IVF0012382 (gene) Melon (IVF77) v1

Overview


Name	IVF0012382
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Protein LTV1-like protein
Location	chr06: 15603393 .. 15604089 (-)
RNA-Seq Expression	IVF0012382
Synteny	IVF0012382

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACACACACATATGTATATGCTTATTTATTCGTTACTTCATATTGTGATGGAACTGCTGCCACCGATCGTGTTTTTGTTTGGGTCATTTATGCAGTCTCGTGGGGAAGTTGGTGGAACGTCGTCACCAGAAAATGTCAGAAGAGAGATTTTGGAGCTTGAGTTCCCTGATGATGGTTACAATTATTTGCTGTATCTTCGGGTGATTAGGAATACTGGTAATGGTTCGACATCTTATCAGAACCCCAAGGCCAAGCTGAATCATGTTCCACTCGATGAGAAGGTTGGTTGTTTTATTTTGTTCAGAATACAAACTATTTTTTGGCATTTGGGCTTTATTCATAATACGGATTGGATACATAAGTTAGCACATTCAACATTATACTGTGGTTACCTATTTATGAAAATAAGCAACAGTTTGGGAAGCTTTTGTGTTGTCTCTGGATAAGTTTTTTTCCCTTTCGTACAATAGCGTTTCTTTGATTGTTTTGTAGGCTTATGACGCCTCCAGAATGATTGTTTCTAAAGTGAACTTTGATGCCAATGAGAACGTATACGAAGCTGTATCCAAGATTGTTGGAGTCAGGGTTCAAAATGTTGTTGACCTTGAAATAGCTGCCCTTCTTAATGACGATGATTTATTGCGGTTTGGTTCTGATGTGACGATGATTTATTGCGATTTGGTTATGATGTGA

mRNA sequence

ATGGAACACACACATATGTATATGCTTATTTATTCGTTACTTCATATTGTGATGGAACTGCTGCCACCGATCGTGTTTTTGTTTGGGTCATTTATGCAGTCTCGTGGGGAAGTTGGTGGAACGTCGTCACCAGAAAATGTCAGAAGAGAGATTTTGGAGCTTGAGTTCCCTGATGATGGTTACAATTATTTGCTGTATCTTCGGGCTTATGACGCCTCCAGAATGATTGTTTCTAAAGTGAACTTTGATGCCAATGAGAACGTATACGAAGCTGTATCCAAGATTGTTGGAGTCAGGGTTCAAAATGTTGTTGACCTTGAAATAGCTGCCCTTCTTAATGACGATGATTTATTGCGGTTTGGTTCTGATGTGACGATGATTTATTGCGATTTGGTTATGATGTGA

Coding sequence (CDS)

ATGGAACACACACATATGTATATGCTTATTTATTCGTTACTTCATATTGTGATGGAACTGCTGCCACCGATCGTGTTTTTGTTTGGGTCATTTATGCAGTCTCGTGGGGAAGTTGGTGGAACGTCGTCACCAGAAAATGTCAGAAGAGAGATTTTGGAGCTTGAGTTCCCTGATGATGGTTACAATTATTTGCTGTATCTTCGGGCTTATGACGCCTCCAGAATGATTGTTTCTAAAGTGAACTTTGATGCCAATGAGAACGTATACGAAGCTGTATCCAAGATTGTTGGAGTCAGGGTTCAAAATGTTGTTGACCTTGAAATAGCTGCCCTTCTTAATGACGATGATTTATTGCGGTTTGGTTCTGATGTGACGATGATTTATTGCGATTTGGTTATGATGTGA

Protein sequence

MEHTHMYMLIYSLLHIVMELLPPIVFLFGSFMQSRGEVGGTSSPENVRREILELEFPDDGYNYLLYLRAYDASRMIVSKVNFDANENVYEAVSKIVGVRVQNVVDLEIAALLNDDDLLRFGSDVTMIYCDLVMM

Homology

[Close]

BLAST of IVF0012382 vs. ExPASy TrEMBL
Match: A0A5A7V3C9 (Protein LTV1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G001120 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 2.0e-44
Identity = 102/130 (78.46%), Postives = 103/130 (79.23%), Query Frame = 0


Query: 32  MQSRGEVGGTSSPENVRREILELEFPDDGYNYLLYLR----------------------- 91
           MQSRGEVGGTSSPENVRREILELEFPDDGYNYLLYLR                       
Sbjct: 1   MQSRGEVGGTSSPENVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVP 60

Query: 92  ----AYDASRMIVSKVNFDANENVYEAVSKIVGVRVQNVVDLEIAALLNDDDLLRFGSDV 135
               AYDASRMIVSKVNFDANENVYEAVSKIVGVRVQNVVDLEIAALLNDDDLLRFGSDV
Sbjct: 61  LDEKAYDASRMIVSKVNFDANENVYEAVSKIVGVRVQNVVDLEIAALLNDDDLLRFGSDV 120

[Close]

BLAST of IVF0012382 vs. ExPASy TrEMBL
Match: A0A5D3CI19 (Protein LTV1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001180 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.3e-32
Identity = 85/134 (63.43%), Postives = 94/134 (70.15%), Query Frame = 0


Query: 28  FGSFMQSRGEVGGTSS-PENVRREILELEFPDDGYNYLLYLR------------------ 87
           FGS MQSRGEVGGTSS PENVRREILEL FPDDGYNYLL+LR                  
Sbjct: 86  FGSSMQSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAK 145

Query: 88  ---------AYDASRMIVSKVNFDANENVYEAVSKIVGVRVQNVVDLEIAALLNDDDLLR 134
                    AYDASRM+VSK+N DA+ENVY+  SKIVG+RVQNVVD EIAALL+DDDL R
Sbjct: 146 LNQVPRDEKAYDASRMVVSKMNVDADENVYKVASKIVGIRVQNVVDPEIAALLDDDDLSR 205

[Close]

BLAST of IVF0012382 vs. ExPASy TrEMBL
Match: A0A1S3BKZ8 (protein LTV1 homolog OS=Cucumis melo OX=3656 GN=LOC103490738 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.3e-32
Identity = 85/134 (63.43%), Postives = 94/134 (70.15%), Query Frame = 0


Query: 28  FGSFMQSRGEVGGTSS-PENVRREILELEFPDDGYNYLLYLR------------------ 87
           FGS MQSRGEVGGTSS PENVRREILEL FPDDGYNYLL+LR                  
Sbjct: 86  FGSSMQSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAK 145

Query: 88  ---------AYDASRMIVSKVNFDANENVYEAVSKIVGVRVQNVVDLEIAALLNDDDLLR 134
                    AYDASRM+VSK+N DA+ENVY+  SKIVG+RVQNVVD EIAALL+DDDL R
Sbjct: 146 LNQVPRDEKAYDASRMVVSKMNVDADENVYKVASKIVGIRVQNVVDPEIAALLDDDDLSR 205

[Close]

BLAST of IVF0012382 vs. ExPASy TrEMBL
Match: A0A0A0L517 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006680 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.1e-29
Identity = 81/134 (60.45%), Postives = 91/134 (67.91%), Query Frame = 0


Query: 28  FGSFMQSRGEVGGTSS-PENVRREILELEFPDDGYNYLLYLR------------------ 87
           FGS MQ  G+VGGTSS PENVR++ILEL FPDDGYNYLL+LR                  
Sbjct: 86  FGSSMQFSGDVGGTSSLPENVRKDILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAK 145

Query: 88  ---------AYDASRMIVSKVNFDANENVYEAVSKIVGVRVQNVVDLEIAALLNDDDLLR 134
                    AYDASRMIVSK+N DA+EN Y+  SKIVGVRVQNVVD EIAALL+DDDL R
Sbjct: 146 LNQVPRDEKAYDASRMIVSKMNVDADENAYKVASKIVGVRVQNVVDPEIAALLDDDDLSR 205

[Close]

BLAST of IVF0012382 vs. ExPASy TrEMBL
Match: A0A5A7SNI8 (Protein LTV1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00010 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.7e-25
Identity = 70/101 (69.31%), Postives = 71/101 (70.30%), Query Frame = 0


Query: 32  MQSRGEVGGTSSPENVRREILELEFPDDGYNYLLYLR----------------------- 91
           MQSRGEVGGTSS +NVRREILELEFPDDGYNYLLYLR                       
Sbjct: 7   MQSRGEVGGTSSLKNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVP 66

Query: 92  ----AYDASRMIVSKVNFDANENVYEAVSKIVGVRVQNVVD 106
               AYDASRMIVSKVNFDAN NVYEA SKIVGVRVQNVVD
Sbjct: 67  LDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVVD 107

[Close]

BLAST of IVF0012382 vs. NCBI nr
Match: KAA0060375.1 (protein LTV1-like protein [Cucumis melo var. makuwa] >TYK22115.1 protein LTV1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 184 bits (466), Expect = 6.95e-57
Identity = 102/130 (78.46%), Postives = 103/130 (79.23%), Query Frame = 0


Query: 32  MQSRGEVGGTSSPENVRREILELEFPDDGYNYLLYLR----------------------- 91
           MQSRGEVGGTSSPENVRREILELEFPDDGYNYLLYLR                       
Sbjct: 1   MQSRGEVGGTSSPENVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVP 60

Query: 92  ----AYDASRMIVSKVNFDANENVYEAVSKIVGVRVQNVVDLEIAALLNDDDLLRFGSDV 134
               AYDASRMIVSKVNFDANENVYEAVSKIVGVRVQNVVDLEIAALLNDDDLLRFGSDV
Sbjct: 61  LDEKAYDASRMIVSKVNFDANENVYEAVSKIVGVRVQNVVDLEIAALLNDDDLLRFGSDV 120

[Close]

BLAST of IVF0012382 vs. NCBI nr
Match: XP_008448616.1 (PREDICTED: protein LTV1 homolog [Cucumis melo] >KAA0053005.1 protein LTV1-like protein [Cucumis melo var. makuwa] >TYK11461.1 protein LTV1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 143 bits (361), Expect = 2.72e-37
Identity = 83/125 (66.40%), Postives = 90/125 (72.00%), Query Frame = 0


Query: 28  FGSFMQSRGEVGGTSS-PENVRREILELEFPDDGYNYLLYLR------------------ 87
           FGS MQSRGEVGGTSS PENVRREILEL FPDDGYNYLL+LR                  
Sbjct: 86  FGSSMQSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAK 145

Query: 88  ---------AYDASRMIVSKVNFDANENVYEAVSKIVGVRVQNVVDLEIAALLNDDDLLR 124
                    AYDASRM+VSK+N DA+ENVY+  SKIVG+RVQNVVD EIAALL+DDDL R
Sbjct: 146 LNQVPRDEKAYDASRMVVSKMNVDADENVYKVASKIVGIRVQNVVDPEIAALLDDDDLSR 205

[Close]

BLAST of IVF0012382 vs. NCBI nr
Match: XP_011650323.1 (protein LTV1 homolog [Cucumis sativus] >KGN55707.1 hypothetical protein Csa_009930 [Cucumis sativus])

HSP 1 Score: 134 bits (338), Expect = 5.15e-34
Identity = 79/125 (63.20%), Postives = 87/125 (69.60%), Query Frame = 0


Query: 28  FGSFMQSRGEVGGTSS-PENVRREILELEFPDDGYNYLLYLR------------------ 87
           FGS MQ  G+VGGTSS PENVR++ILEL FPDDGYNYLL+LR                  
Sbjct: 86  FGSSMQFSGDVGGTSSLPENVRKDILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAK 145

Query: 88  ---------AYDASRMIVSKVNFDANENVYEAVSKIVGVRVQNVVDLEIAALLNDDDLLR 124
                    AYDASRMIVSK+N DA+EN Y+  SKIVGVRVQNVVD EIAALL+DDDL R
Sbjct: 146 LNQVPRDEKAYDASRMIVSKMNVDADENAYKVASKIVGVRVQNVVDPEIAALLDDDDLSR 205

[Close]

BLAST of IVF0012382 vs. NCBI nr
Match: KAA0032612.1 (protein LTV1-like protein [Cucumis melo var. makuwa] >TYK20874.1 protein LTV1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 121 bits (303), Expect = 1.44e-32
Identity = 70/101 (69.31%), Postives = 71/101 (70.30%), Query Frame = 0


Query: 32  MQSRGEVGGTSSPENVRREILELEFPDDGYNYLLYLR----------------------- 91
           MQSRGEVGGTSS +NVRREILELEFPDDGYNYLLYLR                       
Sbjct: 7   MQSRGEVGGTSSLKNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVP 66

Query: 92  ----AYDASRMIVSKVNFDANENVYEAVSKIVGVRVQNVVD 105
               AYDASRMIVSKVNFDAN NVYEA SKIVGVRVQNVVD
Sbjct: 67  LDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVVD 107

[Close]

BLAST of IVF0012382 vs. NCBI nr
Match: XP_038898842.1 (protein LTV1 homolog [Benincasa hispida])

HSP 1 Score: 123 bits (309), Expect = 6.39e-30
Identity = 74/125 (59.20%), Postives = 83/125 (66.40%), Query Frame = 0


Query: 28  FGSFMQSRGEVGGTSS-PENVRREILELEFPDDGYNYLLYLR------------------ 87
           FG  ++ R EVGGT+  PENVRREILEL FPDDGYNYLL+LR                  
Sbjct: 86  FGPSLRLREEVGGTAPLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSAFYQNPKAK 145

Query: 88  ---------AYDASRMIVSKVNFDANENVYEAVSKIVGVRVQNVVDLEIAALLNDDDLLR 124
                    AYDASR+IVSK N DA+ N+Y+  SK VGVRVQNVVD EIAALL+DDDL R
Sbjct: 146 LNQVPRDEKAYDASRVIVSKGNIDADGNIYKVASKTVGVRVQNVVDPEIAALLDDDDLSR 205

[Close]

BLAST of IVF0012382 vs. TAIR 10
Match: AT3G49990.1 (unknown protein; Has 1524 Blast hits to 1298 proteins in 225 species: Archae - 9; Bacteria - 84; Metazoa - 474; Fungi - 184; Plants - 98; Viruses - 17; Other Eukaryotes - 658 (source: NCBI BLink). )

HSP 1 Score: 77.0 bits (188), Expect = 1.3e-14
Identity = 51/123 (41.46%), Postives = 67/123 (54.47%), Query Frame = 0


Query: 41  TSSPENVRREILELEFPDDGYNYLLYLR---------------------------AYDAS 100
           +S P +VR+EILEL +PDDGYNYL +LR                           AYDAS
Sbjct: 83  SSLPAHVRKEILELGYPDDGYNYLEHLREIKNTGGGSNFYVNPKYEVAQLPRDVKAYDAS 142

Query: 101 RMIVS-KVNFDANEN--VYEAVSKIVGVRVQNVVDLEIAALLNDDDLLRFGSDVTMIYCD 134
           R+ +S  VN + N+N  +Y   SK V V+VQ  +D E+AALL + D   FGSDV  +  D
Sbjct: 143 RVKISGMVNEEGNDNKLMYSVASKTVNVKVQKAIDPEVAALLENSDGSEFGSDVEDLEED 202

The following BLAST results are available for this feature:

BLAST of IVF0012382 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0012382 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V3C9	2.0e-44	78.46	Protein LTV1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5D3CI19	2.3e-32	63.43	Protein LTV1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BKZ8	2.3e-32	63.43	protein LTV1 homolog OS=Cucumis melo OX=3656 GN=LOC103490738 PE=3 SV=1	[more]
A0A0A0L517	1.1e-29	60.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006680 PE=3 SV=1	[more]
A0A5A7SNI8	2.7e-25	69.31	Protein LTV1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of IVF0012382 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060375.1	6.95e-57	78.46	protein LTV1-like protein [Cucumis melo var. makuwa] >TYK22115.1 protein LTV1-li...	[more]
XP_008448616.1	2.72e-37	66.40	PREDICTED: protein LTV1 homolog [Cucumis melo] >KAA0053005.1 protein LTV1-like p...	[more]
XP_011650323.1	5.15e-34	63.20	protein LTV1 homolog [Cucumis sativus] >KGN55707.1 hypothetical protein Csa_0099...	[more]
KAA0032612.1	1.44e-32	69.31	protein LTV1-like protein [Cucumis melo var. makuwa] >TYK20874.1 protein LTV1-li...	[more]
XP_038898842.1	6.39e-30	59.20	protein LTV1 homolog [Benincasa hispida]	[more]

BLAST of IVF0012382 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49990.1	1.3e-14	41.46	unknown protein; Has 1524 Blast hits to 1298 proteins in 225 species: Archae - 9...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0012382.1	IVF0012382.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042274	ribosomal small subunit biogenesis
biological_process	GO:0000056	ribosomal small subunit export from nucleus
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
cellular_component	GO:0030688	preribosome, small subunit precursor