IVF0010546 (gene) Melon (IVF77) v1

Overview


Name	IVF0010546
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Pol polyprotein
Location	chr02: 17573773 .. 17574057 (+)
RNA-Seq Expression	IVF0010546
Synteny	IVF0010546

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGTCACTTATAGAGATTGGCATGAAATGCTACCTTTCGCATTGCATGGATATAGAATATCAGTCCGCACGTCAACAGGGGCAACCCCTCTTTCACTAGTGTATGGTTTCGAAGCAGTTTTACCTGTTGAAGTTGAGGTGTCATCCCTTAGGGTAATCCAAGAGGTAGAACTAGATGAAGCAAAGTGGGCTCAAGTAAGGTACAAGCAACTGAATTTCATAGAAGAAAGGATACTGACTGCACTATGTAAAGGACAGTTGTACCAAAAGAAAATAACATGA

mRNA sequence

ATGTCGGTCACTTATAGAGATTGGCATGAAATGCTACCTTTCGCATTGCATGGATATAGAATATCAGTCCGCACGTCAACAGGGGCAACCCCTCTTTCACTAGTGTATGGTTTCGAAGCAGTTTTACCTGTTGAAGTTGAGGTGTCATCCCTTAGGGTAATCCAAGAGGTAGAACTAGATGAAGCAAAGTGGGCTCAAGTAAGGTACAAGCAACTGAATTTCATAGAAGAAAGGATACTGACTGCACTATGTAAAGGACAGTTGTACCAAAAGAAAATAACATGA

Coding sequence (CDS)

ATGTCGGTCACTTATAGAGATTGGCATGAAATGCTACCTTTCGCATTGCATGGATATAGAATATCAGTCCGCACGTCAACAGGGGCAACCCCTCTTTCACTAGTGTATGGTTTCGAAGCAGTTTTACCTGTTGAAGTTGAGGTGTCATCCCTTAGGGTAATCCAAGAGGTAGAACTAGATGAAGCAAAGTGGGCTCAAGTAAGGTACAAGCAACTGAATTTCATAGAAGAAAGGATACTGACTGCACTATGTAAAGGACAGTTGTACCAAAAGAAAATAACATGA

Protein sequence

MSVTYRDWHEMLPFALHGYRISVRTSTGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYKQLNFIEERILTALCKGQLYQKKIT

Homology

[Close]

BLAST of IVF0010546 vs. ExPASy TrEMBL
Match: A0A5A7UZT9 (Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35127G00010 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 9.2e-44
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MSVTYRDWHEMLPFALHGYRISVRTSTGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELD 60
          MSVTYRDWHEMLPFALHGYRISVRTSTG+TPLSLVYGFEAVLPVEVEVSSLRVIQEVELD
Sbjct: 1  MSVTYRDWHEMLPFALHGYRISVRTSTGSTPLSLVYGFEAVLPVEVEVSSLRVIQEVELD 60

Query: 61 EAKWAQVRYKQLNFIEERILTALCKGQLYQKKI 94
          EAKWAQVRYKQLNFIEERILTALCKGQLYQKKI
Sbjct: 61 EAKWAQVRYKQLNFIEERILTALCKGQLYQKKI 93

[Close]

BLAST of IVF0010546 vs. ExPASy TrEMBL
Match: A0A5A7SVL0 (Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00080 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 9.5e-41
Identity = 86/93 (92.47%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1   MSVTYRDWHEMLPFALHGYRISVRTSTGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELD 60
           MSVTYRDWHEMLPFALHGYRISVRTSTG+TP SLVYGFEAVLPVEVEV SLRVIQE+ELD
Sbjct: 40  MSVTYRDWHEMLPFALHGYRISVRTSTGSTPFSLVYGFEAVLPVEVEVPSLRVIQELELD 99

Query: 61  EAKWAQVRYKQLNFIEERILTALCKGQLYQKKI 94
           EAKWAQVRY+QLNFIEER LTALC+GQLYQKKI
Sbjct: 100 EAKWAQVRYEQLNFIEERRLTALCRGQLYQKKI 132

[Close]

BLAST of IVF0010546 vs. ExPASy TrEMBL
Match: A0A5A7VAF2 (RNA-directed DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00050 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 6.2e-40
Identity = 85/93 (91.40%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1   MSVTYRDWHEMLPFALHGYRISVRTSTGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELD 60
           MSVTYRDWHEMLPFAL+GYRISVRTSTG+TP SLVYGFEAVLPVEVEV SLRVIQE+ELD
Sbjct: 234 MSVTYRDWHEMLPFALNGYRISVRTSTGSTPFSLVYGFEAVLPVEVEVPSLRVIQELELD 293

Query: 61  EAKWAQVRYKQLNFIEERILTALCKGQLYQKKI 94
           EAKWAQVRY+QLNFIEER LTALC+GQLYQKKI
Sbjct: 294 EAKWAQVRYEQLNFIEERRLTALCRGQLYQKKI 326

[Close]

BLAST of IVF0010546 vs. ExPASy TrEMBL
Match: A0A5A7TU03 (Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001560 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.4e-38
Identity = 81/89 (91.01%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1  MSVTYRDWHEMLPFALHGYRISVRTSTGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELD 60
          MSVTYRDWHEMLPFALHGYRISVRTSTG+TP SLVYGFEAVLPVEVEV SLRVIQE++LD
Sbjct: 1  MSVTYRDWHEMLPFALHGYRISVRTSTGSTPFSLVYGFEAVLPVEVEVPSLRVIQELKLD 60

Query: 61 EAKWAQVRYKQLNFIEERILTALCKGQLY 90
          EAKWAQVRY+QLNFIEER LTALC+GQLY
Sbjct: 61 EAKWAQVRYEQLNFIEERRLTALCRGQLY 89

[Close]

BLAST of IVF0010546 vs. ExPASy TrEMBL
Match: A0A5D3CZI6 (Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold637G00430 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.4e-36
Identity = 79/93 (84.95%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 1   MSVTYRDWHEMLPFALHGYRISVRTSTGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELD 60
           M V YRDWHEMLPFAL+GYRISVRTSTGAT  SLVYGFE +LP+EVEV SL VIQEVELD
Sbjct: 51  MFVAYRDWHEMLPFALYGYRISVRTSTGATAFSLVYGFETILPIEVEVLSLGVIQEVELD 110

Query: 61  EAKWAQVRYKQLNFIEERILTALCKGQLYQKKI 94
           E KWAQVRY+QLNFIEER LTALC+GQLYQKKI
Sbjct: 111 EEKWAQVRYEQLNFIEERRLTALCRGQLYQKKI 143

[Close]

BLAST of IVF0010546 vs. NCBI nr
Match: KAA0060778.1 (Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 186 bits (471), Expect = 4.11e-59
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MSVTYRDWHEMLPFALHGYRISVRTSTGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELD 60
          MSVTYRDWHEMLPFALHGYRISVRTSTG+TPLSLVYGFEAVLPVEVEVSSLRVIQEVELD
Sbjct: 1  MSVTYRDWHEMLPFALHGYRISVRTSTGSTPLSLVYGFEAVLPVEVEVSSLRVIQEVELD 60

Query: 61 EAKWAQVRYKQLNFIEERILTALCKGQLYQKKI 93
          EAKWAQVRYKQLNFIEERILTALCKGQLYQKKI
Sbjct: 61 EAKWAQVRYKQLNFIEERILTALCKGQLYQKKI 93

[Close]

BLAST of IVF0010546 vs. NCBI nr
Match: KAA0033219.1 (Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 176 bits (445), Expect = 1.42e-53
Identity = 86/93 (92.47%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1   MSVTYRDWHEMLPFALHGYRISVRTSTGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELD 60
           MSVTYRDWHEMLPFALHGYRISVRTSTG+TP SLVYGFEAVLPVEVEV SLRVIQE+ELD
Sbjct: 40  MSVTYRDWHEMLPFALHGYRISVRTSTGSTPFSLVYGFEAVLPVEVEVPSLRVIQELELD 99

Query: 61  EAKWAQVRYKQLNFIEERILTALCKGQLYQKKI 93
           EAKWAQVRY+QLNFIEER LTALC+GQLYQKKI
Sbjct: 100 EAKWAQVRYEQLNFIEERRLTALCRGQLYQKKI 132

[Close]

BLAST of IVF0010546 vs. NCBI nr
Match: KAA0046610.1 (Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 167 bits (422), Expect = 1.06e-51
Identity = 81/89 (91.01%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1  MSVTYRDWHEMLPFALHGYRISVRTSTGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELD 60
          MSVTYRDWHEMLPFALHGYRISVRTSTG+TP SLVYGFEAVLPVEVEV SLRVIQE++LD
Sbjct: 1  MSVTYRDWHEMLPFALHGYRISVRTSTGSTPFSLVYGFEAVLPVEVEVPSLRVIQELKLD 60

Query: 61 EAKWAQVRYKQLNFIEERILTALCKGQLY 89
          EAKWAQVRY+QLNFIEER LTALC+GQLY
Sbjct: 61 EAKWAQVRYEQLNFIEERRLTALCRGQLY 89

[Close]

BLAST of IVF0010546 vs. NCBI nr
Match: KAA0065292.1 (RNA-directed DNA polymerase [Cucumis melo var. makuwa])

HSP 1 Score: 173 bits (438), Expect = 2.86e-50
Identity = 85/93 (91.40%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1   MSVTYRDWHEMLPFALHGYRISVRTSTGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELD 60
           MSVTYRDWHEMLPFAL+GYRISVRTSTG+TP SLVYGFEAVLPVEVEV SLRVIQE+ELD
Sbjct: 234 MSVTYRDWHEMLPFALNGYRISVRTSTGSTPFSLVYGFEAVLPVEVEVPSLRVIQELELD 293

Query: 61  EAKWAQVRYKQLNFIEERILTALCKGQLYQKKI 93
           EAKWAQVRY+QLNFIEER LTALC+GQLYQKKI
Sbjct: 294 EAKWAQVRYEQLNFIEERRLTALCRGQLYQKKI 326

[Close]

BLAST of IVF0010546 vs. NCBI nr
Match: TYK15866.1 (Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 161 bits (407), Expect = 3.36e-48
Identity = 79/93 (84.95%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 1   MSVTYRDWHEMLPFALHGYRISVRTSTGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELD 60
           M V YRDWHEMLPFAL+GYRISVRTSTGAT  SLVYGFE +LP+EVEV SL VIQEVELD
Sbjct: 51  MFVAYRDWHEMLPFALYGYRISVRTSTGATAFSLVYGFETILPIEVEVLSLGVIQEVELD 110

Query: 61  EAKWAQVRYKQLNFIEERILTALCKGQLYQKKI 93
           E KWAQVRY+QLNFIEER LTALC+GQLYQKKI
Sbjct: 111 EEKWAQVRYEQLNFIEERRLTALCRGQLYQKKI 143

The following BLAST results are available for this feature:

BLAST of IVF0010546 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0010546 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UZT9	9.2e-44	98.92	Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35127G00...	[more]
A0A5A7SVL0	9.5e-41	92.47	Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G0008...	[more]
A0A5A7VAF2	6.2e-40	91.40	RNA-directed DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7TU03	4.4e-38	91.01	Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G0015...	[more]
A0A5D3CZI6	2.4e-36	84.95	Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold637G0043...	[more]

BLAST of IVF0010546 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060778.1	4.11e-59	98.92	Pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0033219.1	1.42e-53	92.47	Pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0046610.1	1.06e-51	91.01	Pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0065292.1	2.86e-50	91.40	RNA-directed DNA polymerase [Cucumis melo var. makuwa]	[more]
TYK15866.1	3.36e-48	84.95	Pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0010546 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..76 e-value: 2.2E-8 score: 35.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0010546.1	IVF0010546.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity
molecular_function	GO:0003676	nucleic acid binding