IVF0011119 (gene) Melon (IVF77) v1

Overview
NameIVF0011119
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionHexosyltransferase
Locationchr01: 23970699 .. 23970983 (+)
RNA-Seq ExpressionIVF0011119
SyntenyIVF0011119
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTGGGTTACAAATAAAACCGGGTCGAAGCATAGCACGAGCCGAGCGTATTCATCAGGCGCGCGGGTCGGAACCAAGAATTGAATCGAATCCAGGTAGGCGTGCGAGGCATCCGAACTGTTTAAGGTTCACGTGTCGCGCAAGTAAGGAGAACACGTGGCGGGCGTCGGGCATATGCGAGGAACCGGGTCACGAACCGGTTTCTAGGTTGGTTCTGGGTCGACAATTCGAGTCTGATCATCTGATTCGGGTGTGTGAGCCATTTTTCTCCGATAAAAGTTGA

mRNA sequence

ATGCGTGGGTTACAAATAAAACCGGGTCGAAGCATAGCACGAGCCGAGCGTATTCATCAGGCGCGCGGGTCGGAACCAAGAATTGAATCGAATCCAGGTAGGCGTGCGAGGCATCCGAACTGTTTAAGGTTCACGTGTCGCGCAAGTAAGGAGAACACGTGGCGGGCGTCGGGCATATGCGAGGAACCGGGTCACGAACCGGTTTCTAGGTTGGTTCTGGGTCGACAATTCGAGTCTGATCATCTGATTCGGGTGTGTGAGCCATTTTTCTCCGATAAAAGTTGA

Coding sequence (CDS)

ATGCGTGGGTTACAAATAAAACCGGGTCGAAGCATAGCACGAGCCGAGCGTATTCATCAGGCGCGCGGGTCGGAACCAAGAATTGAATCGAATCCAGGTAGGCGTGCGAGGCATCCGAACTGTTTAAGGTTCACGTGTCGCGCAAGTAAGGAGAACACGTGGCGGGCGTCGGGCATATGCGAGGAACCGGGTCACGAACCGGTTTCTAGGTTGGTTCTGGGTCGACAATTCGAGTCTGATCATCTGATTCGGGTGTGTGAGCCATTTTTCTCCGATAAAAGTTGA

Protein sequence

MRGLQIKPGRSIARAERIHQARGSEPRIESNPGRRARHPNCLRFTCRASKENTWRASGICEEPGHEPVSRLVLGRQFESDHLIRVCEPFFSDKS
Homology
[Close]
BLAST of IVF0011119 vs. ExPASy TrEMBL
Match: A0A5A7SNZ0 (Hexosyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold263G00500 PE=3 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 4.3e-41
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MRGLQIKPGRSIARAERIHQARGSEPRIESNPGRRARHPNCLRFTCRASKENTWRASGIC 60
          MRGLQIKPGRSIARAERIHQARGSEPRIESNPGRRARHPNCLRFTCRASKENTWRASGIC
Sbjct: 1  MRGLQIKPGRSIARAERIHQARGSEPRIESNPGRRARHPNCLRFTCRASKENTWRASGIC 60

Query: 61 EEPGHEPVSRLVLGRQFESDHLIR 85
          EEPGHEPVSRLVLGRQFESDHLIR
Sbjct: 61 EEPGHEPVSRLVLGRQFESDHLIR 84

[Close]
BLAST of IVF0011119 vs. NCBI nr
Match: KAA0026145.1 (galacturonosyltransferase 8 [Cucumis melo var. makuwa] >TYK11605.1 galacturonosyltransferase 8 [Cucumis melo var. makuwa])

HSP 1 Score: 175 bits (444), Expect = 1.15e-49
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MRGLQIKPGRSIARAERIHQARGSEPRIESNPGRRARHPNCLRFTCRASKENTWRASGIC 60
          MRGLQIKPGRSIARAERIHQARGSEPRIESNPGRRARHPNCLRFTCRASKENTWRASGIC
Sbjct: 1  MRGLQIKPGRSIARAERIHQARGSEPRIESNPGRRARHPNCLRFTCRASKENTWRASGIC 60

Query: 61 EEPGHEPVSRLVLGRQFESDHLIR 84
          EEPGHEPVSRLVLGRQFESDHLIR
Sbjct: 61 EEPGHEPVSRLVLGRQFESDHLIR 84

The following BLAST results are available for this feature:
BLAST of IVF0011119 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0011119 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SNZ04.3e-41100.00Hexosyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold263G0... [more]
BLAST of IVF0011119 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0026145.11.15e-49100.00galacturonosyltransferase 8 [Cucumis melo var. makuwa] >TYK11605.1 galacturonosy... [more]
BLAST of IVF0011119 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..36

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0011119.1IVF0011119.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071555 cell wall organization
biological_process GO:0045489 pectin biosynthetic process
cellular_component GO:0000139 Golgi membrane
molecular_function GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity