IVF0010888 (gene) Melon (IVF77) v1

Overview


Name	IVF0010888
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Serine-rich protein-related
Location	chr02: 12500723 .. 12501427 (+)
RNA-Seq Expression	IVF0010888
Synteny	IVF0010888

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAAAAAACCTCAAACTCCAAAACACCAATCTTGTTCCACACAGTTTTCCCTAAAAATCAGTCCACGAGAAAGAATTAATCACTCCCAAATTTTCAATTCAATGGCCTCAAAATCTGGATCCTCCACTCACAAATTCCCGTCCACCGCCGGTTCACGGAAGTGTCTCTGTTCTCCTACCACCCATCCCGGCTCTTTCCGCTGCAGTTTTCACCGCACCCGCCACAAGATCTCTTCCACTAGGTCTTCATCTTCTGCGGAGTTGGAGCTTGCCAAGGCTAATGCCTTGAGAGCATTTCTGCTCCAGATGATTAAGCCGTCCAGTAACGATGTTCAACGCCGGAGGAATTTTCATCCTCGACCTTCCAGGTTTTGTTTGATGAACGATCATGGAACTGGATTGACTGTTTCTTGAAATCCATTTTTTTAGTTGGTTAATCAGTCGTACGTACGTAGTAGATCTGGATATGTCTGTTTTTGTTCGTGATTTCGATCTTCTTCCGTCGCTGAATTTCCAGATGAGTTTGTAGATACAGTACTCCGTTTGTGTACAGATCATTTCGAGAGGGCATTGGATCGATCTTGATGACTCTACAAGTCTTTCTTGAAATAGAATTAGTTTCTTTTTTTCTTTTTTCTTTTTTTTTTCTTGCATCTTTTCCTTTGTTTCTTCTTCTCTGATTCTTGCAACTGGAAAATGCAAGC

mRNA sequence

AAAGAAAAAACCTCAAACTCCAAAACACCAATCTTGTTCCACACAGTTTTCCCTAAAAATCAGTCCACGAGAAAGAATTAATCACTCCCAAATTTTCAATTCAATGGCCTCAAAATCTGGATCCTCCACTCACAAATTCCCGTCCACCGCCGGTTCACGGAAGTGTCTCTGTTCTCCTACCACCCATCCCGGCTCTTTCCGCTGCAGTTTTCACCGCACCCGCCACAAGATCTCTTCCACTAGGTCTTCATCTTCTGCGGAGTTGGAGCTTGCCAAGGCTAATGCCTTGAGAGCATTTCTGCTCCAGATGATTAAGCCGTCCAGTAACGATGTTCAACGCCGGAGGAATTTTCATCCTCGACCTTCCAGGTTTTGTTTGATGAACGATCATGGAACTGGATTGACTGTTTCTTGAAATCCATTTTTTTAGTTGGTTAATCAGTCGTACGTACGTAGTAGATCTGGATATGTCTGTTTTTGTTCGTGATTTCGATCTTCTTCCGTCGCTGAATTTCCAGATGAGTTTGTAGATACAGTACTCCGTTTGTGTACAGATCATTTCGAGAGGGCATTGGATCGATCTTGATGACTCTACAAGTCTTTCTTGAAATAGAATTAGTTTCTTTTTTTCTTTTTTCTTTTTTTTTTCTTGCATCTTTTCCTTTGTTTCTTCTTCTCTGATTCTTGCAACTGGAAAATGCAAGC

Coding sequence (CDS)

ATGGCCTCAAAATCTGGATCCTCCACTCACAAATTCCCGTCCACCGCCGGTTCACGGAAGTGTCTCTGTTCTCCTACCACCCATCCCGGCTCTTTCCGCTGCAGTTTTCACCGCACCCGCCACAAGATCTCTTCCACTAGGTCTTCATCTTCTGCGGAGTTGGAGCTTGCCAAGGCTAATGCCTTGAGAGCATTTCTGCTCCAGATGATTAAGCCGTCCAGTAACGATGTTCAACGCCGGAGGAATTTTCATCCTCGACCTTCCAGGTTTTGTTTGATGAACGATCATGGAACTGGATTGACTGTTTCTTGA

Protein sequence

MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSSSSAELELAKANALRAFLLQMIKPSSNDVQRRRNFHPRPSRFCLMNDHGTGLTVS

Homology

[Close]

BLAST of IVF0010888 vs. ExPASy TrEMBL
Match: A0A5A7U6S1 (Serine-rich protein-related OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25870G00010 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.2e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSSSSAELELAKAN 60
           MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSSSSAELELAKAN
Sbjct: 1   MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSSSSAELELAKAN 60

Query: 61  ALRAFLLQMIKPSSNDVQRRRNFHPRPSRFCLMNDHGTGLTVS 104
           ALRAFLLQMIKPSSNDVQRRRNFHPRPSRFCLMNDHGTGLTVS
Sbjct: 61  ALRAFLLQMIKPSSNDVQRRRNFHPRPSRFCLMNDHGTGLTVS 103

[Close]

BLAST of IVF0010888 vs. ExPASy TrEMBL
Match: A0A1S3B8Q0 (uncharacterized protein LOC103487396 OS=Cucumis melo OX=3656 GN=LOC103487396 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.2e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSSSSAELELAKAN 60
           MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSSSSAELELAKAN
Sbjct: 1   MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSSSSAELELAKAN 60

Query: 61  ALRAFLLQMIKPSSNDVQRRRNFHPRPSRFCLMNDHGTGLTVS 104
           ALRAFLLQMIKPSSNDVQRRRNFHPRPSRFCLMNDHGTGLTVS
Sbjct: 61  ALRAFLLQMIKPSSNDVQRRRNFHPRPSRFCLMNDHGTGLTVS 103

[Close]

BLAST of IVF0010888 vs. ExPASy TrEMBL
Match: A0A0A0LYY6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264520 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.5e-42
Identity = 92/110 (83.64%), Postives = 97/110 (88.18%), Query Frame = 0


Query: 1   MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSSSS-------AE 60
           MASKSGSSTHKFP+   SRKCLCSPTTHPGSFRCSFHR RHKISS+RSSSS       A+
Sbjct: 1   MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD 60

Query: 61  LELAKANALRAFLLQMIKPSSNDVQRRRNFHPRPSRFCLMNDHGTGLTVS 104
           LELAKANALR+FLLQMIKPSSND+QRRRNFHPRPSRFCLMNDH TGL VS
Sbjct: 61  LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS 110

[Close]

BLAST of IVF0010888 vs. ExPASy TrEMBL
Match: A0A5D3CER3 (Serine-rich protein-related OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00300 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.2e-39
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSSSSAELELAKAN 60
          MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSSSSAELELAKAN
Sbjct: 1  MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSSSSAELELAKAN 60

Query: 61 ALRAFLLQMIKPSSNDVQRRRNFHPRP 88
          ALRAFLLQMIKPSSNDVQRRRNFHPRP
Sbjct: 61 ALRAFLLQMIKPSSNDVQRRRNFHPRP 87

[Close]

BLAST of IVF0010888 vs. ExPASy TrEMBL
Match: A0A6J1EG01 (uncharacterized protein LOC111433980 OS=Cucurbita moschata OX=3662 GN=LOC111433980 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 6.8e-32
Identity = 79/112 (70.54%), Postives = 86/112 (76.79%), Query Frame = 0


Query: 1   MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSSS------SAEL 60
           MA+KS S   K  S   SRKCLCSPTTHPGSFRCSFHR R K S+  SSS      SA+L
Sbjct: 1   MATKSRSVNSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSITAITSAQL 60

Query: 61  EL---AKANALRAFLLQMIKPSSNDVQRRRNFHPRPSRFCLMNDHGTGLTVS 104
           EL   AKANA+RAFLL +I+PSSND+QRRRNFHPRPSRFCLMN HGTGL VS
Sbjct: 61  ELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFHPRPSRFCLMNKHGTGLAVS 112

[Close]

BLAST of IVF0010888 vs. NCBI nr
Match: XP_008443918.1 (PREDICTED: uncharacterized protein LOC103487396 [Cucumis melo] >KAA0050057.1 Serine-rich protein-related [Cucumis melo var. makuwa] >TYK14152.1 Serine-rich protein-related [Cucumis melo var. makuwa])

HSP 1 Score: 209 bits (532), Expect = 3.90e-68
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSSSSAELELAKAN 60
           MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSSSSAELELAKAN
Sbjct: 1   MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSSSSAELELAKAN 60

Query: 61  ALRAFLLQMIKPSSNDVQRRRNFHPRPSRFCLMNDHGTGLTVS 103
           ALRAFLLQMIKPSSNDVQRRRNFHPRPSRFCLMNDHGTGLTVS
Sbjct: 61  ALRAFLLQMIKPSSNDVQRRRNFHPRPSRFCLMNDHGTGLTVS 103

[Close]

BLAST of IVF0010888 vs. NCBI nr
Match: TYK10353.1 (Serine-rich protein-related [Cucumis melo var. makuwa])

HSP 1 Score: 175 bits (443), Expect = 1.78e-54
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSSSSAELELAKAN 60
          MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSSSSAELELAKAN
Sbjct: 1  MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSSSSAELELAKAN 60

Query: 61 ALRAFLLQMIKPSSNDVQRRRNFHPRP 87
          ALRAFLLQMIKPSSNDVQRRRNFHPRP
Sbjct: 61 ALRAFLLQMIKPSSNDVQRRRNFHPRP 87

[Close]

BLAST of IVF0010888 vs. NCBI nr
Match: KAE8653030.1 (hypothetical protein Csa_019924 [Cucumis sativus])

HSP 1 Score: 157 bits (398), Expect = 1.11e-47
Identity = 80/96 (83.33%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 1  MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSSSS-------AE 60
          MASKSGSSTHKFP+   SRKCLCSPTTHPGSFRCSFHR RHKISS+RSSSS       A+
Sbjct: 1  MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD 60

Query: 61 LELAKANALRAFLLQMIKPSSNDVQRRRNFHPRPSR 89
          LELAKANALR+FLLQMIKPSSND+QRRRNFHPRPSR
Sbjct: 61 LELAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSR 96

[Close]

BLAST of IVF0010888 vs. NCBI nr
Match: XP_023515429.1 (uncharacterized protein LOC111779591 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 150 bits (378), Expect = 1.58e-44
Identity = 79/112 (70.54%), Postives = 88/112 (78.57%), Query Frame = 0


Query: 1   MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSSSS------AEL 60
           MASKSGSS  K  S  GSRKCLCSPTTHPGSFRCS HR R K+S+  SSSS      A+L
Sbjct: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60

Query: 61  EL---AKANALRAFLLQMIKPSSNDVQRRRNFHPRPSRFCLMNDHGTGLTVS 103
           +L   AKANALR+FLLQ+I PSS D+QRRRNF P+PSRFCLMN+HGTGL VS
Sbjct: 61  KLTMLAKANALRSFLLQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 112

[Close]

BLAST of IVF0010888 vs. NCBI nr
Match: XP_022927032.1 (uncharacterized protein LOC111433980 [Cucurbita moschata] >KAG7021749.1 hypothetical protein SDJN02_15476, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149 bits (375), Expect = 4.53e-44
Identity = 79/112 (70.54%), Postives = 86/112 (76.79%), Query Frame = 0


Query: 1   MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSSSS------AEL 60
           MA+KS S   K  S   SRKCLCSPTTHPGSFRCSFHR R K S+  SSSS      A+L
Sbjct: 1   MATKSRSVNSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSITAITSAQL 60

Query: 61  EL---AKANALRAFLLQMIKPSSNDVQRRRNFHPRPSRFCLMNDHGTGLTVS 103
           EL   AKANA+RAFLL +I+PSSND+QRRRNFHPRPSRFCLMN HGTGL VS
Sbjct: 61  ELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFHPRPSRFCLMNKHGTGLAVS 112

[Close]

BLAST of IVF0010888 vs. TAIR 10
Match: AT5G11090.1 (serine-rich protein-related )

HSP 1 Score: 61.2 bits (147), Expect = 5.5e-10
Identity = 35/92 (38.04%), Postives = 52/92 (56.52%), Query Frame = 0


Query: 18  SRKCLCSPTTHPGSFRCSFHR-------------TRHKISSTRS---SSSAELELAKANA 77
           SR+C+CSPTTHPGSFRCS H+             T + ++  RS   +S   +   +   
Sbjct: 120 SRRCMCSPTTHPGSFRCSLHKNVANPHGQGTASYTTNGLNMRRSAMTNSLVRIGGVEGEW 179

Query: 78  LRAFLLQMIKPSSNDVQRRRNFHPRPSRFCLM 94
           +R  L  +I+PSS+ ++RR  + PRPSR  +M
Sbjct: 180 VRRALTTLIRPSSHHLKRRAAYQPRPSRLSIM 211

[Close]

BLAST of IVF0010888 vs. TAIR 10
Match: AT5G20370.1 (serine-rich protein-related )

HSP 1 Score: 59.3 bits (142), Expect = 2.1e-09
Identity = 42/102 (41.18%), Postives = 50/102 (49.02%), Query Frame = 0


Query: 19  RKCLCSPTTHPGSFRCSFH-RTRHKISSTRSSSSAE-----------------LELAKAN 78
           RKCLCSPTTHPGSFRCSFH R  H+ S T +SS+ +                  +LA  N
Sbjct: 69  RKCLCSPTTHPGSFRCSFHRRLEHEKSKTLASSTVKRNNRGDNTIRVNVGLNLRKLALMN 128

Query: 79  AL------------RAFLLQMIKPSSNDVQRRRNFHPRPSRF 91
           +L            R+    + KPSS    RR  F PR SRF
Sbjct: 129 SLAKIGSVEAERFRRSLAANLAKPSSLHSHRRPEFRPRLSRF 170

[Close]

BLAST of IVF0010888 vs. TAIR 10
Match: AT5G25280.1 (serine-rich protein-related )

HSP 1 Score: 58.5 bits (140), Expect = 3.6e-09
Identity = 38/110 (34.55%), Postives = 59/110 (53.64%), Query Frame = 0


Query: 1   MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHR-------------TRHKISSTR 60
           ++S   S+ HK P +   R+C+CSPTTHPGSFRCS H+             T + ++  R
Sbjct: 108 VSSNKPSNHHKIPDS--RRRCMCSPTTHPGSFRCSLHKNVANPHGQGTASYTTNGLNMRR 167

Query: 61  S---SSSAELELAKANALRAFLLQMIKPSSNDVQRRRNFHPRPSRFCLMN 95
           S   +S   +   +   +R  L  +I+PSS+ ++RR  + PR SR   M+
Sbjct: 168 SAMTNSLVRIGGVEGEWVRRALTTLIRPSSHQLKRRSAYEPRRSRLASMS 215

[Close]

BLAST of IVF0010888 vs. TAIR 10
Match: AT5G25280.2 (serine-rich protein-related )

HSP 1 Score: 58.5 bits (140), Expect = 3.6e-09
Identity = 38/110 (34.55%), Postives = 59/110 (53.64%), Query Frame = 0


Query: 1   MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHR-------------TRHKISSTR 60
           ++S   S+ HK P +   R+C+CSPTTHPGSFRCS H+             T + ++  R
Sbjct: 108 VSSNKPSNHHKIPDS--RRRCMCSPTTHPGSFRCSLHKNVANPHGQGTASYTTNGLNMRR 167

Query: 61  S---SSSAELELAKANALRAFLLQMIKPSSNDVQRRRNFHPRPSRFCLMN 95
           S   +S   +   +   +R  L  +I+PSS+ ++RR  + PR SR   M+
Sbjct: 168 SAMTNSLVRIGGVEGEWVRRALTTLIRPSSHQLKRRSAYEPRRSRLASMS 215

[Close]

BLAST of IVF0010888 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related )

HSP 1 Score: 43.5 bits (101), Expect = 1.2e-04
Identity = 20/45 (44.44%), Postives = 28/45 (62.22%), Query Frame = 0


Query: 6  GSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSSS 51
          G S     S++  + CLC+PTTHPGSFRC +HR    +  +R +S
Sbjct: 50 GGSVGMSKSSSVRQNCLCAPTTHPGSFRCRYHRRNAGLGMSRGTS 94

The following BLAST results are available for this feature:

BLAST of IVF0010888 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0010888 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U6S1	4.2e-50	100.00	Serine-rich protein-related OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3B8Q0	4.2e-50	100.00	uncharacterized protein LOC103487396 OS=Cucumis melo OX=3656 GN=LOC103487396 PE=...	[more]
A0A0A0LYY6	1.5e-42	83.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264520 PE=4 SV=1	[more]
A0A5D3CER3	1.2e-39	100.00	Serine-rich protein-related OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A6J1EG01	6.8e-32	70.54	uncharacterized protein LOC111433980 OS=Cucurbita moschata OX=3662 GN=LOC1114339...	[more]

BLAST of IVF0010888 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443918.1	3.90e-68	100.00	PREDICTED: uncharacterized protein LOC103487396 [Cucumis melo] >KAA0050057.1 Ser...	[more]
TYK10353.1	1.78e-54	100.00	Serine-rich protein-related [Cucumis melo var. makuwa]	[more]
KAE8653030.1	1.11e-47	83.33	hypothetical protein Csa_019924 [Cucumis sativus]	[more]
XP_023515429.1	1.58e-44	70.54	uncharacterized protein LOC111779591 [Cucurbita pepo subsp. pepo]	[more]
XP_022927032.1	4.53e-44	70.54	uncharacterized protein LOC111433980 [Cucurbita moschata] >KAG7021749.1 hypothet...	[more]

BLAST of IVF0010888 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11090.1	5.5e-10	38.04	serine-rich protein-related	[more]
AT5G20370.1	2.1e-09	41.18	serine-rich protein-related	[more]
AT5G25280.1	3.6e-09	34.55	serine-rich protein-related	[more]
AT5G25280.2	3.6e-09	34.55	serine-rich protein-related	[more]
AT3G13227.1	1.2e-04	44.44	serine-rich protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	PANTHER	PTHR33132:SF63	SUBFAMILY NOT NAMED	coord: 13..97
None	No IPR available	PANTHER	PTHR33132	OSJNBB0118P14.9 PROTEIN	coord: 13..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0010888.1	IVF0010888.1	mRNA