IVF0010604 (gene) Melon (IVF77) v1

Overview


Name	IVF0010604
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	26S proteasome regulatory subunit 8
Location	chr02: 14307310 .. 14307578 (-)
RNA-Seq Expression	IVF0010604
Synteny	IVF0010604

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCCAATGCGAGGGATCAACTTGAAAGGGATTGTTGAGAAGATGAATGGTGCATCCGATGCTGAAGTTAAGGTCAGTTAGATTTTTACACAAAACATTCCTATTTTTTCTACTTCAGGTGGACAAACTTTAATGTCAATCTTGTTTCATCTTTTCAGGCTGTTTGCACAGAAGTTGGAATGTTTGCTTTAAGAGAAAGAAGGGTTCATGTGACACAAGAAGATTTCGAGATAGCAATTGCAAAGGTTATGAAGAAAGACAAATAA

mRNA sequence

ATGAATCCAATGCGAGGGATCAACTTGAAAGGGATTGTTGAGAAGATGAATGGTGCATCCGATGCTGAAGTTAAGGCTGTTTGCACAGAAGTTGGAATGTTTGCTTTAAGAGAAAGAAGGGTTCATGTGACACAAGAAGATTTCGAGATAGCAATTGCAAAGGTTATGAAGAAAGACAAATAA

Coding sequence (CDS)

ATGAATCCAATGCGAGGGATCAACTTGAAAGGGATTGTTGAGAAGATGAATGGTGCATCCGATGCTGAAGTTAAGGCTGTTTGCACAGAAGTTGGAATGTTTGCTTTAAGAGAAAGAAGGGTTCATGTGACACAAGAAGATTTCGAGATAGCAATTGCAAAGGTTATGAAGAAAGACAAATAA

Protein sequence

MNPMRGINLKGIVEKMNGASDAEVKAVCTEVGMFALRERRVHVTQEDFEIAIAKVMKKDK

Homology

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BLAST of IVF0010604 vs. ExPASy Swiss-Prot
Match: Q9C5U3 (26S proteasome regulatory subunit 8 homolog A OS=Arabidopsis thaliana OX=3702 GN=RPT6A PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 6.7e-21
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1   MNPMRGINLKGIVEKMNGASDAEVKAVCTEVGMFALRERRVHVTQEDFEIAIAKVMKKD 60
           MN MRGI+LK I EKMNGAS AE+KAVCTE GMFALRERRVHVTQEDFE+A+AKVMKKD
Sbjct: 349 MNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKD 407

[Close]

BLAST of IVF0010604 vs. ExPASy Swiss-Prot
Match: Q94BQ2 (26S proteasome regulatory subunit 8 homolog B OS=Arabidopsis thaliana OX=3702 GN=RPT6B PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 6.7e-21
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1   MNPMRGINLKGIVEKMNGASDAEVKAVCTEVGMFALRERRVHVTQEDFEIAIAKVMKKD 60
           MN MRGI+LK I EKMNGAS AE+KAVCTE GMFALRERRVHVTQEDFE+A+AKVMKKD
Sbjct: 349 MNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKD 407

[Close]

BLAST of IVF0010604 vs. ExPASy Swiss-Prot
Match: P34124 (26S proteasome regulatory subunit 8 OS=Dictyostelium discoideum OX=44689 GN=psmC5 PE=1 SV=2)

HSP 1 Score: 94.4 bits (233), Expect = 4.8e-19
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 1   MNPMRGINLKGIVEKMNGASDAEVKAVCTEVGMFALRERRVHVTQEDFEIAIAKVMKKD 60
           MN  RGINLK I +KMNGAS AE+KAVCTE GM+ALRERRVHV+QEDFE+A++KVMKKD
Sbjct: 333 MNLTRGINLKKISDKMNGASGAELKAVCTEAGMYALRERRVHVSQEDFEMAVSKVMKKD 391

[Close]

BLAST of IVF0010604 vs. ExPASy Swiss-Prot
Match: P41836 (26S proteasome regulatory subunit 8 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=let1 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.8e-18
Identity = 45/58 (77.59%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 1   MNPMRGINLKGIVEKMNGASDAEVKAVCTEVGMFALRERRVHVTQEDFEIAIAKVMKK 59
           MN  RGI+LK I EKMNGAS AE+K VCTE GMFALRERRVHVTQEDFE+A+AKV+ K
Sbjct: 333 MNLTRGIDLKSIAEKMNGASGAELKGVCTEAGMFALRERRVHVTQEDFELAVAKVLNK 390

[Close]

BLAST of IVF0010604 vs. ExPASy Swiss-Prot
Match: P62194 (26S proteasome regulatory subunit 8 OS=Bos taurus OX=9913 GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 9.1e-18
Identity = 45/59 (76.27%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 1   MNPMRGINLKGIVEKMNGASDAEVKAVCTEVGMFALRERRVHVTQEDFEIAIAKVMKKD 60
           MN  RGINL+ I E M GAS AEVK VCTE GM+ALRERRVHVTQEDFE+A+AKVM+KD
Sbjct: 336 MNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKD 394

[Close]

BLAST of IVF0010604 vs. ExPASy TrEMBL
Match: A0A5D3E253 (26S protease regulatory subunit 8-like protein B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold64G00310 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.1e-21
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MNPMRGINLKGIVEKMNGASDAEVKAVCTEVGMFALRERRVHVTQEDFEIAIAKV 56
           MNPMRGINLKGIVEKMNGASDAEVKAVCTEVGMFALRERRVHVTQEDFEIAIAKV
Sbjct: 189 MNPMRGINLKGIVEKMNGASDAEVKAVCTEVGMFALRERRVHVTQEDFEIAIAKV 243

[Close]

BLAST of IVF0010604 vs. ExPASy TrEMBL
Match: A0A5A7UBM5 (Thioredoxin F-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold71G00080 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.5e-19
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1  MNPMRGINLKGIVEKMNGASDAEVKAVCTEVGMFALRERRVHVTQEDFEIAIAKV 56
          MNPMRGI+LKGI EKMNGAS AEVKA+CTEVGMFALRERRVHVTQEDFE+AIAKV
Sbjct: 1  MNPMRGIDLKGIAEKMNGASGAEVKAICTEVGMFALRERRVHVTQEDFEMAIAKV 55

[Close]

BLAST of IVF0010604 vs. ExPASy TrEMBL
Match: A0A5A7TXZ5 (26S protease regulatory subunit 8-like protein B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G00510 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 8.5e-19
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1  MNPMRGINLKGIVEKMNGASDAEVKAVCTEVGMFALRERRVHVTQEDFEIAIAKV 56
          MNPMRGI+LKGI EKMNGASDAEVKAVCTEV MF LRERRVHVTQEDFEIAIAKV
Sbjct: 1  MNPMRGIDLKGITEKMNGASDAEVKAVCTEVRMFVLRERRVHVTQEDFEIAIAKV 55

[Close]

BLAST of IVF0010604 vs. ExPASy TrEMBL
Match: A0A5A7UDC9 (Thioredoxin F-type OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G002070 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-18
Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 0


Query: 1  MNPMRGINLKGIVEKMNGASDAEVKAVCTEVGMFALRERRVHVTQEDFEIAIAK 55
          MNPMRGI+LKGI EKMNGAS AEVKAVCTEVGMFALRERRVHVTQEDFE+AIAK
Sbjct: 1  MNPMRGIDLKGIAEKMNGASGAEVKAVCTEVGMFALRERRVHVTQEDFEMAIAK 54

[Close]

BLAST of IVF0010604 vs. ExPASy TrEMBL
Match: A0A2Z7D8Y5 (AAA domain-containing protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_06097 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.9e-18
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1   MNPMRGINLKGIVEKMNGASDAEVKAVCTEVGMFALRERRVHVTQEDFEIAIAKVMKKD 60
           MN MRGI+LK I EKMNGAS AE+KAVCTE GMFALRERRVHVTQEDFE+A+AKVMKKD
Sbjct: 348 MNMMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKD 406

[Close]

BLAST of IVF0010604 vs. NCBI nr
Match: TYK29681.1 (26S protease regulatory subunit 8-like protein B-like [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (274), Expect = 1.43e-27
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MNPMRGINLKGIVEKMNGASDAEVKAVCTEVGMFALRERRVHVTQEDFEIAIAKV 55
           MNPMRGINLKGIVEKMNGASDAEVKAVCTEVGMFALRERRVHVTQEDFEIAIAKV
Sbjct: 189 MNPMRGINLKGIVEKMNGASDAEVKAVCTEVGMFALRERRVHVTQEDFEIAIAKV 243

[Close]

BLAST of IVF0010604 vs. NCBI nr
Match: KAA0046767.1 (26S protease regulatory subunit 8-like protein B-like [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (253), Expect = 1.92e-26
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1  MNPMRGINLKGIVEKMNGASDAEVKAVCTEVGMFALRERRVHVTQEDFEIAIAKV 55
          MNPMRGI+LKGI EKMNGASDAEVKAVCTEV MF LRERRVHVTQEDFEIAIAKV
Sbjct: 1  MNPMRGIDLKGITEKMNGASDAEVKAVCTEVRMFVLRERRVHVTQEDFEIAIAKV 55

[Close]

BLAST of IVF0010604 vs. NCBI nr
Match: KAA0051596.1 (thioredoxin F-type [Cucumis melo var. makuwa] >TYK30543.1 thioredoxin F-type [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (254), Expect = 3.24e-25
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1  MNPMRGINLKGIVEKMNGASDAEVKAVCTEVGMFALRERRVHVTQEDFEIAIAKV 55
          MNPMRGI+LKGI EKMNGAS AEVKA+CTEVGMFALRERRVHVTQEDFE+AIAKV
Sbjct: 1  MNPMRGIDLKGIAEKMNGASGAEVKAICTEVGMFALRERRVHVTQEDFEMAIAKV 55

[Close]

BLAST of IVF0010604 vs. NCBI nr
Match: KAB2046937.1 (hypothetical protein ES319_A13G011500v1 [Gossypium barbadense] >KAB2094464.1 hypothetical protein ES319_A02G160400v1 [Gossypium barbadense] >KAG4211493.1 hypothetical protein ERO13_A02G109502v2 [Gossypium hirsutum] >TYH38631.1 hypothetical protein ES332_D12G122900v1 [Gossypium tomentosum] >TYJ50053.1 hypothetical protein E1A91_A01G179300v1 [Gossypium mustelinum])

HSP 1 Score: 97.8 bits (242), Expect = 4.43e-25
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1  MNPMRGINLKGIVEKMNGASDAEVKAVCTEVGMFALRERRVHVTQEDFEIAIAKVMKKD 59
          MN MRGI+LK I EKMNGAS AE+KAVCTE GMFALRERRVHVTQEDFE+A+AKVMKK+
Sbjct: 1  MNLMRGIDLKKIAEKMNGASGAELKAVCTESGMFALRERRVHVTQEDFEMAVAKVMKKE 59

[Close]

BLAST of IVF0010604 vs. NCBI nr
Match: TYH63822.1 (hypothetical protein ES332_D07G221800v1 [Gossypium tomentosum])

HSP 1 Score: 97.8 bits (242), Expect = 5.08e-25
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1  MNPMRGINLKGIVEKMNGASDAEVKAVCTEVGMFALRERRVHVTQEDFEIAIAKVMKKD 59
          MN MRGI+LK I EKMNGAS AE+KAVCTE GMFALRERRVHVTQEDFE+A+AKVMKK+
Sbjct: 6  MNLMRGIDLKKIAEKMNGASGAELKAVCTESGMFALRERRVHVTQEDFEMAVAKVMKKE 64

[Close]

BLAST of IVF0010604 vs. TAIR 10
Match: AT5G19990.1 (regulatory particle triple-A ATPase 6A )

HSP 1 Score: 100.5 bits (249), Expect = 4.8e-22
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1   MNPMRGINLKGIVEKMNGASDAEVKAVCTEVGMFALRERRVHVTQEDFEIAIAKVMKKD 60
           MN MRGI+LK I EKMNGAS AE+KAVCTE GMFALRERRVHVTQEDFE+A+AKVMKKD
Sbjct: 349 MNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKD 407

[Close]

BLAST of IVF0010604 vs. TAIR 10
Match: AT5G20000.1 (AAA-type ATPase family protein )

HSP 1 Score: 100.5 bits (249), Expect = 4.8e-22
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1   MNPMRGINLKGIVEKMNGASDAEVKAVCTEVGMFALRERRVHVTQEDFEIAIAKVMKKD 60
           MN MRGI+LK I EKMNGAS AE+KAVCTE GMFALRERRVHVTQEDFE+A+AKVMKKD
Sbjct: 349 MNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKD 407

[Close]

BLAST of IVF0010604 vs. TAIR 10
Match: AT4G29040.1 (regulatory particle AAA-ATPase 2A )

HSP 1 Score: 52.0 bits (123), Expect = 1.9e-07
Identity = 27/54 (50.00%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 7   INLKGIVEKMNGASDAEVKAVCTEVGMFALRERRVHVTQEDFEIAIAKVMKKDK 61
           +NL+  V   +  S A++KA+CTE G+ ALRERR+ VT  DF+ A  KVM K K
Sbjct: 381 VNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHPDFKKAKEKVMFKKK 434

[Close]

BLAST of IVF0010604 vs. TAIR 10
Match: AT2G20140.1 (AAA-type ATPase family protein )

HSP 1 Score: 51.6 bits (122), Expect = 2.5e-07
Identity = 27/54 (50.00%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 7   INLKGIVEKMNGASDAEVKAVCTEVGMFALRERRVHVTQEDFEIAIAKVMKKDK 61
           +NL+  V   +  S A++KA+CTE G+ ALRERR+ VT  DF+ A  KVM K K
Sbjct: 381 VNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHVDFKKAKEKVMFKKK 434

[Close]

BLAST of IVF0010604 vs. TAIR 10
Match: AT1G53750.1 (regulatory particle triple-A 1A )

HSP 1 Score: 47.0 bits (110), Expect = 6.3e-06
Identity = 23/57 (40.35%), Postives = 37/57 (64.91%), Query Frame = 0


Query: 1   MNPMRGINLKGIVEKMNGASDAEVKAVCTEVGMFALRERRVHVTQEDFEIAIAKVMK 58
           MN  R I  + +      ++ A++++VCTE GM+A+R RR  VT++DF  A+ KV+K
Sbjct: 355 MNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIK 411

The following BLAST results are available for this feature:

BLAST of IVF0010604 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C5U3	6.7e-21	84.75	26S proteasome regulatory subunit 8 homolog A OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q94BQ2	6.7e-21	84.75	26S proteasome regulatory subunit 8 homolog B OS=Arabidopsis thaliana OX=3702 GN...	[more]
P34124	4.8e-19	77.97	26S proteasome regulatory subunit 8 OS=Dictyostelium discoideum OX=44689 GN=psmC...	[more]
P41836	1.8e-18	77.59	26S proteasome regulatory subunit 8 homolog OS=Schizosaccharomyces pombe (strain...	[more]
P62194	9.1e-18	76.27	26S proteasome regulatory subunit 8 OS=Bos taurus OX=9913 GN=PSMC5 PE=2 SV=1	[more]

BLAST of IVF0010604 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E253	3.1e-21	100.00	26S protease regulatory subunit 8-like protein B-like OS=Cucumis melo var. makuw...	[more]
A0A5A7UBM5	6.5e-19	90.91	Thioredoxin F-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold71G00...	[more]
A0A5A7TXZ5	8.5e-19	92.73	26S protease regulatory subunit 8-like protein B-like OS=Cucumis melo var. makuw...	[more]
A0A5A7UDC9	1.5e-18	92.59	Thioredoxin F-type OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00...	[more]
A0A2Z7D8Y5	1.9e-18	84.75	AAA domain-containing protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_0609...	[more]

BLAST of IVF0010604 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK29681.1	1.43e-27	100.00	26S protease regulatory subunit 8-like protein B-like [Cucumis melo var. makuwa]	[more]
KAA0046767.1	1.92e-26	92.73	26S protease regulatory subunit 8-like protein B-like [Cucumis melo var. makuwa]	[more]
KAA0051596.1	3.24e-25	90.91	thioredoxin F-type [Cucumis melo var. makuwa] >TYK30543.1 thioredoxin F-type [Cu...	[more]
KAB2046937.1	4.43e-25	83.05	hypothetical protein ES319_A13G011500v1 [Gossypium barbadense] >KAB2094464.1 hyp...	[more]
TYH63822.1	5.08e-25	83.05	hypothetical protein ES332_D07G221800v1 [Gossypium tomentosum]	[more]

BLAST of IVF0010604 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19990.1	4.8e-22	84.75	regulatory particle triple-A ATPase 6A	[more]
AT5G20000.1	4.8e-22	84.75	AAA-type ATPase family protein	[more]
AT4G29040.1	1.9e-07	50.00	regulatory particle AAA-ATPase 2A	[more]
AT2G20140.1	2.5e-07	50.00	AAA-type ATPase family protein	[more]
AT1G53750.1	6.3e-06	40.35	regulatory particle triple-A 1A	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.8.60		coord: 1..60 e-value: 2.3E-17 score: 64.6
None	No IPR available	PANTHER	PTHR23073	26S PROTEASOME REGULATORY SUBUNIT	coord: 1..59
IPR041569	AAA ATPase, AAA+ lid domain	PFAM	PF17862	AAA_lid_3	coord: 7..49 e-value: 2.2E-8 score: 33.8
IPR035261	26S proteasome regulatory subunit 8	PANTHER	PTHR23073:SF102	BNAA02G04630D PROTEIN	coord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0010604.2	IVF0010604.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901800	positive regulation of proteasomal protein catabolic process
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0008540	proteasome regulatory particle, base subcomplex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0036402	proteasome-activating activity