IVF0011193 (gene) Melon (IVF77) v1

Overview
NameIVF0011193
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr04: 10130288 .. 10130455 (+)
RNA-Seq ExpressionIVF0011193
SyntenyIVF0011193
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAATTGTGACGACATTGACGAAGTTAACGAGAGGGACTCCGCATACGCCACCACCACCGCTACAGAAGATATTCAGTACATTGACACGACAACCGAGTGGTCTAACTGGCGCGACGAATTAGCTGAAGCAATGTTCACAGAATGGCAGTTGCGTAATGCTTAA

mRNA sequence

ATGACAAATTGTGACGACATTGACGAAGTTAACGAGAGGGACTCCGCATACGCCACCACCACCGCTACAGAAGATATTCAGTACATTGACACGACAACCGAGTGGTCTAACTGGCGCGACGAATTAGCTGAAGCAATGTTCACAGAATGGCAGTTGCGTAATGCTTAA

Coding sequence (CDS)

ATGACAAATTGTGACGACATTGACGAAGTTAACGAGAGGGACTCCGCATACGCCACCACCACCGCTACAGAAGATATTCAGTACATTGACACGACAACCGAGTGGTCTAACTGGCGCGACGAATTAGCTGAAGCAATGTTCACAGAATGGCAGTTGCGTAATGCTTAA

Protein sequence

MTNCDDIDEVNERDSAYATTTATEDIQYIDTTTEWSNWRDELAEAMFTEWQLRNA
Homology
BLAST of IVF0011193 vs. ExPASy TrEMBL
Match: A0A5D3BGE3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00040 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 8.9e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1  MTNCDDIDEVNERDSAYATTTATEDIQYIDTTTEWSNWRDELAEAMFTEWQLRNA 56
          MTNCDDIDEVNERDSAYATTTATEDIQYIDTTTEWSNWRDELAEAMFTEWQLRNA
Sbjct: 1  MTNCDDIDEVNERDSAYATTTATEDIQYIDTTTEWSNWRDELAEAMFTEWQLRNA 55

BLAST of IVF0011193 vs. ExPASy TrEMBL
Match: A0A5A7TYT9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold543G00870 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.3e-21
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0

Query: 1  MTNCDDIDEVNERDSAYATTTATEDIQYIDTTTEWSNWRDELAEAMFTEWQLR 54
          MTNCDDIDEVNERDSAYATTTATEDIQYIDTTTEWSNWRDELAEAMFTEWQLR
Sbjct: 1  MTNCDDIDEVNERDSAYATTTATEDIQYIDTTTEWSNWRDELAEAMFTEWQLR 53

BLAST of IVF0011193 vs. ExPASy TrEMBL
Match: A0A5D3BDZ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00280 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-16
Identity = 44/55 (80.00%), Postives = 50/55 (90.91%), Query Frame = 0

Query: 1  MTNCDDIDEVNERDSAYATTTATEDIQYIDTTTEWSNWRDELAEAMFTEWQLRNA 56
          MT CDDID+V+E DSAYATTTA+EDI YI+TT EWS WRDELAE+MFT+WQLRNA
Sbjct: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55

BLAST of IVF0011193 vs. ExPASy TrEMBL
Match: A0A5A7U2Y8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00810 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.6e-16
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 0

Query: 1  MTNCDDIDEVNERDSAYATTTATEDIQYIDTTTEWSNWRDELAEAMFTEWQLRNA 56
          MTNCDDIDEV+E DS YATTTATEDIQ+I+T  EWSNW D+LA+AMF EWQLRNA
Sbjct: 1  MTNCDDIDEVDEGDSTYATTTATEDIQFINTAIEWSNWCDDLAKAMFIEWQLRNA 55

BLAST of IVF0011193 vs. ExPASy TrEMBL
Match: A0A5A7V4Q8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00240 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.7e-16
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 0

Query: 1   MTNCDDIDEVNERDSAYATTTATEDIQYIDTTTEWSNWRDELAEAMFTEWQLRNA 56
           MT CDDID+ +E DS YATTTA+EDIQYI+TT EWS WRD+LAE+MFTEWQLRNA
Sbjct: 53  MTYCDDIDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 107

BLAST of IVF0011193 vs. NCBI nr
Match: TYJ97711.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 113 bits (282), Expect = 1.85e-31
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1  MTNCDDIDEVNERDSAYATTTATEDIQYIDTTTEWSNWRDELAEAMFTEWQLRNA 55
          MTNCDDIDEVNERDSAYATTTATEDIQYIDTTTEWSNWRDELAEAMFTEWQLRNA
Sbjct: 1  MTNCDDIDEVNERDSAYATTTATEDIQYIDTTTEWSNWRDELAEAMFTEWQLRNA 55

BLAST of IVF0011193 vs. NCBI nr
Match: KAA0046501.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (272), Expect = 1.25e-28
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0

Query: 1  MTNCDDIDEVNERDSAYATTTATEDIQYIDTTTEWSNWRDELAEAMFTEWQLR 53
          MTNCDDIDEVNERDSAYATTTATEDIQYIDTTTEWSNWRDELAEAMFTEWQLR
Sbjct: 1  MTNCDDIDEVNERDSAYATTTATEDIQYIDTTTEWSNWRDELAEAMFTEWQLR 53

BLAST of IVF0011193 vs. NCBI nr
Match: KAA0054051.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 2.29e-23
Identity = 44/55 (80.00%), Postives = 50/55 (90.91%), Query Frame = 0

Query: 1  MTNCDDIDEVNERDSAYATTTATEDIQYIDTTTEWSNWRDELAEAMFTEWQLRNA 55
          MT CDDID+V+E DSAYATTTA+EDI YI+TT EWS WRDELAE+MFT+WQLRNA
Sbjct: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55

BLAST of IVF0011193 vs. NCBI nr
Match: KAA0049604.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15962.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 1.06e-22
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 0

Query: 1  MTNCDDIDEVNERDSAYATTTATEDIQYIDTTTEWSNWRDELAEAMFTEWQLRNA 55
          MTNCDDIDEV+E DS YATTTATEDIQ+I+T  EWSNW D+LA+AMF EWQLRNA
Sbjct: 1  MTNCDDIDEVDEGDSTYATTTATEDIQFINTAIEWSNWCDDLAKAMFIEWQLRNA 55

BLAST of IVF0011193 vs. NCBI nr
Match: KAA0062284.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 5.37e-22
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 0

Query: 1   MTNCDDIDEVNERDSAYATTTATEDIQYIDTTTEWSNWRDELAEAMFTEWQLRNA 55
           MT CDDID+ +E DS YATTTA+EDIQYI+TT EWS WRD+LAE+MFTEWQLRNA
Sbjct: 53  MTYCDDIDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BGE38.9e-23100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TYT91.3e-21100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BDZ01.2e-1680.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U2Y83.6e-1680.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V4Q84.7e-1678.18Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
TYJ97711.11.85e-31100.00retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0046501.11.25e-28100.00retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0054051.12.29e-2380.00retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon p... [more]
KAA0049604.11.06e-2280.00retrotransposon protein [Cucumis melo var. makuwa] >TYK15962.1 retrotransposon p... [more]
KAA0062284.15.37e-2278.18retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0011193.2IVF0011193.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding