IVF0011060 (gene) Melon (IVF77) v1

Overview


Name	IVF0011060
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon 17.6
Location	chr04: 22196204 .. 22196446 (+)
RNA-Seq Expression	IVF0011060
Synteny	IVF0011060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATTTGGTCTTTGTAATGCACCGGGCACATTCCAACGTTGCATGATGAGCATATTTTCCGACTTTATTGAAAAATGCATTGAAGTTTTCATGGATGATTCCACAGTTTATGGTGATAGTTTTGATGAATGTTTAGCCAGTTTAGAATTAATTCTAAATAGATGAATAGAAACTAACCTTGTCTTGAATTATGAAAAGTGTCATTTCATGGTGTCTCATGGTATAGTTTTAGGATGTTAG

mRNA sequence

ATGCCATTTGGTCTTTGTAATGCACCGGGCACATTCCAACGTTGCATGATGAGCATATTTTCCGACTTTATTGAAAAATGCATTGAAGTTTTCATGGATGATTCCACAGTTTATGAAACTAACCTTGTCTTGAATTATGAAAAGTGTCATTTCATGGTGTCTCATGGTATAGTTTTAGGATGTTAG

Coding sequence (CDS)

ATGCCATTTGGTCTTTGTAATGCACCGGGCACATTCCAACGTTGCATGATGAGCATATTTTCCGACTTTATTGAAAAATGCATTGAAGTTTTCATGGATGATTCCACAGTTTATGAAACTAACCTTGTCTTGAATTATGAAAAGTGTCATTTCATGGTGTCTCATGGTATAGTTTTAGGATGTTAG

Protein sequence

MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVYETNLVLNYEKCHFMVSHGIVLGC

Homology

[Close]

BLAST of IVF0011060 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.1e-05
Identity = 28/79 (35.44%), Postives = 36/79 (45.57%), Query Frame = 0


Query: 1   MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVYET-------------------N 60
           MPFGL NAP TFQRCM +I    + K   V++DD  ++ T                   N
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

[Close]

BLAST of IVF0011060 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.1e-05
Identity = 29/79 (36.71%), Postives = 35/79 (44.30%), Query Frame = 0


Query: 1   MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVYET-------------------N 60
           MPFGL NAP TFQRCM  I    + K   V++DD  V+ T                   N
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

[Close]

BLAST of IVF0011060 vs. ExPASy TrEMBL
Match: A0A151TW73 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cajanus cajan OX=3821 GN=KK1_010562 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.4e-21
Identity = 52/79 (65.82%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 1  MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVY-------------------ETN 60
          MPFGLCNAPGTFQRCM+SIFSD++E CIEVFMDD T+Y                   ETN
Sbjct: 1  MPFGLCNAPGTFQRCMLSIFSDYLENCIEVFMDDFTIYGSSFDACLDSLDTVLNRCIETN 60

[Close]

BLAST of IVF0011060 vs. ExPASy TrEMBL
Match: A0A6P8DCT8 (Reverse transcriptase OS=Punica granatum OX=22663 GN=LOC116204368 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.1e-21
Identity = 54/79 (68.35%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 1    MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVY-------------------ETN 60
            MPFGLC+APGTFQRCMMSIFSD IE CIEVFMDD TVY                   E+N
Sbjct: 1075 MPFGLCDAPGTFQRCMMSIFSDMIENCIEVFMDDFTVYGDSFDRCLANLSKVLHRCIESN 1134

[Close]

BLAST of IVF0011060 vs. ExPASy TrEMBL
Match: A0A392P218 (Reverse transcriptase domain-containing protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 9.3e-21
Identity = 54/79 (68.35%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 1   MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVY-------------------ETN 60
           MPFGLCNAPGTFQRCM+SIFSDFIE C+EVFMDD TVY                   ETN
Sbjct: 133 MPFGLCNAPGTFQRCMISIFSDFIENCMEVFMDDFTVYGSSFDACLQSLNLILERCIETN 192

[Close]

BLAST of IVF0011060 vs. ExPASy TrEMBL
Match: A0A2I0ICA2 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_037987 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 9.3e-21
Identity = 53/79 (67.09%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 1   MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVY-------------------ETN 60
           MPFGLC+APGTFQRCMMSIFSD IE CIEVFMDD TVY                   E+N
Sbjct: 47  MPFGLCDAPGTFQRCMMSIFSDMIENCIEVFMDDFTVYGDSFDCCLANLSKVLHRCIESN 106

[Close]

BLAST of IVF0011060 vs. ExPASy TrEMBL
Match: A0A151T1R1 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cajanus cajan OX=3821 GN=KK1_023407 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.6e-20
Identity = 53/79 (67.09%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 1  MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVY-------------------ETN 60
          MPFGLCNAPGTFQRCM+SIFSDF+E CIEVFMDD TVY                   ETN
Sbjct: 1  MPFGLCNAPGTFQRCMLSIFSDFLENCIEVFMDDFTVYGSSFDACLDSLDRVLNRCIETN 60

[Close]

BLAST of IVF0011060 vs. NCBI nr
Match: KYP78693.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cajanus cajan])

HSP 1 Score: 108 bits (269), Expect = 5.49e-29
Identity = 52/79 (65.82%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 1  MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVY-------------------ETN 60
          MPFGLCNAPGTFQRCM+SIFSDF+E CIEVFMDD T+Y                   ETN
Sbjct: 1  MPFGLCNAPGTFQRCMLSIFSDFLENCIEVFMDDFTIYGSSFDACLDSLDRVLNRCIETN 60

[Close]

BLAST of IVF0011060 vs. NCBI nr
Match: KYP71307.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cajanus cajan])

HSP 1 Score: 110 bits (275), Expect = 3.38e-28
Identity = 52/79 (65.82%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 1  MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVY-------------------ETN 60
          MPFGLCNAPGTFQRCM+SIFSD++E CIEVFMDD T+Y                   ETN
Sbjct: 1  MPFGLCNAPGTFQRCMLSIFSDYLENCIEVFMDDFTIYGSSFDACLDSLDTVLNRCIETN 60

[Close]

BLAST of IVF0011060 vs. NCBI nr
Match: KYP49023.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cajanus cajan])

HSP 1 Score: 107 bits (267), Expect = 4.14e-28
Identity = 52/79 (65.82%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 1   MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVY-------------------ETN 60
           MPFGLCNAPGTFQRCM+SIFS+F+E CIEVFMDD TVY                   ETN
Sbjct: 47  MPFGLCNAPGTFQRCMLSIFSEFLENCIEVFMDDFTVYGSSFDTCLDSLDRVLNRCIETN 106

[Close]

BLAST of IVF0011060 vs. NCBI nr
Match: RYA56915.1 (hypothetical protein DD596_25350, partial [Enterobacter cloacae complex sp. 4DZ3-28B])

HSP 1 Score: 108 bits (270), Expect = 6.65e-28
Identity = 53/79 (67.09%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 1   MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVY-------------------ETN 60
           MPFGLCNAPGTFQRCM+SIFSDF+E CIEVFMDD TVY                   ETN
Sbjct: 27  MPFGLCNAPGTFQRCMISIFSDFLENCIEVFMDDFTVYGSSFDICLDSLEKVLNRCIETN 86

[Close]

BLAST of IVF0011060 vs. NCBI nr
Match: KYP30887.1 (Retrovirus-related Pol polyprotein from transposon 17.6, partial [Cajanus cajan])

HSP 1 Score: 107 bits (267), Expect = 7.05e-28
Identity = 52/79 (65.82%), Postives = 55/79 (69.62%), Query Frame = 0


Query: 1  MPFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDSTVY-------------------ETN 60
          MPFGLCNAPGTFQRCMMSIF+D +E CIEVFMDD +VY                   ETN
Sbjct: 18 MPFGLCNAPGTFQRCMMSIFADLLEHCIEVFMDDFSVYGSSFDACLDSLTRVLDRCIETN 77

The following BLAST results are available for this feature:

BLAST of IVF0011060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	1.1e-05	35.44	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	1.1e-05	36.71	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]

BLAST of IVF0011060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A151TW73	5.4e-21	65.82	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cajanus cajan OX=3821...	[more]
A0A6P8DCT8	7.1e-21	68.35	Reverse transcriptase OS=Punica granatum OX=22663 GN=LOC116204368 PE=4 SV=1	[more]
A0A392P218	9.3e-21	68.35	Reverse transcriptase domain-containing protein (Fragment) OS=Trifolium medium O...	[more]
A0A2I0ICA2	9.3e-21	67.09	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_037987 PE=4 SV=1	[more]
A0A151T1R1	1.6e-20	67.09	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cajanus cajan OX=3821...	[more]

BLAST of IVF0011060 vs. NCBI nr


Match Name	E-value	Identity	Description
KYP78693.1	5.49e-29	65.82	Retrovirus-related Pol polyprotein from transposon 17.6 [Cajanus cajan]	[more]
KYP71307.1	3.38e-28	65.82	Retrovirus-related Pol polyprotein from transposon 17.6 [Cajanus cajan]	[more]
KYP49023.1	4.14e-28	65.82	Retrovirus-related Pol polyprotein from transposon 17.6 [Cajanus cajan]	[more]
RYA56915.1	6.65e-28	67.09	hypothetical protein DD596_25350, partial [Enterobacter cloacae complex sp. 4DZ3...	[more]
KYP30887.1	7.05e-28	65.82	Retrovirus-related Pol polyprotein from transposon 17.6, partial [Cajanus cajan]	[more]

BLAST of IVF0011060 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..61 e-value: 6.1E-13 score: 50.7
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0011060.2	IVF0011060.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding
molecular_function	GO:0016772	transferase activity, transferring phosphorus-containing groups