGGGTTCTAATTTGATAGGTACTCCGATTGCACGCGCCACTACGACGACTGCTGCTCAACAAAGGCCTACGAATCCCGGCCCTGGTGGAGGTGGTGCGAATCTGAGACGTACTTTTGGTTCTCCCATTTCTGGCGGAATTGGGCGTAATAGATTTCTTTATAGAACTCCAGTGTTGAGCCGTGAGAATCCGTCGGCTGGGAGTTCCAGGCGGAGTAGATCTCGGGGTAGGAACAGTGTGTTACCGATTTGGTACCCAAGAACCCCTCTTCGTGACATAACTGCAGTTGTGAGGGCAATCGAAAGGACAAGAGCTCGCTTGAGAGAAAACGAAGGCCAAGGAAGTGACAGTAGTCCAGCTCCCTCGGACGAAAGAGCATTAGAGTATAGCGTCTCCGTGGCAAGTGATCATCAAGAGCCGATCATTTCTCTGCTTACCCCAAAACCAACCGTAGGAAAAGTTCCAAAGATTCTTCGTGGAATCGCAAATGAGAACACGGTAGGGGCCGAGACTCTGACTCCTCAGAAGAAGCTCTTGAACTCCATAGACAAAGTGGAGAAAGTAGTAATGGAGGAGTTACAGAAATTGAAAAGAACACCAAGTGCCAAGAAAGCAGAGAGGGAGAAAAGGGTTCGCACTTTAATGTCGTTTCGTTGA

Protein sequence

MSLSSAQIFPFQICPKFRLLSNQLHLLPSHFSSPLLTDRRSPPIHRHFFGILHSSPLESRGISIMSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTTAAQQRPTNPGPGGGGANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKPTVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREKRVRTLMSFR

Homology

[Close]

BLAST of IVF0012945 vs. ExPASy Swiss-Prot
Match: O48533 (Protein POLYCHOME OS=Arabidopsis thaliana OX=3702 GN=PYM PE=1 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 4.5e-52
Identity = 136/262 (51.91%), Postives = 163/262 (62.21%), Query Frame = 0


Query: 65  MSEARDRLERQVDYAEVFARRRSEGI-LDEQEMGSNLIGTPIARATTTTAAQQRPTNPGP 124
           M EARDR+ERQVDY   F  RRS GI LDE     NL G+P+ R  +           G 
Sbjct: 1   MPEARDRIERQVDYPAAFLNRRSHGILLDEPATQHNLFGSPVQRVPSEATGGLGSIGQGS 60

Query: 125 -GGGGANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPR 184
             G G  +R  FG   +GG  R +  +R+P   REN S G +RR R+R  NSVLP WYPR
Sbjct: 61  MTGRGGLVRGNFGIRRTGGGRRGQIQFRSP-QGRENMSLGVTRRGRARASNSVLPSWYPR 120

Query: 185 TPLRDITAVVRAIERTRARLRENEGQGSD-SSPAPSDERALEYSVSVASDHQEPIISLLT 244
           TPLRDI+AVVRAIER RAR+   EG G D  +P P     L+  V ++  H E   S++T
Sbjct: 121 TPLRDISAVVRAIERRRARM--GEGVGRDIETPTPQQLGVLDSLVPLSGAHLEHDYSMVT 180

Query: 245 PKPTVG----------KVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKL 304
           P P++G          KV +IL  I  ENT   + LTP+KKLLNSIDKVEKVVMEE+QK+
Sbjct: 181 PGPSIGFKRPWPPSTAKVHQILLDITRENTGEEDALTPEKKLLNSIDKVEKVVMEEIQKM 240

Query: 305 KRTPSAKKAEREKRVRTLMSFR 314
           K TPSAK+AEREKRVRTLMS R
Sbjct: 241 KSTPSAKRAEREKRVRTLMSMR 259

[Close]

BLAST of IVF0012945 vs. ExPASy Swiss-Prot
Match: Q9M2R1 (Protein GIGAS CELL1 OS=Arabidopsis thaliana OX=3702 GN=GIG1 PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 9.5e-34
Identity = 116/266 (43.61%), Postives = 143/266 (53.76%), Query Frame = 0


Query: 65  MSEARDRLERQVDYAEVFARRRSEGI-LDEQEMGSNLIGTPIARATTTTAAQQRPTNPGP 124
           M EARDR ER VDY+ +FA RR  GI LDE +   +LI +P+            P     
Sbjct: 1   MPEARDRTERPVDYSTIFANRRRHGILLDEPDSRLSLIESPV-----------NPDIGSI 60

Query: 125 GGGGANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRT 184
           GG G  +R  F +   G        +R P   REN    ++RR R  G   +LP WYPRT
Sbjct: 61  GGTGGLVRGNFTTWRPGNGRGGHTPFRLP-QGRENMPIVTARRGRGGG---LLPSWYPRT 120

Query: 185 PLRDITAVVRAIERTRARLRENEGQGSDSS-----PAPSDERALEYSVSVASDHQEPIIS 244
           PLRDIT +VRAIER     R   G G D       P       LE  V ++ +H+    S
Sbjct: 121 PLRDITHIVRAIER-----RRGAGTGGDDGRVIEIPTHRQVGVLESPVPLSGEHK---CS 180

Query: 245 LLTPKPTVG----------KVPKILRGIANE-NTVGAETLTPQKKLLNSIDKVEKVVMEE 304
           ++TP P+VG          KV K+L  I  E     A  +TP+KKLLNSIDKVEK+VM E
Sbjct: 181 MVTPGPSVGFKRSCPPSTAKVQKMLLDITKEIAEEEAGFITPEKKLLNSIDKVEKIVMAE 240

Query: 305 LQKLKRTPSAKKAEREKRVRTLMSFR 314
           +QKLK TP AK+ EREKRVRTLM+ R
Sbjct: 241 IQKLKSTPQAKREEREKRVRTLMTMR 243

[Close]

BLAST of IVF0012945 vs. ExPASy TrEMBL
Match: A0A0A0KY99 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G152290 PE=4 SV=1)

HSP 1 Score: 558.9 bits (1439), Expect = 1.3e-155
Identity = 298/315 (94.60%), Postives = 301/315 (95.56%), Query Frame = 0


Query: 1   MSLSSAQIFPFQICPKFRLLSNQLHLLPSHFSSPLLTDRRSPPIHRHFFGILHSSPLESR 60
           MSLSSAQIFPFQICPKFRLLSNQLHLLPSHFSSPLLTDRR PPIHRHFF    ++P +  
Sbjct: 1   MSLSSAQIFPFQICPKFRLLSNQLHLLPSHFSSPLLTDRRLPPIHRHFF--FWNTPFKPT 60

Query: 61  GI--SIMSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTTAAQQRP 120
           GI  SIMSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTT  AQQRP
Sbjct: 61  GISRSIMSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRP 120

Query: 121 TNPGPGGGGANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPI 180
           TNPGPGGGG NLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPI
Sbjct: 121 TNPGPGGGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPI 180

Query: 181 WYPRTPLRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIIS 240
           WYPRTPLRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIIS
Sbjct: 181 WYPRTPLRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIIS 240

Query: 241 LLTPKPTVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAK 300
           LLTPKPTVGKVPKILRGIANENTVGAE LTPQKKLLNSIDKVEKVVMEELQKLKRTPSAK
Sbjct: 241 LLTPKPTVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAK 300

Query: 301 KAEREKRVRTLMSFR 314
           KAEREKRVRTLMSFR
Sbjct: 301 KAEREKRVRTLMSFR 313

[Close]

BLAST of IVF0012945 vs. ExPASy TrEMBL
Match: A0A5D3BM43 (Protein POLYCHOME OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2510G00330 PE=4 SV=1)

HSP 1 Score: 469.5 bits (1207), Expect = 1.1e-128
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0


Query: 65  MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTTAAQQRPTNPGPG 124
           MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTTAAQQRPTNPGPG
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTTAAQQRPTNPGPG 60

Query: 125 GGGANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 184
           GGGANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP
Sbjct: 61  GGGANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120

Query: 185 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 244
           LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP
Sbjct: 121 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 180

Query: 245 TVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 304
           TVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK
Sbjct: 181 TVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240

Query: 305 RVRTLMSFR 314
           RVRTLMSFR
Sbjct: 241 RVRTLMSFR 249

[Close]

BLAST of IVF0012945 vs. ExPASy TrEMBL
Match: A0A1S3CDA1 (protein POLYCHOME OS=Cucumis melo OX=3656 GN=LOC103499559 PE=4 SV=1)

HSP 1 Score: 469.5 bits (1207), Expect = 1.1e-128
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0


Query: 65  MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTTAAQQRPTNPGPG 124
           MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTTAAQQRPTNPGPG
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTTAAQQRPTNPGPG 60

Query: 125 GGGANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 184
           GGGANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP
Sbjct: 61  GGGANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120

Query: 185 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 244
           LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP
Sbjct: 121 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 180

Query: 245 TVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 304
           TVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK
Sbjct: 181 TVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240

Query: 305 RVRTLMSFR 314
           RVRTLMSFR
Sbjct: 241 RVRTLMSFR 249

[Close]

BLAST of IVF0012945 vs. ExPASy TrEMBL
Match: A0A6J1HRM8 (protein POLYCHOME OS=Cucurbita maxima OX=3661 GN=LOC111466091 PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 4.3e-106
Identity = 216/254 (85.04%), Postives = 231/254 (90.94%), Query Frame = 0


Query: 65  MSEARDRLERQVDYAEVFARRRSE-GILDEQEMGSNLIGTPIARATTTTAAQQRPTNPGP 124
           MSE+RDRLERQVDYAEVFARRRSE GILDEQEM + LIGTPIARATTTT AQQRPTN GP
Sbjct: 1   MSESRDRLERQVDYAEVFARRRSEGGILDEQEMSTTLIGTPIARATTTTTAQQRPTNLGP 60

Query: 125 ----GGGGANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIW 184
               GGGGA  RR+FGSPISGGIGRNRFLYR+PVLSREN +AGSSRRSRSR R+SVLPIW
Sbjct: 61  GGGGGGGGAIPRRSFGSPISGGIGRNRFLYRSPVLSRENTAAGSSRRSRSRVRHSVLPIW 120

Query: 185 YPRTPLRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISL 244
           YPRTPLRDITAVVRAIERTRARLRENEGQGSD+SPAPSDERALE+S SV+  HQEP +SL
Sbjct: 121 YPRTPLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEFSASVSGGHQEPDVSL 180

Query: 245 LTPKPTVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKK 304
           +TPKPTVGKV KILRGIANEN   +E LTPQKKLLNSIDKVEKVV EELQKL++TPSAK+
Sbjct: 181 VTPKPTVGKVTKILRGIANENVEESEMLTPQKKLLNSIDKVEKVVREELQKLRKTPSAKR 240

Query: 305 AEREKRVRTLMSFR 314
           AEREKRVRTLMSFR
Sbjct: 241 AEREKRVRTLMSFR 254

[Close]

BLAST of IVF0012945 vs. ExPASy TrEMBL
Match: A0A6J1EBD1 (protein POLYCHOME-like OS=Cucurbita moschata OX=3662 GN=LOC111432471 PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 4.3e-106
Identity = 216/253 (85.38%), Postives = 231/253 (91.30%), Query Frame = 0


Query: 65  MSEARDRLERQVDYAEVFARRRSE-GILDEQEMGSNLIGTPIARATTTTAAQQRPTNPGP 124
           MSE+RDRLERQVDYAEVFARRRSE GILDEQEM + LIGTPIARATTTT AQQRPTN GP
Sbjct: 1   MSESRDRLERQVDYAEVFARRRSEGGILDEQEMSTTLIGTPIARATTTTTAQQRPTNLGP 60

Query: 125 ---GGGGANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWY 184
              GGGGA  RR+FGSPISGGIGRNRFLYR+PVLSREN +AGSSRRSRSR R+SVLPIWY
Sbjct: 61  GGGGGGGAIPRRSFGSPISGGIGRNRFLYRSPVLSRENTAAGSSRRSRSRVRHSVLPIWY 120

Query: 185 PRTPLRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLL 244
           PRTPLRDITAVVRAIERTRARLRENEGQGSD+SPAPSDERALE+S SV+  HQEP +SL+
Sbjct: 121 PRTPLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEFSASVSGGHQEPDVSLV 180

Query: 245 TPKPTVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKA 304
           TPKPTVGKV KILRGIANEN   +E LTPQKKLLNSIDKVEKVV EELQKL++TPSAK+A
Sbjct: 181 TPKPTVGKVNKILRGIANENVEESEMLTPQKKLLNSIDKVEKVVREELQKLRKTPSAKRA 240

Query: 305 EREKRVRTLMSFR 314
           EREKRVRTLMSFR
Sbjct: 241 EREKRVRTLMSFR 253

[Close]

BLAST of IVF0012945 vs. NCBI nr
Match: KGN53824.1 (hypothetical protein Csa_015343 [Cucumis sativus])

HSP 1 Score: 560 bits (1442), Expect = 5.97e-200
Identity = 298/315 (94.60%), Postives = 301/315 (95.56%), Query Frame = 0


Query: 1   MSLSSAQIFPFQICPKFRLLSNQLHLLPSHFSSPLLTDRRSPPIHRHFFGILHSSPLESR 60
           MSLSSAQIFPFQICPKFRLLSNQLHLLPSHFSSPLLTDRR PPIHRHFF    ++P +  
Sbjct: 1   MSLSSAQIFPFQICPKFRLLSNQLHLLPSHFSSPLLTDRRLPPIHRHFF--FWNTPFKPT 60

Query: 61  GIS--IMSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTTAAQQRP 120
           GIS  IMSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTT  AQQRP
Sbjct: 61  GISRSIMSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRP 120

Query: 121 TNPGPGGGGANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPI 180
           TNPGPGGGG NLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPI
Sbjct: 121 TNPGPGGGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPI 180

Query: 181 WYPRTPLRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIIS 240
           WYPRTPLRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIIS
Sbjct: 181 WYPRTPLRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIIS 240

Query: 241 LLTPKPTVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAK 300
           LLTPKPTVGKVPKILRGIANENTVGAE LTPQKKLLNSIDKVEKVVMEELQKLKRTPSAK
Sbjct: 241 LLTPKPTVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAK 300

Query: 301 KAEREKRVRTLMSFR 313
           KAEREKRVRTLMSFR
Sbjct: 301 KAEREKRVRTLMSFR 313

[Close]

BLAST of IVF0012945 vs. NCBI nr
Match: XP_008460799.1 (PREDICTED: protein POLYCHOME [Cucumis melo] >KAA0053198.1 protein POLYCHOME [Cucumis melo var. makuwa] >TYK00145.1 protein POLYCHOME [Cucumis melo var. makuwa])

HSP 1 Score: 471 bits (1211), Expect = 8.94e-166
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0


Query: 65  MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTTAAQQRPTNPGPG 124
           MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTTAAQQRPTNPGPG
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTTAAQQRPTNPGPG 60

Query: 125 GGGANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 184
           GGGANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP
Sbjct: 61  GGGANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120

Query: 185 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 244
           LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP
Sbjct: 121 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 180

Query: 245 TVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 304
           TVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK
Sbjct: 181 TVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240

Query: 305 RVRTLMSFR 313
           RVRTLMSFR
Sbjct: 241 RVRTLMSFR 249

[Close]

BLAST of IVF0012945 vs. NCBI nr
Match: XP_004150162.1 (protein POLYCHOME [Cucumis sativus])

HSP 1 Score: 463 bits (1192), Expect = 7.00e-163
Identity = 245/249 (98.39%), Postives = 245/249 (98.39%), Query Frame = 0


Query: 65  MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTTAAQQRPTNPGPG 124
           MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTT  AQQRPTNPGPG
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 60

Query: 125 GGGANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 184
           GGG NLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP
Sbjct: 61  GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120

Query: 185 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 244
           LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP
Sbjct: 121 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 180

Query: 245 TVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 304
           TVGKVPKILRGIANENTVGAE LTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK
Sbjct: 181 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240

Query: 305 RVRTLMSFR 313
           RVRTLMSFR
Sbjct: 241 RVRTLMSFR 249

[Close]

BLAST of IVF0012945 vs. NCBI nr
Match: XP_038881398.1 (protein POLYCHOME [Benincasa hispida])

HSP 1 Score: 438 bits (1126), Expect = 7.87e-153
Identity = 231/249 (92.77%), Postives = 240/249 (96.39%), Query Frame = 0


Query: 65  MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTTAAQQRPTNPGPG 124
           MSEARDRLERQVD+AEVFARRRSEGILDEQEM S+LIGTPIAR TTTT AQQRPTNPGPG
Sbjct: 1   MSEARDRLERQVDHAEVFARRRSEGILDEQEMNSHLIGTPIARPTTTTTAQQRPTNPGPG 60

Query: 125 GGGANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 184
           GGGANLRR FGSPISGGIGRNRFLYR+PVL+REN +AGSSRR+RSRGRNSVLPIWYPRTP
Sbjct: 61  GGGANLRRAFGSPISGGIGRNRFLYRSPVLNRENTAAGSSRRNRSRGRNSVLPIWYPRTP 120

Query: 185 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 244
           LRDITAVVRAIERTRARLRENEGQGSD+SPAPSDERALEY+V VA DHQEP ISL+TPKP
Sbjct: 121 LRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEYTVLVAGDHQEPSISLVTPKP 180

Query: 245 TVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 304
           TVGKV KILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK
Sbjct: 181 TVGKVRKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240

Query: 305 RVRTLMSFR 313
           RVRTLMSFR
Sbjct: 241 RVRTLMSFR 249

[Close]

BLAST of IVF0012945 vs. NCBI nr
Match: XP_022925136.1 (protein POLYCHOME-like [Cucurbita moschata] >KAG7027617.1 Protein POLYCHOME [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 395 bits (1016), Expect = 5.02e-136
Identity = 216/253 (85.38%), Postives = 231/253 (91.30%), Query Frame = 0


Query: 65  MSEARDRLERQVDYAEVFARRRSEG-ILDEQEMGSNLIGTPIARATTTTAAQQRPTNPGP 124
           MSE+RDRLERQVDYAEVFARRRSEG ILDEQEM + LIGTPIARATTTT AQQRPTN GP
Sbjct: 1   MSESRDRLERQVDYAEVFARRRSEGGILDEQEMSTTLIGTPIARATTTTTAQQRPTNLGP 60

Query: 125 GGGG---ANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWY 184
           GGGG   A  RR+FGSPISGGIGRNRFLYR+PVLSREN +AGSSRRSRSR R+SVLPIWY
Sbjct: 61  GGGGGGGAIPRRSFGSPISGGIGRNRFLYRSPVLSRENTAAGSSRRSRSRVRHSVLPIWY 120

Query: 185 PRTPLRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLL 244
           PRTPLRDITAVVRAIERTRARLRENEGQGSD+SPAPSDERALE+S SV+  HQEP +SL+
Sbjct: 121 PRTPLRDITAVVRAIERTRARLRENEGQGSDNSPAPSDERALEFSASVSGGHQEPDVSLV 180

Query: 245 TPKPTVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKA 304
           TPKPTVGKV KILRGIANEN   +E LTPQKKLLNSIDKVEKVV EELQKL++TPSAK+A
Sbjct: 181 TPKPTVGKVNKILRGIANENVEESEMLTPQKKLLNSIDKVEKVVREELQKLRKTPSAKRA 240

Query: 305 EREKRVRTLMSFR 313
           EREKRVRTLMSFR
Sbjct: 241 EREKRVRTLMSFR 253

[Close]

BLAST of IVF0012945 vs. TAIR 10
Match: AT2G42260.1 (uv-b-insensitive 4 )

HSP 1 Score: 206.5 bits (524), Expect = 3.2e-53
Identity = 136/262 (51.91%), Postives = 163/262 (62.21%), Query Frame = 0


Query: 65  MSEARDRLERQVDYAEVFARRRSEGI-LDEQEMGSNLIGTPIARATTTTAAQQRPTNPGP 124
           M EARDR+ERQVDY   F  RRS GI LDE     NL G+P+ R  +           G 
Sbjct: 1   MPEARDRIERQVDYPAAFLNRRSHGILLDEPATQHNLFGSPVQRVPSEATGGLGSIGQGS 60

Query: 125 -GGGGANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPR 184
             G G  +R  FG   +GG  R +  +R+P   REN S G +RR R+R  NSVLP WYPR
Sbjct: 61  MTGRGGLVRGNFGIRRTGGGRRGQIQFRSP-QGRENMSLGVTRRGRARASNSVLPSWYPR 120

Query: 185 TPLRDITAVVRAIERTRARLRENEGQGSD-SSPAPSDERALEYSVSVASDHQEPIISLLT 244
           TPLRDI+AVVRAIER RAR+   EG G D  +P P     L+  V ++  H E   S++T
Sbjct: 121 TPLRDISAVVRAIERRRARM--GEGVGRDIETPTPQQLGVLDSLVPLSGAHLEHDYSMVT 180

Query: 245 PKPTVG----------KVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKL 304
           P P++G          KV +IL  I  ENT   + LTP+KKLLNSIDKVEKVVMEE+QK+
Sbjct: 181 PGPSIGFKRPWPPSTAKVHQILLDITRENTGEEDALTPEKKLLNSIDKVEKVVMEEIQKM 240

Query: 305 KRTPSAKKAEREKRVRTLMSFR 314
           K TPSAK+AEREKRVRTLMS R
Sbjct: 241 KSTPSAKRAEREKRVRTLMSMR 259

[Close]

BLAST of IVF0012945 vs. TAIR 10
Match: AT3G57860.1 (UV-B-insensitive 4-like )

HSP 1 Score: 145.6 bits (366), Expect = 6.7e-35
Identity = 116/266 (43.61%), Postives = 143/266 (53.76%), Query Frame = 0


Query: 65  MSEARDRLERQVDYAEVFARRRSEGI-LDEQEMGSNLIGTPIARATTTTAAQQRPTNPGP 124
           M EARDR ER VDY+ +FA RR  GI LDE +   +LI +P+            P     
Sbjct: 1   MPEARDRTERPVDYSTIFANRRRHGILLDEPDSRLSLIESPV-----------NPDIGSI 60

Query: 125 GGGGANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRT 184
           GG G  +R  F +   G        +R P   REN    ++RR R  G   +LP WYPRT
Sbjct: 61  GGTGGLVRGNFTTWRPGNGRGGHTPFRLP-QGRENMPIVTARRGRGGG---LLPSWYPRT 120

Query: 185 PLRDITAVVRAIERTRARLRENEGQGSDSS-----PAPSDERALEYSVSVASDHQEPIIS 244
           PLRDIT +VRAIER     R   G G D       P       LE  V ++ +H+    S
Sbjct: 121 PLRDITHIVRAIER-----RRGAGTGGDDGRVIEIPTHRQVGVLESPVPLSGEHK---CS 180

Query: 245 LLTPKPTVG----------KVPKILRGIANE-NTVGAETLTPQKKLLNSIDKVEKVVMEE 304
           ++TP P+VG          KV K+L  I  E     A  +TP+KKLLNSIDKVEK+VM E
Sbjct: 181 MVTPGPSVGFKRSCPPSTAKVQKMLLDITKEIAEEEAGFITPEKKLLNSIDKVEKIVMAE 240

Query: 305 LQKLKRTPSAKKAEREKRVRTLMSFR 314
           +QKLK TP AK+ EREKRVRTLM+ R
Sbjct: 241 IQKLKSTPQAKREEREKRVRTLMTMR 243

The following BLAST results are available for this feature:

BLAST of IVF0012945 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O48533	4.5e-52	51.91	Protein POLYCHOME OS=Arabidopsis thaliana OX=3702 GN=PYM PE=1 SV=1	[more]
Q9M2R1	9.5e-34	43.61	Protein GIGAS CELL1 OS=Arabidopsis thaliana OX=3702 GN=GIG1 PE=1 SV=1	[more]

BLAST of IVF0012945 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY99	1.3e-155	94.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G152290 PE=4 SV=1	[more]
A0A5D3BM43	1.1e-128	100.00	Protein POLYCHOME OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2510G0...	[more]
A0A1S3CDA1	1.1e-128	100.00	protein POLYCHOME OS=Cucumis melo OX=3656 GN=LOC103499559 PE=4 SV=1	[more]
A0A6J1HRM8	4.3e-106	85.04	protein POLYCHOME OS=Cucurbita maxima OX=3661 GN=LOC111466091 PE=4 SV=1	[more]
A0A6J1EBD1	4.3e-106	85.38	protein POLYCHOME-like OS=Cucurbita moschata OX=3662 GN=LOC111432471 PE=4 SV=1	[more]

BLAST of IVF0012945 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53824.1	5.97e-200	94.60	hypothetical protein Csa_015343 [Cucumis sativus]	[more]
XP_008460799.1	8.94e-166	100.00	PREDICTED: protein POLYCHOME [Cucumis melo] >KAA0053198.1 protein POLYCHOME [Cuc...	[more]
XP_004150162.1	7.00e-163	98.39	protein POLYCHOME [Cucumis sativus]	[more]
XP_038881398.1	7.87e-153	92.77	protein POLYCHOME [Benincasa hispida]	[more]
XP_022925136.1	5.02e-136	85.38	protein POLYCHOME-like [Cucurbita moschata] >KAG7027617.1 Protein POLYCHOME [Cuc...	[more]

BLAST of IVF0012945 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42260.1	3.2e-53	51.91	uv-b-insensitive 4	[more]
AT3G57860.1	6.7e-35	43.61	UV-B-insensitive 4-like	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 185..205
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 293..313
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 202..222
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..171
None	No IPR available	PANTHER	PTHR35119:SF1	PROTEIN POLYCHOME	coord: 65..313
IPR034590	POLYCHOME/GIGAS CELL1	PANTHER	PTHR35119	PROTEIN POLYCHOME	coord: 65..313

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0012945.1	IVF0012945.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1904667	negative regulation of ubiquitin protein ligase activity
biological_process	GO:0051783	regulation of nuclear division
cellular_component	GO:0005634	nucleus