IVF0011755 (gene) Melon (IVF77) v1

Overview


Name	IVF0011755
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	NBS-LRR type resistance protein
Location	chr03: 12035632 .. 12035895 (+)
RNA-Seq Expression	IVF0011755
Synteny	IVF0011755

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCTAGTAGAAGTCGTTTTAAAAGGTCCGAAACGACACCCGTTGACTTACCCAAGGAAAGGAAAGCTATCTCCAAACAAGCCTGCCGCGGGACCCGAGAACTTAAGCGTCAACTCCTTACTACCTTCAAGGGAGAAAAGTAGGGCCATATCTTATTCCAATATTCAAACTCGAATCGGATGTAGCAACATTAGGGAATTCATCGAAAACAATCCTTACCGAAAACTCACCGTGACCCGGAGTGGAGGAAGGAAGGCTTAG

mRNA sequence

ATGACTCTAGTAGAAGTCGTTTTAAAAGGTCCGAAACGACACCCGTTGACTTACCCAAGGAAAGGAAAGCTATCTCCAAACAAGCCTGCCGCGGGACCCGAGAACTTAAGCGTCAACTCCTTACTACCTTCAAGGGAGAAAAGTAGGGCCATATCTTATTCCAATATTCAAACTCGAATCGGATGTAGCAACATTAGGGAATTCATCGAAAACAATCCTTACCGAAAACTCACCGTGACCCGGAGTGGAGGAAGGAAGGCTTAG

Coding sequence (CDS)

ATGACTCTAGTAGAAGTCGTTTTAAAAGGTCCGAAACGACACCCGTTGACTTACCCAAGGAAAGGAAAGCTATCTCCAAACAAGCCTGCCGCGGGACCCGAGAACTTAAGCGTCAACTCCTTACTACCTTCAAGGGAGAAAAGTAGGGCCATATCTTATTCCAATATTCAAACTCGAATCGGATGTAGCAACATTAGGGAATTCATCGAAAACAATCCTTACCGAAAACTCACCGTGACCCGGAGTGGAGGAAGGAAGGCTTAG

Protein sequence

MTLVEVVLKGPKRHPLTYPRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIENNPYRKLTVTRSGGRKA

Homology

[Close]

BLAST of IVF0011755 vs. ExPASy TrEMBL
Match: A0A5A7TNL7 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G00460 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.4e-25
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIENNPYRKLT 78
           P++ KLSP KPAAGPENLSVNS+LPSREKSRAISYSNIQT IGCSNIREFIENNPYR+LT
Sbjct: 277 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 336

Query: 79  VTRSGGRKA 88
           VTRSGGRKA
Sbjct: 337 VTRSGGRKA 345

[Close]

BLAST of IVF0011755 vs. ExPASy TrEMBL
Match: A0A5A7ULW2 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004710 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.4e-25
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIENNPYRKLT 78
           P++ KLSP KPAAGPENLSVNS+LPSREKSRAISYSNIQT IGCSNIREFIENNPYR+LT
Sbjct: 131 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 190

Query: 79  VTRSGGRKA 88
           VTRSGGRKA
Sbjct: 191 VTRSGGRKA 199

[Close]

BLAST of IVF0011755 vs. ExPASy TrEMBL
Match: A0A5A7SQ80 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold853G00300 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 6.3e-23
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIENNPYRKLT 78
           P++ KLSP +PAA PENLSVNS LPSREKSR ISYSNIQT IGCSNIREFIENNPYR+L 
Sbjct: 146 PQERKLSPTRPAAEPENLSVNSALPSREKSRVISYSNIQTLIGCSNIREFIENNPYRRLA 205

Query: 79  VTRSGGRKA 88
           VTRSGGRKA
Sbjct: 206 VTRSGGRKA 214

[Close]

BLAST of IVF0011755 vs. ExPASy TrEMBL
Match: A0A5A7UMJ9 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold741G00020 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 7.0e-22
Identity = 57/67 (85.07%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 10  GPKRHPLTYPRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFI 69
           G KRHPLTYPRKGKL PNKP A PEN SVNS+LPSREKSRAISYSNIQT IGCSNIREFI
Sbjct: 76  GQKRHPLTYPRKGKLPPNKPTARPENSSVNSVLPSREKSRAISYSNIQTLIGCSNIREFI 135

Query: 70  ENNPYRK 77
           EN   RK
Sbjct: 136 ENPERRK 142

[Close]

BLAST of IVF0011755 vs. ExPASy TrEMBL
Match: A0A5A7UGC7 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G001680 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.3e-20
Identity = 54/69 (78.26%), Postives = 60/69 (86.96%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIENNPYRKLT 78
           P++ KLSP +P A PEN SV S LPS+EKSRAI+YSNIQ  IGCSNIREFIENNPYR+LT
Sbjct: 110 PKERKLSPTRPTARPENPSVKSELPSKEKSRAITYSNIQALIGCSNIREFIENNPYRRLT 169

Query: 79  VTRSGGRKA 88
           VTRSGGRKA
Sbjct: 170 VTRSGGRKA 178

[Close]

BLAST of IVF0011755 vs. NCBI nr
Match: KAA0054655.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 124 bits (312), Expect = 1.15e-33
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIENNPYRKLT 78
           P++ KLSP KPAAGPENLSVNS+LPSREKSRAISYSNIQT IGCSNIREFIENNPYR+LT
Sbjct: 131 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 190

Query: 79  VTRSGGRKA 87
           VTRSGGRKA
Sbjct: 191 VTRSGGRKA 199

[Close]

BLAST of IVF0011755 vs. NCBI nr
Match: KAA0043181.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 124 bits (312), Expect = 3.27e-32
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIENNPYRKLT 78
           P++ KLSP KPAAGPENLSVNS+LPSREKSRAISYSNIQT IGCSNIREFIENNPYR+LT
Sbjct: 277 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 336

Query: 79  VTRSGGRKA 87
           VTRSGGRKA
Sbjct: 337 VTRSGGRKA 345

[Close]

BLAST of IVF0011755 vs. NCBI nr
Match: KAA0032698.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 115 bits (289), Expect = 5.03e-30
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIENNPYRKLT 78
           P++ KLSP +PAA PENLSVNS LPSREKSR ISYSNIQT IGCSNIREFIENNPYR+L 
Sbjct: 146 PQERKLSPTRPAAEPENLSVNSALPSREKSRVISYSNIQTLIGCSNIREFIENNPYRRLA 205

Query: 79  VTRSGGRKA 87
           VTRSGGRKA
Sbjct: 206 VTRSGGRKA 214

[Close]

BLAST of IVF0011755 vs. NCBI nr
Match: KAA0057143.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (279), Expect = 2.02e-27
Identity = 57/67 (85.07%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 10  GPKRHPLTYPRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFI 69
           G KRHPLTYPRKGKL PNKP A PEN SVNS+LPSREKSRAISYSNIQT IGCSNIREFI
Sbjct: 76  GQKRHPLTYPRKGKLPPNKPTARPENSSVNSVLPSREKSRAISYSNIQTLIGCSNIREFI 135

Query: 70  ENNPYRK 76
           EN   RK
Sbjct: 136 ENPERRK 142

[Close]

BLAST of IVF0011755 vs. NCBI nr
Match: KAA0054224.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (269), Expect = 2.07e-27
Identity = 54/69 (78.26%), Postives = 60/69 (86.96%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIENNPYRKLT 78
           P++ KLSP +P A PEN SV S LPS+EKSRAI+YSNIQ  IGCSNIREFIENNPYR+LT
Sbjct: 110 PKERKLSPTRPTARPENPSVKSELPSKEKSRAITYSNIQALIGCSNIREFIENNPYRRLT 169

Query: 79  VTRSGGRKA 87
           VTRSGGRKA
Sbjct: 170 VTRSGGRKA 178

The following BLAST results are available for this feature:

BLAST of IVF0011755 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0011755 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TNL7	1.4e-25	89.86	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7ULW2	1.4e-25	89.86	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7SQ80	6.3e-23	84.06	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7UMJ9	7.0e-22	85.07	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7UGC7	1.3e-20	78.26	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of IVF0011755 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054655.1	1.15e-33	89.86	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0043181.1	3.27e-32	89.86	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0032698.1	5.03e-30	84.06	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0057143.1	2.02e-27	85.07	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0054224.1	2.07e-27	78.26	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0011755 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..38

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0011755.1	IVF0011755.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane