IVF0012121 (gene) Melon (IVF77) v1

Overview
NameIVF0012121
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionlight-harvesting complex-like protein OHP1, chloroplastic
Locationchr04: 31345998 .. 31346604 (-)
RNA-Seq ExpressionIVF0012121
SyntenyIVF0012121
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCTTCCTCTGTGATTTTATCTTCTCTTCCTCCGGCCAGAGCTCTGACTTTTAACCAACAAGACGGTCGCCACGGTCTCTTTCAAATTGGGTCTTCTGTCCGTGCCAATAACAGCAGGGCTCGTCCCTCTTTCAGGGTTCAGGCCGCCGCAAAGCCTCCGGCTGGAGTACGCTCTCTATCCTCTTCAAATTTGTGAACTTTTTTCCCATTACTGTTTCACCTGTTGAAAAAATGGTTTACATCTCAAAAGCTTGAATAAATCCAGAATAATACATTCATGCGGGCTTGTGAATTACCTATTCATTTCTGTTTTGAAGGTTGAATTGCCAAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAATTCTAGAGCCTGCATGATAGGCCTTATTGGGACTTTCGTAGTGGAGCTGGTGAGGTTTTCTTTTCTTCTTAATATGAAGAAAACTTTCTATCTTGTACCTTTTCTACCCATGTTTACGGGTTTTATCTGTCTGATTTTTCAGATATTGAACAAGAGTATACTTCAAGTGATTGGAGTTGATGTTGGGAAAGGCCTGGATCTTCCTCTTTGA

mRNA sequence

ATGGCGTCTTCCTCTGTGATTTTATCTTCTCTTCCTCCGGCCAGAGCTCTGACTTTTAACCAACAAGACGGTCGCCACGGTCTCTTTCAAATTGGGTCTTCTGTCCGTGCCAATAACAGCAGGGCTCGTCCCTCTTTCAGGGTTCAGGCCGCCGCAAAGCCTCCGGCTGGAGTTGAATTGCCAAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAATTCTAGAGCCTGCATGATAGGCCTTATTGGGACTTTCGTAGTGGAGCTGATATTGAACAAGAGTATACTTCAAGTGATTGGAGTTGATGTTGGGAAAGGCCTGGATCTTCCTCTTTGA

Coding sequence (CDS)

ATGGCGTCTTCCTCTGTGATTTTATCTTCTCTTCCTCCGGCCAGAGCTCTGACTTTTAACCAACAAGACGGTCGCCACGGTCTCTTTCAAATTGGGTCTTCTGTCCGTGCCAATAACAGCAGGGCTCGTCCCTCTTTCAGGGTTCAGGCCGCCGCAAAGCCTCCGGCTGGAGTTGAATTGCCAAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAATTCTAGAGCCTGCATGATAGGCCTTATTGGGACTTTCGTAGTGGAGCTGATATTGAACAAGAGTATACTTCAAGTGATTGGAGTTGATGTTGGGAAAGGCCTGGATCTTCCTCTTTGA

Protein sequence

MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL
Homology
BLAST of IVF0012121 vs. ExPASy Swiss-Prot
Match: O81208 (Light-harvesting complex-like protein OHP1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OHP1 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-23
Identity = 54/73 (73.97%), Postives = 63/73 (86.30%), Query Frame = 0

Query: 48  VQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQV 107
           V  AAK P GV +PK +PK +  FLGFT+TAEIWNSRACMIGLIGTF+VELILNK IL++
Sbjct: 38  VVRAAKLPEGVIVPKAQPKSQPAFLGFTQTAEIWNSRACMIGLIGTFIVELILNKGILEL 97

Query: 108 IGVDVGKGLDLPL 121
           IGV++GKGLDLPL
Sbjct: 98  IGVEIGKGLDLPL 110

BLAST of IVF0012121 vs. ExPASy TrEMBL
Match: A0A5A7TRS8 (High-light-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001530 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 6.4e-58
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0

Query: 1   MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVEL 60
           MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVEL
Sbjct: 1   MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVEL 60

Query: 61  PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL 120
           PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL
Sbjct: 61  PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL 120

BLAST of IVF0012121 vs. ExPASy TrEMBL
Match: A0A1S3B5V9 (high-light-induced protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486373 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 6.4e-58
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0

Query: 1   MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVEL 60
           MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVEL
Sbjct: 1   MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVEL 60

Query: 61  PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL 120
           PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL
Sbjct: 61  PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL 120

BLAST of IVF0012121 vs. ExPASy TrEMBL
Match: A0A0A0LAI0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734070 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 7.6e-51
Identity = 109/120 (90.83%), Postives = 112/120 (93.33%), Query Frame = 0

Query: 1   MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVEL 60
           MASSSVILSSLPPARALT N QD RH LFQIG SVRAN+SRAR SFR+QAAAKPPAGVEL
Sbjct: 1   MASSSVILSSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVEL 60

Query: 61  PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL 120
           PKVEPKF+APFLGFTKTAEIWNSRACMIGLIG FVVELILNK ILQVIGVDVGKGLDLPL
Sbjct: 61  PKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 120

BLAST of IVF0012121 vs. ExPASy TrEMBL
Match: A0A6J1CV10 (light-harvesting complex-like protein OHP1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015030 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.2e-41
Identity = 101/121 (83.47%), Postives = 107/121 (88.43%), Query Frame = 0

Query: 1   MASSSVIL-SSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVE 60
           MASSS +L SSL PARA T N+QDGR  LFQIG SVRANNSRAR  FRVQ AAK PAGVE
Sbjct: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIG-SVRANNSRARVPFRVQ-AAKLPAGVE 60

Query: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLP 120
           LPKVEPKFEAPFLGFTKTAEIWNSRACM+GL+G F+VELIL+K ILQVIGVDVGKGLDLP
Sbjct: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVELILDKGILQVIGVDVGKGLDLP 119

BLAST of IVF0012121 vs. ExPASy TrEMBL
Match: A0A6J1J0W8 (light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111482448 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.5e-40
Identity = 99/121 (81.82%), Postives = 105/121 (86.78%), Query Frame = 0

Query: 1   MASSSVIL-SSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVE 60
           MASS+ IL SSL PARA   ++QDGR  LFQ+G SVRANN RAR  FRVQ AAKPPAGVE
Sbjct: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVG-SVRANNRRARAPFRVQ-AAKPPAGVE 60

Query: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLP 120
           LPKV+PKFEAPFLGFTKTAEIWNSRA MIGLIG FVVELILNK ILQVIGVD+GKGLDLP
Sbjct: 61  LPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLP 119

BLAST of IVF0012121 vs. NCBI nr
Match: XP_008442523.1 (PREDICTED: high-light-induced protein, chloroplastic [Cucumis melo] >KAA0044105.1 high-light-induced protein [Cucumis melo var. makuwa] >TYK25033.1 high-light-induced protein [Cucumis melo var. makuwa])

HSP 1 Score: 234 bits (596), Expect = 2.35e-77
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0

Query: 1   MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVEL 60
           MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVEL
Sbjct: 1   MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVEL 60

Query: 61  PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL 120
           PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL
Sbjct: 61  PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL 120

BLAST of IVF0012121 vs. NCBI nr
Match: XP_004137791.1 (light-harvesting complex-like protein OHP1, chloroplastic [Cucumis sativus] >KGN58853.1 hypothetical protein Csa_001588 [Cucumis sativus])

HSP 1 Score: 210 bits (535), Expect = 4.74e-68
Identity = 109/120 (90.83%), Postives = 112/120 (93.33%), Query Frame = 0

Query: 1   MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVEL 60
           MASSSVILSSLPPARALT N QD RH LFQIG SVRAN+SRAR SFR+QAAAKPPAGVEL
Sbjct: 1   MASSSVILSSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVEL 60

Query: 61  PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL 120
           PKVEPKF+APFLGFTKTAEIWNSRACMIGLIG FVVELILNK ILQVIGVDVGKGLDLPL
Sbjct: 61  PKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 120

BLAST of IVF0012121 vs. NCBI nr
Match: XP_038905156.1 (light-harvesting complex-like protein OHP1, chloroplastic [Benincasa hispida])

HSP 1 Score: 183 bits (464), Expect = 3.06e-57
Identity = 104/121 (85.95%), Postives = 107/121 (88.43%), Query Frame = 0

Query: 1   MASSSVILSS-LPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVE 60
           MASSS ILSS L PARA   +QQDGR  LFQIGS VRANNSR+R  FRVQAA KPPAGVE
Sbjct: 1   MASSSAILSSSLLPARAPICSQQDGRLCLFQIGS-VRANNSRSRVPFRVQAA-KPPAGVE 60

Query: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLP 120
           LPKVEPKFEAPFLGFTKTAE+WNSRACMIGLIG FVVELILNK ILQVIGVDVGKGLDLP
Sbjct: 61  LPKVEPKFEAPFLGFTKTAEVWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLP 119

BLAST of IVF0012121 vs. NCBI nr
Match: XP_022145630.1 (light-harvesting complex-like protein OHP1, chloroplastic [Momordica charantia])

HSP 1 Score: 178 bits (451), Expect = 2.93e-55
Identity = 101/121 (83.47%), Postives = 107/121 (88.43%), Query Frame = 0

Query: 1   MASSSVILSS-LPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVE 60
           MASSS +LSS L PARA T N+QDGR  LFQIGS VRANNSRAR  FRVQAA K PAGVE
Sbjct: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGS-VRANNSRARVPFRVQAA-KLPAGVE 60

Query: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLP 120
           LPKVEPKFEAPFLGFTKTAEIWNSRACM+GL+G F+VELIL+K ILQVIGVDVGKGLDLP
Sbjct: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVELILDKGILQVIGVDVGKGLDLP 119

BLAST of IVF0012121 vs. NCBI nr
Match: XP_022934608.1 (light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita moschata] >XP_022983997.1 light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita maxima] >KAG6580528.1 Light-harvesting complex-like protein OHP1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017279.1 Light-harvesting complex-like protein OHP1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 174 bits (442), Expect = 6.90e-54
Identity = 99/121 (81.82%), Postives = 105/121 (86.78%), Query Frame = 0

Query: 1   MASSSVILSS-LPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVE 60
           MASS+ ILSS L PARA   ++QDGR  LFQ+GS VRANN RAR  FRVQAA KPPAGVE
Sbjct: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGS-VRANNRRARAPFRVQAA-KPPAGVE 60

Query: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLP 120
           LPKV+PKFEAPFLGFTKTAEIWNSRA MIGLIG FVVELILNK ILQVIGVD+GKGLDLP
Sbjct: 61  LPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLP 119

BLAST of IVF0012121 vs. TAIR 10
Match: AT5G02120.1 (one helix protein )

HSP 1 Score: 110.5 bits (275), Expect = 9.2e-25
Identity = 54/73 (73.97%), Postives = 63/73 (86.30%), Query Frame = 0

Query: 48  VQAAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQV 107
           V  AAK P GV +PK +PK +  FLGFT+TAEIWNSRACMIGLIGTF+VELILNK IL++
Sbjct: 38  VVRAAKLPEGVIVPKAQPKSQPAFLGFTQTAEIWNSRACMIGLIGTFIVELILNKGILEL 97

Query: 108 IGVDVGKGLDLPL 121
           IGV++GKGLDLPL
Sbjct: 98  IGVEIGKGLDLPL 110

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
O812081.3e-2373.97Light-harvesting complex-like protein OHP1, chloroplastic OS=Arabidopsis thalian... [more]
Match NameE-valueIdentityDescription
A0A5A7TRS86.4e-58100.00High-light-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A1S3B5V96.4e-58100.00high-light-induced protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10348637... [more]
A0A0A0LAI07.6e-5190.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734070 PE=4 SV=1[more]
A0A6J1CV103.2e-4183.47light-harvesting complex-like protein OHP1, chloroplastic OS=Momordica charantia... [more]
A0A6J1J0W83.5e-4081.82light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita maxima OX... [more]
Match NameE-valueIdentityDescription
XP_008442523.12.35e-77100.00PREDICTED: high-light-induced protein, chloroplastic [Cucumis melo] >KAA0044105.... [more]
XP_004137791.14.74e-6890.83light-harvesting complex-like protein OHP1, chloroplastic [Cucumis sativus] >KGN... [more]
XP_038905156.13.06e-5785.95light-harvesting complex-like protein OHP1, chloroplastic [Benincasa hispida][more]
XP_022145630.12.93e-5583.47light-harvesting complex-like protein OHP1, chloroplastic [Momordica charantia][more]
XP_022934608.16.90e-5481.82light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita moschata] >... [more]
Match NameE-valueIdentityDescription
AT5G02120.19.2e-2573.97one helix protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR14154UPF0041 BRAIN PROTEIN 44-RELATEDcoord: 1..117
NoneNo IPR availablePANTHERPTHR14154:SF51LIGHT-HARVESTING COMPLEX-LIKE PROTEIN OHP1, CHLOROPLASTICcoord: 1..117
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 64..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0012121.2IVF0012121.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009535 chloroplast thylakoid membrane