IVF0010368 (gene) Melon (IVF77) v1

Overview
NameIVF0010368
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr09: 12516288 .. 12516646 (+)
RNA-Seq ExpressionIVF0010368
SyntenyIVF0010368
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCTTGTGAAGATTGATGTGGTTAGTAAATTGCCACTGCCTTCTGATTTAAAACCATTACGAAGCTTTTTGAGACATGTTGGGTTCTATCGCAGATTCATCAAAGGATTTTTCCAAATCGCCAAACCACTGAGAAACGTATTGAGCGTAAATCAACCTACATCTTTGATGAGAAGTGCCACCAGGCATTCCAAACATTAAAAGACATGTTGACCCCAACGTCTATCCTCATCACTCCTGATTGGTTGCAACCATTTGAATTGATGTGCGACACAAGTGATGTGACGGTAGGAGCTATATTAGGTCAAAAGAAGGATAAAGTGATCCACCCGATATACTACGCGGGATACAAATGA

mRNA sequence

ATGGATCTTGTGAAGATTGATGTGATTCATCAAAGGATTTTTCCAAATCGCCAAACCACTGAGAAACGTATTGAGCGTAAATCAACCTACATCTTTGATGAGAAGTGCCACCAGGCATTCCAAACATTAAAAGACATGTTGACCCCAACGTCTATCCTCATCACTCCTGATTGGTTGCAACCATTTGAATTGATGTGCGACACAAGTGATGTGACGGTAGGAGCTATATTAGGTCAAAAGAAGGATAAAGTGATCCACCCGATATACTACGCGGGATACAAATGA

Coding sequence (CDS)

ATGGATCTTGTGAAGATTGATGTGATTCATCAAAGGATTTTTCCAAATCGCCAAACCACTGAGAAACGTATTGAGCGTAAATCAACCTACATCTTTGATGAGAAGTGCCACCAGGCATTCCAAACATTAAAAGACATGTTGACCCCAACGTCTATCCTCATCACTCCTGATTGGTTGCAACCATTTGAATTGATGTGCGACACAAGTGATGTGACGGTAGGAGCTATATTAGGTCAAAAGAAGGATAAAGTGATCCACCCGATATACTACGCGGGATACAAATGA

Protein sequence

MDLVKIDVIHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQPFELMCDTSDVTVGAILGQKKDKVIHPIYYAGYK
Homology
BLAST of IVF0010368 vs. ExPASy TrEMBL
Match: A0A5D3DSQ6 (RT_RNaseH_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002240 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 3.0e-47
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 1  MDLVKIDVIHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQ 60
          MDLVKIDVIHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQ
Sbjct: 1  MDLVKIDVIHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQ 60

Query: 61 PFELMCDTSDVTVGAILGQKKDKVIHPIYYAGYK 95
          PFELMCDTSDVTVGAILGQKKDKVIHPIYYAGYK
Sbjct: 61 PFELMCDTSDVTVGAILGQKKDKVIHPIYYAGYK 94

BLAST of IVF0010368 vs. ExPASy TrEMBL
Match: A0A5D3DSP9 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002130 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.0e-18
Identity = 50/81 (61.73%), Postives = 60/81 (74.07%), Query Frame = 0

Query: 5   KIDV-IHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQPFE 64
           KIDV IH RIFP+RQT++  +    +Y FDEKC+QAFQT+KD LT   ILIT DW QPFE
Sbjct: 34  KIDVKIHSRIFPDRQTSQYLLCVDQSYDFDEKCNQAFQTIKDALTSKPILITSDWSQPFE 93

Query: 65  LMCDTSDVTVGAILGQKKDKV 85
           LMCDTSDV VG +LG  +  +
Sbjct: 94  LMCDTSDVVVGNMLGATRSSI 114

BLAST of IVF0010368 vs. ExPASy TrEMBL
Match: A0A5A7UKH8 (Retrovirus-related Pol polyprotein from transposon 412 family OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G00810 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.1e-18
Identity = 52/90 (57.78%), Postives = 59/90 (65.56%), Query Frame = 0

Query: 1   MDLVKIDVIHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQ 60
           +DL KIDV+  +  P       R      Y FD+K +QAFQTLKD L    I I PDW Q
Sbjct: 19  VDLTKIDVV-CKFLPPSDVKPLRSFLGQPYNFDKKRNQAFQTLKDALALAPIFIMPDWSQ 78

Query: 61  PFELMCDTSDVTVGAILGQKKDKVIHPIYY 91
           PFELMCD SDV VGA+ GQKK+KVIHPIYY
Sbjct: 79  PFELMCDASDVAVGAMFGQKKNKVIHPIYY 107

BLAST of IVF0010368 vs. ExPASy TrEMBL
Match: A0A5A7V7K1 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G001740 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 8.7e-18
Identity = 50/75 (66.67%), Postives = 58/75 (77.33%), Query Frame = 0

Query: 5   KIDV-IHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQPFE 64
           KIDV IH RIFP+RQT++  +    +Y FDEKC+QAFQT+KD LT   ILIT DW QPFE
Sbjct: 34  KIDVKIHSRIFPDRQTSQYLLCVDQSYDFDEKCNQAFQTIKDALTSKPILITSDWSQPFE 93

Query: 65  LMCDTSDVTVGAILG 79
           LMCDTSDV VG +LG
Sbjct: 94  LMCDTSDVVVGNMLG 108

BLAST of IVF0010368 vs. ExPASy TrEMBL
Match: A0A6P5N2H8 (uncharacterized protein LOC110277225 OS=Arachis duranensis OX=130453 GN=LOC110277225 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 9.6e-17
Identity = 41/83 (49.40%), Postives = 59/83 (71.08%), Query Frame = 0

Query: 9   IHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQPFELMCDT 68
           IHQR F N + T++ +  + ++IFD++C  AF+TLK  LT   I+  P W  PFELMCD 
Sbjct: 301 IHQRFFKNSKATKQFVGGRQSFIFDDECKHAFETLKAKLTTAPIITPPSWGLPFELMCDA 360

Query: 69  SDVTVGAILGQKKDKVIHPIYYA 92
           S++ +GA+LGQ+K+K +H IYYA
Sbjct: 361 SNLAIGAVLGQRKEKKLHVIYYA 383

BLAST of IVF0010368 vs. NCBI nr
Match: KAA0062384.1 (uncharacterized protein E6C27_scaffold154G001600 [Cucumis melo var. makuwa] >TYK26594.1 uncharacterized protein E5676_scaffold313G002240 [Cucumis melo var. makuwa])

HSP 1 Score: 196 bits (499), Expect = 2.19e-63
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 1  MDLVKIDVIHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQ 60
          MDLVKIDVIHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQ
Sbjct: 1  MDLVKIDVIHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQ 60

Query: 61 PFELMCDTSDVTVGAILGQKKDKVIHPIYYAGYK 94
          PFELMCDTSDVTVGAILGQKKDKVIHPIYYAGYK
Sbjct: 61 PFELMCDTSDVTVGAILGQKKDKVIHPIYYAGYK 94

BLAST of IVF0010368 vs. NCBI nr
Match: KAA0062396.1 (putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 1.22e-24
Identity = 50/75 (66.67%), Postives = 58/75 (77.33%), Query Frame = 0

Query: 5   KIDV-IHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQPFE 64
           KIDV IH RIFP+RQT++  +    +Y FDEKC+QAFQT+KD LT   ILIT DW QPFE
Sbjct: 34  KIDVKIHSRIFPDRQTSQYLLCVDQSYDFDEKCNQAFQTIKDALTSKPILITSDWSQPFE 93

Query: 65  LMCDTSDVTVGAILG 78
           LMCDTSDV VG +LG
Sbjct: 94  LMCDTSDVVVGNMLG 108

BLAST of IVF0010368 vs. NCBI nr
Match: TYK26584.1 (putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (249), Expect = 2.44e-24
Identity = 50/81 (61.73%), Postives = 60/81 (74.07%), Query Frame = 0

Query: 5   KIDV-IHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQPFE 64
           KIDV IH RIFP+RQT++  +    +Y FDEKC+QAFQT+KD LT   ILIT DW QPFE
Sbjct: 34  KIDVKIHSRIFPDRQTSQYLLCVDQSYDFDEKCNQAFQTIKDALTSKPILITSDWSQPFE 93

Query: 65  LMCDTSDVTVGAILGQKKDKV 84
           LMCDTSDV VG +LG  +  +
Sbjct: 94  LMCDTSDVVVGNMLGATRSSI 114

BLAST of IVF0010368 vs. NCBI nr
Match: KAA0054796.1 (Retrovirus-related Pol polyprotein from transposon 412 family [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 2.53e-24
Identity = 52/90 (57.78%), Postives = 59/90 (65.56%), Query Frame = 0

Query: 1   MDLVKIDVIHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQ 60
           +DL KIDV+  +  P       R      Y FD+K +QAFQTLKD L    I I PDW Q
Sbjct: 19  VDLTKIDVVC-KFLPPSDVKPLRSFLGQPYNFDKKRNQAFQTLKDALALAPIFIMPDWSQ 78

Query: 61  PFELMCDTSDVTVGAILGQKKDKVIHPIYY 90
           PFELMCD SDV VGA+ GQKK+KVIHPIYY
Sbjct: 79  PFELMCDASDVAVGAMFGQKKNKVIHPIYY 107

BLAST of IVF0010368 vs. NCBI nr
Match: KAA0067087.1 (Retrovirus-related Pol polyprotein from transposon 412 family [Cucumis melo var. makuwa] >TYK26322.1 Retrovirus-related Pol polyprotein from transposon 412 family [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 1.48e-21
Identity = 43/83 (51.81%), Postives = 55/83 (66.27%), Query Frame = 0

Query: 1   MDLVKIDVIHQRIFPNRQTTEKRIERKSTYIFDEKCHQAFQTLKDMLTPTSILITPDWLQ 60
           +D  KIDVIH RIFP+ +     +     Y FD+KC+  FQT+KD LT   ILITPDW Q
Sbjct: 30  VDPAKIDVIHSRIFPDSKPLSNLLCTDQPYDFDQKCNYTFQTIKDALTSMLILITPDWSQ 89

Query: 61  PFELMCDTSDVTVGAILGQKKDK 83
           PFELMCD SD+ +G  L +++ K
Sbjct: 90  PFELMCDASDMVLGLYLVKRRTK 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DSQ63.0e-47100.00RT_RNaseH_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5D3DSP93.0e-1861.73Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313... [more]
A0A5A7UKH85.1e-1857.78Retrovirus-related Pol polyprotein from transposon 412 family OS=Cucumis melo va... [more]
A0A5A7V7K18.7e-1866.67Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154... [more]
A0A6P5N2H89.6e-1749.40uncharacterized protein LOC110277225 OS=Arachis duranensis OX=130453 GN=LOC11027... [more]
Match NameE-valueIdentityDescription
KAA0062384.12.19e-63100.00uncharacterized protein E6C27_scaffold154G001600 [Cucumis melo var. makuwa] >TYK... [more]
KAA0062396.11.22e-2466.67putative polyprotein [Cucumis melo var. makuwa][more]
TYK26584.12.44e-2461.73putative polyprotein [Cucumis melo var. makuwa][more]
KAA0054796.12.53e-2457.78Retrovirus-related Pol polyprotein from transposon 412 family [Cucumis melo var.... [more]
KAA0067087.11.48e-2151.81Retrovirus-related Pol polyprotein from transposon 412 family [Cucumis melo var.... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041577Reverse transcriptase/retrotransposon-derived protein, RNase H-like domainPFAMPF17919RT_RNaseH_2coord: 32..92
e-value: 4.1E-14
score: 52.4
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 27..93

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0010368.2IVF0010368.2mRNA