IVF0010229 (gene) Melon (IVF77) v1

Overview


Name	IVF0010229
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	F-box protein
Location	tig00002689: 15660 .. 18354 (+)
RNA-Seq Expression	IVF0010229
Synteny	IVF0010229

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATTATGGAGGTTTCCTAAATTCATGAAAATACCCAACAAAATGTACGTTCGTATCATATAATTTGGATATGTTTGGAGCTCAGATTCTTGAAATGGTGGCGAAATCATGTCAACATCTTCTCTCTTTCTCTCTCTTCTTTGAATCTTCCGTTTCCTTTTTTATGCTTATCTTTTGCCAAAAGTAACGAATTCAACTCGTGAATTTCCTCGTTTTTCAACGCCGCAAACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCAAATTGATATACGGCTACAATGGATTCGGATGTTGTGTGGTCGGTAGAGATGGAGTTGGAACCGGAGATTGATCGATTGCCGATTGACCTATTGGCTCATATTTTTGCTATGATCACCTCCTTCACCGATTTGGCTCAGTAATTCATTTTCAATTTCGGCTTTGTTGAATTTTTTTTCTTCAATTGCTATTTTTATTTCCCCCTAAATTTGAGGGTTTATGCGATTGTGGAAAAACGCAGGGCGTGCGGCGTATGTAGAAAATGGAAGGAAGGAGTTAAATTGTCTCTCGGTAGGAGGAAGAGTTTGAGCTTTGCTGGTTGGAAGATGGATGATAATTCCACTGCTCGCCTTATTCGCCATGCCTACAGTCTTCGGGAGCTCGACATGTAATCTCTGTCTCTCTTGAAATTTCAGTGAAATTTTCATCAGTTTGCTTTTCTTCGAGTAGTTTCTGATTGCAGATAGTTACTGGTGTTGTGTGTTGTGAGATGAAACTAGTTTTTTGAATTCGCTAATCGATTCAATTGGCTTCGCTTTCCGATTACGAACCACAAAAACAGAGGTTTATCTTGAGATTGTGAGGTTGTTTGGGAATAATCTAGGGAGAAGGTTCTTTGAAATTGTGTTTGTAAATCTGGTGTTAAATTATTGATGTTTATGGTTCGTGTTCTTCAGCTCAAGGAGCCGTTGGGGTTGCCAAATAACAGACCATGGATTATATGAAATCTCTCTTGCAAAGTGCATTCCCAACCTCAAGTCCATTTCGCTTTGGGGTATGGCAGGGATCACCGACAAGGGTGTTGTGCAACTGGTATGAATTTAATATTATCTTATCTTAGAACAAACATTTCTAAAGAAATAGACCTTGATTTGTTATTGGAGAATGAGTTTAGATGGGATTTGAACTATTGGATTTCTCTAAATTGTTCATCATCTAGAATATATGTCGTTCGTAGTTTTGGATATTCTAGAGTCCATCCATAAGTAAACACCGGTTAGAGAAATTCTCTTTGTCCTGAAATTTTATGTTCTTTACAGGACTTTAGGACTTTAGGAGGAAGTTTTTGGCAACATTTTCTTGTTCTCTCTACTTCAGAAATTTTGGAAATGCATGATTTTTGGAAGTAAGGTTCCACTTGTTCTTAGAAATAAATCTTCATAAGAGAAAAAACAAGAAACTACTTTCAAAAAATGGTACTTCATAGGCGGAAATTAACTTGCCCAAATTATGTGTTCTCAATCAAAATGTTAGAGACCCAAATTCCTAAAGTCATCATGAGGTTGTCTTAAAAGGTATAATCCATATTGCCACATACCTAGAATTTAATATTTTACAAGTTTTCTTGACAATCGAATGTTATAGGTTCAAACAAACTCTCTCGAATGATTAGTTGAAGTTTGCATTTGTGGTTATAAAACAATAAGAAAAAAAAATCCAAATCCCTCCACCCACATATAAAAAATTTGTATTCCACATGTGCTTTCACTTTACTTTTGTTCCAAAATACATACTTTTTTCCACATTTCAATATCTTACGTAGTTTACTAACATATGACTTCCTTCTCCTAAAACTATATTTGCTTGTCTTCCCAGATTTCCAGAGCCAACTCTTTACAAAACTTGAATATTGGTGGAACCTTTGTCACAGACGTATCTCTATATGCAATTGCAGATAGCTGCCCAAATTTGAAGGTTATTATTCTAAGCATCTCCTTCACTCCCTATACAATAATACCTACATGTGTTGCACACAATCTTTAACCAAGTCCATATCTTTATTAATCCTGCAGACCATTGTCCTTTGGAGCTGTCGCCATGTAACAGAGACCGGACTTCTTATTCTTGTAAGTAAATGCCGAAAACTCGAGTCGATAAATGTTTGGGGAATGAGGGTTCCTGTAGACTGCTTCATTGGTTTGGTTGCGATAAGTCCATCCCTTCAAATAAAATCAAGAAGTCTGCTTAATTCTATGTGGCCTGTTGTGTGAAAATATGCTATTAAAATATTCTTCATATGTCCTGTAAAGCTTCTATTGTATGTATATGTCTTCATCTTTGTGTTTTTCTTCATCAAAAGTAAAATATTAGATTTGTTATCATTCCCCCAATAAAGCTGATTGTGTTACGTTCAGATCATTTAAAACTAAATTATACTCTCTTCTAGTGTAAATATAATTGTATGTAAAAACTAAGCTCGCATATTTTCGAGCTAAATGTGTTTATATTCAGATTGTCCCATAATTACATATCTTTGGGACCTAAGAATCAAGATTCTTCTAATAGTTTCCATTTGTTATCCAAATTAGATATATAGTAAAATTTAAGTAAGGGAGTGTTTGGGACTAGTTTGCATTTGTGAGAGAGATTATTTTAGCTTGAATTATAATAATGTATTTGTGGTGAAAACT

mRNA sequence

CCATTATGGAGGTTTCCTAAATTCATGAAAATACCCAACAAAATGTACGTTCGTATCATATAATTTGGATATGTTTGGAGCTCAGATTCTTGAAATGGTGGCGAAATCATGTCAACATCTTCTCTCTTTCTCTCTCTTCTTTGAATCTTCCGTTTCCTTTTTTATGCTTATCTTTTGCCAAAAGTAACGAATTCAACTCGTGAATTTCCTCGTTTTTCAACGCCGCAAACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCAAATTGATATACGGCTACAATGGATTCGGATGTTGTGTGGTCGGTAGAGATGGAGTTGGAACCGGAGATTGATCGATTGCCGATTGACCTATTGGCTCATATTTTTGCTATGATCACCTCCTTCACCGATTTGGCTCAGTAATTCATTTTCAATTTCGGCTTTGTTGAATTTTTTTTCTTCAATTGCTATTTTTATTTCCCCCTAAATTTGAGGGTTTATGCGATTGTGGAAAAACGCAGGGCGTGCGGCGTATGTAGAAAATGGAAGGAAGGAGTTAAATTGTCTCTCGGTAGGAGGAAGAGTTTGAGCTTTGCTGGTTGGAAGATGGATGATAATTCCACTGCTCGCCTTATTCGCCATGCCTACAGTCTTCGGGAGCTCGACATCTCAAGGAGCCGTTGGGGTTGCCAAATAACAGACCATGGATTATATGAAATCTCTCTTGCAAAGTGCATTCCCAACCTCAAGTCCATTTCGCTTTGGGGTATGGCAGGGATCACCGACAAGGGTGTTGTGCAACTGATTTCCAGAGCCAACTCTTTACAAAACTTGAATATTGGTGGAACCTTTGTCACAGACGTATCTCTATATGCAATTGCAGATAGCTGCCCAAATTTGAAGACCATTGTCCTTTGGAGCTGTCGCCATGTAACAGAGACCGGACTTCTTATTCTTGTAAGTAAATGCCGAAAACTCGAGTCGATAAATGTTTGGGGAATGAGGGTTCCTGTAGACTGCTTCATTGGTTTGGTTGCGATAAGTCCATCCCTTCAAATAAAATCAAGAAGTCTGCTTAATTCTATGTGGCCTGTTGTGTGAAAATATGCTATTAAAATATTCTTCATATGTCCTGTAAAGCTTCTATTGTATGTATATGTCTTCATCTTTGTGTTTTTCTTCATCAAAAGTAAAATATTAGATTTGTTATCATTCCCCCAATAAAGCTGATTGTGTTACGTTCAGATCATTTAAAACTAAATTATACTCTCTTCTAGTGTAAATATAATTGTATGTAAAAACTAAGCTCGCATATTTTCGAGCTAAATGTGTTTATATTCAGATTGTCCCATAATTACATATCTTTGGGACCTAAGAATCAAGATTCTTCTAATAGTTTCCATTTGTTATCCAAATTAGATATATAGTAAAATTTAAGTAAGGGAGTGTTTGGGACTAGTTTGCATTTGTGAGAGAGATTATTTTAGCTTGAATTATAATAATGTATTTGTGGTGAAAACT

Coding sequence (CDS)

ATGGATGATAATTCCACTGCTCGCCTTATTCGCCATGCCTACAGTCTTCGGGAGCTCGACATCTCAAGGAGCCGTTGGGGTTGCCAAATAACAGACCATGGATTATATGAAATCTCTCTTGCAAAGTGCATTCCCAACCTCAAGTCCATTTCGCTTTGGGGTATGGCAGGGATCACCGACAAGGGTGTTGTGCAACTGATTTCCAGAGCCAACTCTTTACAAAACTTGAATATTGGTGGAACCTTTGTCACAGACGTATCTCTATATGCAATTGCAGATAGCTGCCCAAATTTGAAGACCATTGTCCTTTGGAGCTGTCGCCATGTAACAGAGACCGGACTTCTTATTCTTGTAAGTAAATGCCGAAAACTCGAGTCGATAAATGTTTGGGGAATGAGGGTTCCTGTAGACTGCTTCATTGGTTTGGTTGCGATAAGTCCATCCCTTCAAATAAAATCAAGAAGTCTGCTTAATTCTATGTGGCCTGTTGTGTGA

Protein sequence

MDDNSTARLIRHAYSLRELDISRSRWGCQITDHGLYEISLAKCIPNLKSISLWGMAGITDKGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSKCRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLNSMWPVV

Homology

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BLAST of IVF0010229 vs. ExPASy Swiss-Prot
Match: Q9FH99 (F-box protein At5g67140 OS=Arabidopsis thaliana OX=3702 GN=At5g67140 PE=2 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 1.9e-62
Identity = 111/157 (70.70%), Postives = 134/157 (85.35%), Query Frame = 0


Query: 1   MDDNSTARLIRHAYSLRELDISRSRWGCQITDHGLYEISLAKCIPNLKSISLWGMAGITD 60
           MDD+ST+RL+  A++L+ELDISRSRWGC ITD+GLY+I+ A+C+ NL S+SLWGM  ITD
Sbjct: 59  MDDDSTSRLVHLAFNLKELDISRSRWGCHITDNGLYQIASARCVSNLNSVSLWGMTAITD 118

Query: 61  KGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSK 120
            GVVQLISR +SLQ+LNIGGTF+TD SL+AIA+ C  LKTI +W CRHVTE GLL+LV+K
Sbjct: 119 SGVVQLISRTSSLQHLNIGGTFITDESLFAIAERCHQLKTIGMWCCRHVTERGLLVLVNK 178

Query: 121 CRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLL 158
           CRKLESIN+WG RVPVDCFI L+ ISP+LQIK   LL
Sbjct: 179 CRKLESINLWGTRVPVDCFIALLTISPALQIKPMELL 215

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BLAST of IVF0010229 vs. ExPASy Swiss-Prot
Match: Q9SKK0 (EIN3-binding F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=EBF1 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.1e-12
Identity = 36/102 (35.29%), Postives = 62/102 (60.78%), Query Frame = 0


Query: 29  QITDHGLYEISLAKCIPNLKSISLWGMAGITDKGVVQLISRANSLQNLNIGG-TFVTDVS 88
           +++D GL   S+ +  P+L S+SLW ++ ITD G++++      L+ L +   + +TD  
Sbjct: 163 KVSDLGLR--SIGRSCPSLGSLSLWNVSTITDNGLLEIAEGCAQLEKLELNRCSTITDKG 222

Query: 89  LYAIADSCPNLKTIVLWSCRHVTETGLLILVSKCRKLESINV 130
           L AIA SCPNL  + L +C  + + GLL +   C KL+S+++
Sbjct: 223 LVAIAKSCPNLTELTLEACSRIGDEGLLAIARSCSKLKSVSI 262

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BLAST of IVF0010229 vs. ExPASy Swiss-Prot
Match: O49286 (F-box protein SKP2B OS=Arabidopsis thaliana OX=3702 GN=SKP2B PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-11
Identity = 40/131 (30.53%), Postives = 74/131 (56.49%), Query Frame = 0


Query: 1   MDDNSTARLIRHAYSLRELDISRSRWGCQITDHGLYEISLAKCIPNLKSISLWGMAGITD 60
           ++DN+   +  H + L++LD+S+S    +ITDH LY  SLA+   NL  ++L G    +D
Sbjct: 104 LEDNAVEAIANHCHELQDLDLSKS---SKITDHSLY--SLARGCTNLTKLNLSGCTSFSD 163

Query: 61  KGVVQLISRANSLQNLNIGGTF--VTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILV 120
             +  L      L+ LN+ G    V+D +L AI ++C  L+++ L  C ++++ G++ L 
Sbjct: 164 TALAHLTRFCRKLKILNLCGCVEAVSDNTLQAIGENCNQLQSLNLGWCENISDDGVMSLA 223

Query: 121 SKCRKLESINV 130
             C  L ++++
Sbjct: 224 YGCPDLRTLDL 229

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BLAST of IVF0010229 vs. ExPASy Swiss-Prot
Match: Q9LPL4 (F-box protein SKP2A OS=Arabidopsis thaliana OX=3702 GN=SKP2A PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.7e-11
Identity = 40/133 (30.08%), Postives = 74/133 (55.64%), Query Frame = 0


Query: 1   MDDNSTARLIRHAYSLRELDISRSRWGCQITDHGLYEISLAKCIPNLKSISLWGMAGITD 60
           ++DN+   +  H + L+ELD+S+S    +ITD  LY  +LA   P+L  ++L G    +D
Sbjct: 104 LEDNAVEAIANHCHELQELDLSKS---LKITDRSLY--ALAHGCPDLTKLNLSGCTSFSD 163

Query: 61  KGVVQLISRANSLQNLNIGGTF--VTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILV 120
             +  L      L+ LN+ G    VTD +L AI ++C  ++++ L  C ++++ G++ L 
Sbjct: 164 TAIAYLTRFCRKLKVLNLCGCVKAVTDNALEAIGNNCNQMQSLNLGWCENISDDGVMSLA 223

Query: 121 SKCRKLESINVWG 132
             C  L ++++ G
Sbjct: 224 YGCPDLRTLDLCG 231

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BLAST of IVF0010229 vs. ExPASy Swiss-Prot
Match: Q8LB33 (F-box protein At3g58530 OS=Arabidopsis thaliana OX=3702 GN=At3g58530 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.9e-09
Identity = 33/107 (30.84%), Postives = 64/107 (59.81%), Query Frame = 0


Query: 28  CQ-ITDHGLYEISLAKCIPNLKSISLWGMAGITDKGVVQLISRANSLQNLNIGG-TFVTD 87
           CQ I+D+G+  I+     P LK  S++    +TD G+  L+     + +LN+ G   +TD
Sbjct: 121 CQKISDNGIEAIT--SICPKLKVFSIYWNVRVTDAGIRNLVKNCRHITDLNLSGCKSLTD 180

Query: 88  VSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSKCRKLESINVWGM 133
            S+  +A+S P+L+++ +  C  +T+ GLL ++ KC  L+++N++ +
Sbjct: 181 KSMQLVAESYPDLESLNITRCVKITDDGLLQVLQKCFSLQTLNLYAL 225

[Close]

BLAST of IVF0010229 vs. ExPASy TrEMBL
Match: A0A1S4E1P2 (F-box protein At5g67140 OS=Cucumis melo OX=3656 GN=LOC103497375 PE=4 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 2.1e-88
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MDDNSTARLIRHAYSLRELDISRSRWGCQITDHGLYEISLAKCIPNLKSISLWGMAGITD 60
           MDDNSTARLIRHAYSLRELDISRSRWGCQITDHGLYEISLAKCIPNLKSISLWGMAGITD
Sbjct: 69  MDDNSTARLIRHAYSLRELDISRSRWGCQITDHGLYEISLAKCIPNLKSISLWGMAGITD 128

Query: 61  KGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSK 120
           KGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSK
Sbjct: 129 KGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSK 188

Query: 121 CRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLNSMWPVV 165
           CRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLNSMWPVV
Sbjct: 189 CRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLNSMWPVV 232

[Close]

BLAST of IVF0010229 vs. ExPASy TrEMBL
Match: A0A5D3BMX7 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00750 PE=4 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 2.1e-88
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MDDNSTARLIRHAYSLRELDISRSRWGCQITDHGLYEISLAKCIPNLKSISLWGMAGITD 60
           MDDNSTARLIRHAYSLRELDISRSRWGCQITDHGLYEISLAKCIPNLKSISLWGMAGITD
Sbjct: 69  MDDNSTARLIRHAYSLRELDISRSRWGCQITDHGLYEISLAKCIPNLKSISLWGMAGITD 128

Query: 61  KGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSK 120
           KGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSK
Sbjct: 129 KGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSK 188

Query: 121 CRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLNSMWPVV 165
           CRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLNSMWPVV
Sbjct: 189 CRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLNSMWPVV 232

[Close]

BLAST of IVF0010229 vs. ExPASy TrEMBL
Match: A0A0A0LPU5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G279180 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 6.9e-87
Identity = 162/164 (98.78%), Postives = 162/164 (98.78%), Query Frame = 0


Query: 1   MDDNSTARLIRHAYSLRELDISRSRWGCQITDHGLYEISLAKCIPNLKSISLWGMAGITD 60
           MDDNSTARLIRHAYSLRELDISRSRWGC ITDHGLYEISLAKCIPNLKSISLWGMAGITD
Sbjct: 72  MDDNSTARLIRHAYSLRELDISRSRWGCHITDHGLYEISLAKCIPNLKSISLWGMAGITD 131

Query: 61  KGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSK 120
           KGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSK
Sbjct: 132 KGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSK 191

Query: 121 CRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLNSMWPVV 165
           CRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLNSMW VV
Sbjct: 192 CRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLNSMWSVV 235

[Close]

BLAST of IVF0010229 vs. ExPASy TrEMBL
Match: A0A6J1G699 (F-box protein At5g67140 OS=Cucurbita moschata OX=3662 GN=LOC111451179 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.3e-82
Identity = 156/165 (94.55%), Postives = 161/165 (97.58%), Query Frame = 0


Query: 1   MDDNSTARLIRHAYSLRELDISRSRWGCQITDHGLYEISLAKCIPNLKSISLWGMAGITD 60
           MDD STARLI HAYSLR+LDISRSRWGCQITDHGL+EISLAKCIPNLKSISLWGMAGITD
Sbjct: 69  MDDYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISLWGMAGITD 128

Query: 61  KGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSK 120
           KGVVQLISRANSLQNLNIGGTFVTDVSL+AIAD+CPNLKTI LWSCRHVTETGLLILVSK
Sbjct: 129 KGVVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHVTETGLLILVSK 188

Query: 121 CRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRS-LLNSMWPVV 165
           CRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRS LLNSMWPV+
Sbjct: 189 CRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLLNSMWPVL 233

[Close]

BLAST of IVF0010229 vs. ExPASy TrEMBL
Match: A0A6J1KZ61 (F-box protein At5g67140 OS=Cucurbita maxima OX=3661 GN=LOC111499581 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.1e-81
Identity = 155/165 (93.94%), Postives = 160/165 (96.97%), Query Frame = 0


Query: 1   MDDNSTARLIRHAYSLRELDISRSRWGCQITDHGLYEISLAKCIPNLKSISLWGMAGITD 60
           MDD STARLI HAYSLR+LDISRSRWGCQITDHGL+EISLAKCIPNLKSISLWGMAGITD
Sbjct: 69  MDDYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISLWGMAGITD 128

Query: 61  KGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSK 120
           KGVVQLISRANSLQNLNIGGTFVTDVSL+AIAD+CPNLKTI LWSCRHVTETGLLILVSK
Sbjct: 129 KGVVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHVTETGLLILVSK 188

Query: 121 CRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRS-LLNSMWPVV 165
           C KLESINVWGMRVPVDCFIGLVAISPSLQIKSRS LLNSMWPV+
Sbjct: 189 CCKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLLNSMWPVL 233

[Close]

BLAST of IVF0010229 vs. NCBI nr
Match: XP_008457759.1 (PREDICTED: F-box protein At5g67140 [Cucumis melo] >XP_008457760.1 PREDICTED: F-box protein At5g67140 [Cucumis melo] >XP_016902142.1 PREDICTED: F-box protein At5g67140 [Cucumis melo] >XP_016902143.1 PREDICTED: F-box protein At5g67140 [Cucumis melo] >KAA0045774.1 F-box protein [Cucumis melo var. makuwa] >TYJ99508.1 F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 334 bits (857), Expect = 1.07e-114
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MDDNSTARLIRHAYSLRELDISRSRWGCQITDHGLYEISLAKCIPNLKSISLWGMAGITD 60
           MDDNSTARLIRHAYSLRELDISRSRWGCQITDHGLYEISLAKCIPNLKSISLWGMAGITD
Sbjct: 69  MDDNSTARLIRHAYSLRELDISRSRWGCQITDHGLYEISLAKCIPNLKSISLWGMAGITD 128

Query: 61  KGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSK 120
           KGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSK
Sbjct: 129 KGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSK 188

Query: 121 CRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLNSMWPVV 164
           CRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLNSMWPVV
Sbjct: 189 CRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLNSMWPVV 232

[Close]

BLAST of IVF0010229 vs. NCBI nr
Match: XP_004149695.1 (F-box protein At5g67140 [Cucumis sativus] >KGN61981.1 hypothetical protein Csa_006050 [Cucumis sativus])

HSP 1 Score: 329 bits (844), Expect = 1.14e-112
Identity = 162/164 (98.78%), Postives = 162/164 (98.78%), Query Frame = 0


Query: 1   MDDNSTARLIRHAYSLRELDISRSRWGCQITDHGLYEISLAKCIPNLKSISLWGMAGITD 60
           MDDNSTARLIRHAYSLRELDISRSRWGC ITDHGLYEISLAKCIPNLKSISLWGMAGITD
Sbjct: 72  MDDNSTARLIRHAYSLRELDISRSRWGCHITDHGLYEISLAKCIPNLKSISLWGMAGITD 131

Query: 61  KGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSK 120
           KGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSK
Sbjct: 132 KGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSK 191

Query: 121 CRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLNSMWPVV 164
           CRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLNSMW VV
Sbjct: 192 CRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLNSMWSVV 235

[Close]

BLAST of IVF0010229 vs. NCBI nr
Match: XP_038902095.1 (F-box protein At5g67140-like [Benincasa hispida])

HSP 1 Score: 328 bits (840), Expect = 4.80e-112
Identity = 159/164 (96.95%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MDDNSTARLIRHAYSLRELDISRSRWGCQITDHGLYEISLAKCIPNLKSISLWGMAGITD 60
           MDDNSTARLIRHAYSLRELDISRSRWGCQITDHGL+EISLAKCIPNL+SISLWGMAGITD
Sbjct: 73  MDDNSTARLIRHAYSLRELDISRSRWGCQITDHGLHEISLAKCIPNLRSISLWGMAGITD 132

Query: 61  KGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSK 120
           KGVVQLISRANSLQNLNIGGTFVTDVSL+AIAD+CPNLKTIVLWSCRHVTETGLLILVSK
Sbjct: 133 KGVVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIVLWSCRHVTETGLLILVSK 192

Query: 121 CRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLNSMWPVV 164
           CRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRS+LNSMWPVV
Sbjct: 193 CRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSMLNSMWPVV 236

[Close]

BLAST of IVF0010229 vs. NCBI nr
Match: XP_022947259.1 (F-box protein At5g67140 [Cucurbita moschata])

HSP 1 Score: 315 bits (807), Expect = 4.60e-107
Identity = 156/165 (94.55%), Postives = 161/165 (97.58%), Query Frame = 0


Query: 1   MDDNSTARLIRHAYSLRELDISRSRWGCQITDHGLYEISLAKCIPNLKSISLWGMAGITD 60
           MDD STARLI HAYSLR+LDISRSRWGCQITDHGL+EISLAKCIPNLKSISLWGMAGITD
Sbjct: 69  MDDYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISLWGMAGITD 128

Query: 61  KGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSK 120
           KGVVQLISRANSLQNLNIGGTFVTDVSL+AIAD+CPNLKTI LWSCRHVTETGLLILVSK
Sbjct: 129 KGVVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHVTETGLLILVSK 188

Query: 121 CRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLL-NSMWPVV 164
           CRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLL NSMWPV+
Sbjct: 189 CRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLLNSMWPVL 233

[Close]

BLAST of IVF0010229 vs. NCBI nr
Match: XP_023533904.1 (F-box protein At5g67140 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 315 bits (807), Expect = 4.60e-107
Identity = 156/165 (94.55%), Postives = 161/165 (97.58%), Query Frame = 0


Query: 1   MDDNSTARLIRHAYSLRELDISRSRWGCQITDHGLYEISLAKCIPNLKSISLWGMAGITD 60
           MDD STARLI HAYSLR+LDISRSRWGCQITDHGL+EISLAKCIPNLKSISLWGMAGITD
Sbjct: 69  MDDYSTARLIHHAYSLRQLDISRSRWGCQITDHGLHEISLAKCIPNLKSISLWGMAGITD 128

Query: 61  KGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSK 120
           KGVVQLISRANSLQNLNIGGTFVTDVSL+AIAD+CPNLKTI LWSCRHVTETGLLILVSK
Sbjct: 129 KGVVQLISRANSLQNLNIGGTFVTDVSLFAIADNCPNLKTIGLWSCRHVTETGLLILVSK 188

Query: 121 CRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLL-NSMWPVV 164
           CRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLL NSMWPV+
Sbjct: 189 CRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLLNSMWPVL 233

[Close]

BLAST of IVF0010229 vs. TAIR 10
Match: AT5G67140.1 (F-box/RNI-like superfamily protein )

HSP 1 Score: 240.0 bits (611), Expect = 1.4e-63
Identity = 111/157 (70.70%), Postives = 134/157 (85.35%), Query Frame = 0


Query: 1   MDDNSTARLIRHAYSLRELDISRSRWGCQITDHGLYEISLAKCIPNLKSISLWGMAGITD 60
           MDD+ST+RL+  A++L+ELDISRSRWGC ITD+GLY+I+ A+C+ NL S+SLWGM  ITD
Sbjct: 59  MDDDSTSRLVHLAFNLKELDISRSRWGCHITDNGLYQIASARCVSNLNSVSLWGMTAITD 118

Query: 61  KGVVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSK 120
            GVVQLISR +SLQ+LNIGGTF+TD SL+AIA+ C  LKTI +W CRHVTE GLL+LV+K
Sbjct: 119 SGVVQLISRTSSLQHLNIGGTFITDESLFAIAERCHQLKTIGMWCCRHVTERGLLVLVNK 178

Query: 121 CRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLL 158
           CRKLESIN+WG RVPVDCFI L+ ISP+LQIK   LL
Sbjct: 179 CRKLESINLWGTRVPVDCFIALLTISPALQIKPMELL 215

[Close]

BLAST of IVF0010229 vs. TAIR 10
Match: AT2G25490.1 (EIN3-binding F box protein 1 )

HSP 1 Score: 72.8 bits (177), Expect = 2.9e-13
Identity = 36/102 (35.29%), Postives = 62/102 (60.78%), Query Frame = 0


Query: 29  QITDHGLYEISLAKCIPNLKSISLWGMAGITDKGVVQLISRANSLQNLNIGG-TFVTDVS 88
           +++D GL   S+ +  P+L S+SLW ++ ITD G++++      L+ L +   + +TD  
Sbjct: 163 KVSDLGLR--SIGRSCPSLGSLSLWNVSTITDNGLLEIAEGCAQLEKLELNRCSTITDKG 222

Query: 89  LYAIADSCPNLKTIVLWSCRHVTETGLLILVSKCRKLESINV 130
           L AIA SCPNL  + L +C  + + GLL +   C KL+S+++
Sbjct: 223 LVAIAKSCPNLTELTLEACSRIGDEGLLAIARSCSKLKSVSI 262

[Close]

BLAST of IVF0010229 vs. TAIR 10
Match: AT1G77000.1 (RNI-like superfamily protein )

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-12
Identity = 40/131 (30.53%), Postives = 74/131 (56.49%), Query Frame = 0


Query: 1   MDDNSTARLIRHAYSLRELDISRSRWGCQITDHGLYEISLAKCIPNLKSISLWGMAGITD 60
           ++DN+   +  H + L++LD+S+S    +ITDH LY  SLA+   NL  ++L G    +D
Sbjct: 104 LEDNAVEAIANHCHELQDLDLSKS---SKITDHSLY--SLARGCTNLTKLNLSGCTSFSD 163

Query: 61  KGVVQLISRANSLQNLNIGGTF--VTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILV 120
             +  L      L+ LN+ G    V+D +L AI ++C  L+++ L  C ++++ G++ L 
Sbjct: 164 TALAHLTRFCRKLKILNLCGCVEAVSDNTLQAIGENCNQLQSLNLGWCENISDDGVMSLA 223

Query: 121 SKCRKLESINV 130
             C  L ++++
Sbjct: 224 YGCPDLRTLDL 229

[Close]

BLAST of IVF0010229 vs. TAIR 10
Match: AT1G77000.2 (RNI-like superfamily protein )

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-12
Identity = 40/131 (30.53%), Postives = 74/131 (56.49%), Query Frame = 0


Query: 1   MDDNSTARLIRHAYSLRELDISRSRWGCQITDHGLYEISLAKCIPNLKSISLWGMAGITD 60
           ++DN+   +  H + L++LD+S+S    +ITDH LY  SLA+   NL  ++L G    +D
Sbjct: 104 LEDNAVEAIANHCHELQDLDLSKS---SKITDHSLY--SLARGCTNLTKLNLSGCTSFSD 163

Query: 61  KGVVQLISRANSLQNLNIGGTF--VTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILV 120
             +  L      L+ LN+ G    V+D +L AI ++C  L+++ L  C ++++ G++ L 
Sbjct: 164 TALAHLTRFCRKLKILNLCGCVEAVSDNTLQAIGENCNQLQSLNLGWCENISDDGVMSLA 223

Query: 121 SKCRKLESINV 130
             C  L ++++
Sbjct: 224 YGCPDLRTLDL 229

[Close]

BLAST of IVF0010229 vs. TAIR 10
Match: AT1G21410.1 (F-box/RNI-like superfamily protein )

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-12
Identity = 40/133 (30.08%), Postives = 74/133 (55.64%), Query Frame = 0


Query: 1   MDDNSTARLIRHAYSLRELDISRSRWGCQITDHGLYEISLAKCIPNLKSISLWGMAGITD 60
           ++DN+   +  H + L+ELD+S+S    +ITD  LY  +LA   P+L  ++L G    +D
Sbjct: 104 LEDNAVEAIANHCHELQELDLSKS---LKITDRSLY--ALAHGCPDLTKLNLSGCTSFSD 163

Query: 61  KGVVQLISRANSLQNLNIGGTF--VTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILV 120
             +  L      L+ LN+ G    VTD +L AI ++C  ++++ L  C ++++ G++ L 
Sbjct: 164 TAIAYLTRFCRKLKVLNLCGCVKAVTDNALEAIGNNCNQMQSLNLGWCENISDDGVMSLA 223

Query: 121 SKCRKLESINVWG 132
             C  L ++++ G
Sbjct: 224 YGCPDLRTLDLCG 231

The following BLAST results are available for this feature:

BLAST of IVF0010229 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FH99	1.9e-62	70.70	F-box protein At5g67140 OS=Arabidopsis thaliana OX=3702 GN=At5g67140 PE=2 SV=1	[more]
Q9SKK0	4.1e-12	35.29	EIN3-binding F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=EBF1 PE=1 SV=1	[more]
O49286	1.6e-11	30.53	F-box protein SKP2B OS=Arabidopsis thaliana OX=3702 GN=SKP2B PE=1 SV=1	[more]
Q9LPL4	2.7e-11	30.08	F-box protein SKP2A OS=Arabidopsis thaliana OX=3702 GN=SKP2A PE=1 SV=1	[more]
Q8LB33	1.9e-09	30.84	F-box protein At3g58530 OS=Arabidopsis thaliana OX=3702 GN=At3g58530 PE=2 SV=1	[more]

BLAST of IVF0010229 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E1P2	2.1e-88	100.00	F-box protein At5g67140 OS=Cucumis melo OX=3656 GN=LOC103497375 PE=4 SV=1	[more]
A0A5D3BMX7	2.1e-88	100.00	F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00750 ...	[more]
A0A0A0LPU5	6.9e-87	98.78	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G279180 PE=4 ...	[more]
A0A6J1G699	1.3e-82	94.55	F-box protein At5g67140 OS=Cucurbita moschata OX=3662 GN=LOC111451179 PE=4 SV=1	[more]
A0A6J1KZ61	1.1e-81	93.94	F-box protein At5g67140 OS=Cucurbita maxima OX=3661 GN=LOC111499581 PE=4 SV=1	[more]

BLAST of IVF0010229 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457759.1	1.07e-114	100.00	PREDICTED: F-box protein At5g67140 [Cucumis melo] >XP_008457760.1 PREDICTED: F-b...	[more]
XP_004149695.1	1.14e-112	98.78	F-box protein At5g67140 [Cucumis sativus] >KGN61981.1 hypothetical protein Csa_0...	[more]
XP_038902095.1	4.80e-112	96.95	F-box protein At5g67140-like [Benincasa hispida]	[more]
XP_022947259.1	4.60e-107	94.55	F-box protein At5g67140 [Cucurbita moschata]	[more]
XP_023533904.1	4.60e-107	94.55	F-box protein At5g67140 [Cucurbita pepo subsp. pepo]	[more]

BLAST of IVF0010229 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G67140.1	1.4e-63	70.70	F-box/RNI-like superfamily protein	[more]
AT2G25490.1	2.9e-13	35.29	EIN3-binding F box protein 1	[more]
AT1G77000.1	1.1e-12	30.53	RNI-like superfamily protein	[more]
AT1G77000.2	1.1e-12	30.53	RNI-like superfamily protein	[more]
AT1G21410.1	1.9e-12	30.08	F-box/RNI-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006553	Leucine-rich repeat, cysteine-containing subtype	SMART	SM00367	LRR_CC_2	coord: 95..120 e-value: 5.8E-4 score: 29.2 coord: 44..69 e-value: 1.4 score: 17.9 coord: 70..94 e-value: 11.0 score: 14.2 coord: 13..41 e-value: 150.0 score: 5.4
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 1..157 e-value: 3.9E-27 score: 96.7
None	No IPR available	PANTHER	PTHR16134	F-BOX/TPR REPEAT PROTEIN POF3	coord: 3..153
None	No IPR available	PANTHER	PTHR16134:SF117	SUBFAMILY NOT NAMED	coord: 3..153
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 7..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0010229.1	IVF0010229.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component	GO:0019005	SCF ubiquitin ligase complex