IVF0010213 (gene) Melon (IVF77) v1

Overview


Name	IVF0010213
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag-pol polyprotein
Location	chr06: 3587321 .. 3587698 (-)
RNA-Seq Expression	IVF0010213
Synteny	IVF0010213

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATAATCAGAGAAGGACCATCAGCTTCACGTCCTCCTGTACTGGACGGTAAAAATTACTTTTATTGGAAGCCTCGCATGATATTTTTCATTAAAACCTTGGATGGAAAAGAATGGAGAGCACTTGTTGGTGGTTATGAACCTCCAATGATTACTGTGAATGGAGTATTAGTGCCAAAACCAGAAATTGACTGGAAAGATGCTGAAGGACAAGCTTCAGTTGGAAATGCAAGAGCCATAAATGCTATCTTCAATGATGTCGATTTAAACGTGTTCAAACTTATTAATTCCTGCACTACTGCTAAAGAGGCGTGGAAAATACTGGAAGTTGCATATGAAGGAACTTCTAAAGTGAAGATTCTAGACTGTAGTTGA

mRNA sequence

ATGGAGATAATCAGAGAAGGACCATCAGCTTCACGTCCTCCTGTACTGGACGGTAAAAATTACTTTTATTGGAAGCCTCGCATGATATTTTTCATTAAAACCTTGGATGGAAAAGAATGGAGAGCACTTGTTGGTGGTTATGAACCTCCAATGATTACTGTGAATGGAGTATTAGTGCCAAAACCAGAAATTGACTGGAAAGATGCTGAAGGACAAGCTTCAGTTGGAAATGCAAGAGCCATAAATGCTATCTTCAATGATGTCGATTTAAACGTGTTCAAACTTATTAATTCCTGCACTACTGCTAAAGAGGCGTGGAAAATACTGGAAGTTGCATATGAAGGAACTTCTAAAGTGAAGATTCTAGACTGTAGTTGA

Coding sequence (CDS)

ATGGAGATAATCAGAGAAGGACCATCAGCTTCACGTCCTCCTGTACTGGACGGTAAAAATTACTTTTATTGGAAGCCTCGCATGATATTTTTCATTAAAACCTTGGATGGAAAAGAATGGAGAGCACTTGTTGGTGGTTATGAACCTCCAATGATTACTGTGAATGGAGTATTAGTGCCAAAACCAGAAATTGACTGGAAAGATGCTGAAGGACAAGCTTCAGTTGGAAATGCAAGAGCCATAAATGCTATCTTCAATGATGTCGATTTAAACGTGTTCAAACTTATTAATTCCTGCACTACTGCTAAAGAGGCGTGGAAAATACTGGAAGTTGCATATGAAGGAACTTCTAAAGTGAAGATTCTAGACTGTAGTTGA

Protein sequence

MEIIREGPSASRPPVLDGKNYFYWKPRMIFFIKTLDGKEWRALVGGYEPPMITVNGVLVPKPEIDWKDAEGQASVGNARAINAIFNDVDLNVFKLINSCTTAKEAWKILEVAYEGTSKVKILDCS

Homology

[Close]

BLAST of IVF0010213 vs. ExPASy TrEMBL
Match: A0A5D3BL43 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold252G00200 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 7.1e-68
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MEIIREGPSASRPPVLDGKNYFYWKPRMIFFIKTLDGKEWRALVGGYEPPMITVNGVLVP 60
           MEIIREGPSASRPPVLDGKNYFYWKPRMIFFIKTLDGKEWRALVGGYEPPMITVNGVLVP
Sbjct: 1   MEIIREGPSASRPPVLDGKNYFYWKPRMIFFIKTLDGKEWRALVGGYEPPMITVNGVLVP 60

Query: 61  KPEIDWKDAEGQASVGNARAINAIFNDVDLNVFKLINSCTTAKEAWKILEVAYEGTSKVK 120
           KPEIDWKDAEGQASVGNARAINAIFNDVDLNVFKLINSCTTAKEAWKILEVAYEGTSKVK
Sbjct: 61  KPEIDWKDAEGQASVGNARAINAIFNDVDLNVFKLINSCTTAKEAWKILEVAYEGTSKVK 120

Query: 121 ILDCS 126
           ILDCS
Sbjct: 121 ILDCS 125

[Close]

BLAST of IVF0010213 vs. ExPASy TrEMBL
Match: A0A5A7T6E6 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G001580 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.5e-65
Identity = 122/125 (97.60%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 1   MEIIREGPSASRPPVLDGKNYFYWKPRMIFFIKTLDGKEWRALVGGYEPPMITVNGVLVP 60
           MEIIREGPSASRPPVLDGKNY YWKPRMIFFIKTLDGK WRALVGGYEPPMITVNGVLVP
Sbjct: 1   MEIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDGKAWRALVGGYEPPMITVNGVLVP 60

Query: 61  KPEIDWKDAEGQASVGNARAINAIFNDVDLNVFKLINSCTTAKEAWKILEVAYEGTSKVK 120
           KPEIDW DAEGQASVGNARAINAIFNDVDLNVFKLINSCTTAKEAWKILEVAYEGTSKVK
Sbjct: 61  KPEIDWTDAEGQASVGNARAINAIFNDVDLNVFKLINSCTTAKEAWKILEVAYEGTSKVK 120

Query: 121 ILDCS 126
           ILDCS
Sbjct: 121 ILDCS 125

[Close]

BLAST of IVF0010213 vs. ExPASy TrEMBL
Match: A0A5D3D1H0 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00070 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 3.0e-58
Identity = 111/121 (91.74%), Postives = 113/121 (93.39%), Query Frame = 0


Query: 1   MEIIREGPSASRPPVLDGKNYFYWKPRMIFFIKTLDGKEWRALVGGYEPPMITVNGVLVP 60
           MEIIREGPSASR PVLDGKNY YWKPRMIFFIKTLDGK WRALVGGYEPPM+TVNGV VP
Sbjct: 1   MEIIREGPSASRSPVLDGKNYSYWKPRMIFFIKTLDGKAWRALVGGYEPPMVTVNGVSVP 60

Query: 61  KPEIDWKDAEGQASVGNARAINAIFNDVDLNVFKLINSCTTAKEAWKILEVAYEGTSKVK 120
           KPE+DW DAE QASVGNARAINAIFN VDLN FKLINSCTTAKEAWKILEVAYEGTSKVK
Sbjct: 61  KPEVDWTDAEEQASVGNARAINAIFNCVDLNKFKLINSCTTAKEAWKILEVAYEGTSKVK 120

Query: 121 I 122
           I
Sbjct: 121 I 121

[Close]

BLAST of IVF0010213 vs. ExPASy TrEMBL
Match: A0A5A7TCV9 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold708G00210 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.8e-56
Identity = 106/121 (87.60%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MEIIREGPSASRPPVLDGKNYFYWKPRMIFFIKTLDGKEWRALVGGYEPPMITVNGVLVP 60
           MEIIREGPSASR P+LDGKNY YWKPRMIFFIK LDGK WRALV GY+PPMITVNGVLVP
Sbjct: 1   MEIIREGPSASRSPILDGKNYSYWKPRMIFFIKMLDGKAWRALVAGYDPPMITVNGVLVP 60

Query: 61  KPEIDWKDAEGQASVGNARAINAIFNDVDLNVFKLINSCTTAKEAWKILEVAYEGTSKVK 120
           KPE+DW DAE QASVGNARA+NAIFN VDLNVFKLINSC+T+KEAWK LEVAYEGTSKVK
Sbjct: 61  KPEVDWTDAEEQASVGNARALNAIFNVVDLNVFKLINSCSTSKEAWKTLEVAYEGTSKVK 120

Query: 121 I 122
           I
Sbjct: 121 I 121

[Close]

BLAST of IVF0010213 vs. ExPASy TrEMBL
Match: A0A5D3BGY8 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G00080 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.8e-56
Identity = 107/121 (88.43%), Postives = 109/121 (90.08%), Query Frame = 0


Query: 1   MEIIREGPSASRPPVLDGKNYFYWKPRMIFFIKTLDGKEWRALVGGYEPPMITVNGVLVP 60
           MEIIREGPSASRP VLDGKNYFYWKP MIFFI TLDGK W   VGGYEPPM+TVNGVLVP
Sbjct: 1   MEIIREGPSASRPSVLDGKNYFYWKPCMIFFITTLDGKVWTTFVGGYEPPMVTVNGVLVP 60

Query: 61  KPEIDWKDAEGQASVGNARAINAIFNDVDLNVFKLINSCTTAKEAWKILEVAYEGTSKVK 120
           KPEIDW D E Q SVGNARAINAIFN VDL+VFKLINSCTTAKEAWKILEVAYEGTSKVK
Sbjct: 61  KPEIDWTDVEEQVSVGNARAINAIFNGVDLSVFKLINSCTTAKEAWKILEVAYEGTSKVK 120

Query: 121 I 122
           I
Sbjct: 121 I 121

[Close]

BLAST of IVF0010213 vs. NCBI nr
Match: TYJ99744.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 263 bits (673), Expect = 6.11e-89
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MEIIREGPSASRPPVLDGKNYFYWKPRMIFFIKTLDGKEWRALVGGYEPPMITVNGVLVP 60
           MEIIREGPSASRPPVLDGKNYFYWKPRMIFFIKTLDGKEWRALVGGYEPPMITVNGVLVP
Sbjct: 1   MEIIREGPSASRPPVLDGKNYFYWKPRMIFFIKTLDGKEWRALVGGYEPPMITVNGVLVP 60

Query: 61  KPEIDWKDAEGQASVGNARAINAIFNDVDLNVFKLINSCTTAKEAWKILEVAYEGTSKVK 120
           KPEIDWKDAEGQASVGNARAINAIFNDVDLNVFKLINSCTTAKEAWKILEVAYEGTSKVK
Sbjct: 61  KPEIDWKDAEGQASVGNARAINAIFNDVDLNVFKLINSCTTAKEAWKILEVAYEGTSKVK 120

Query: 121 ILDCS 125
           ILDCS
Sbjct: 121 ILDCS 125

[Close]

BLAST of IVF0010213 vs. NCBI nr
Match: KAA0039062.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 256 bits (653), Expect = 6.88e-86
Identity = 122/125 (97.60%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 1   MEIIREGPSASRPPVLDGKNYFYWKPRMIFFIKTLDGKEWRALVGGYEPPMITVNGVLVP 60
           MEIIREGPSASRPPVLDGKNY YWKPRMIFFIKTLDGK WRALVGGYEPPMITVNGVLVP
Sbjct: 1   MEIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDGKAWRALVGGYEPPMITVNGVLVP 60

Query: 61  KPEIDWKDAEGQASVGNARAINAIFNDVDLNVFKLINSCTTAKEAWKILEVAYEGTSKVK 120
           KPEIDW DAEGQASVGNARAINAIFNDVDLNVFKLINSCTTAKEAWKILEVAYEGTSKVK
Sbjct: 61  KPEIDWTDAEGQASVGNARAINAIFNDVDLNVFKLINSCTTAKEAWKILEVAYEGTSKVK 120

Query: 121 ILDCS 125
           ILDCS
Sbjct: 121 ILDCS 125

[Close]

BLAST of IVF0010213 vs. NCBI nr
Match: TYJ98296.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 224 bits (572), Expect = 1.51e-73
Identity = 107/121 (88.43%), Postives = 109/121 (90.08%), Query Frame = 0


Query: 1   MEIIREGPSASRPPVLDGKNYFYWKPRMIFFIKTLDGKEWRALVGGYEPPMITVNGVLVP 60
           MEIIREGPSASRP VLDGKNYFYWKP MIFFI TLDGK W   VGGYEPPM+TVNGVLVP
Sbjct: 1   MEIIREGPSASRPSVLDGKNYFYWKPCMIFFITTLDGKVWTTFVGGYEPPMVTVNGVLVP 60

Query: 61  KPEIDWKDAEGQASVGNARAINAIFNDVDLNVFKLINSCTTAKEAWKILEVAYEGTSKVK 120
           KPEIDW D E Q SVGNARAINAIFN VDL+VFKLINSCTTAKEAWKILEVAYEGTSKVK
Sbjct: 61  KPEIDWTDVEEQVSVGNARAINAIFNGVDLSVFKLINSCTTAKEAWKILEVAYEGTSKVK 120

[Close]

BLAST of IVF0010213 vs. NCBI nr
Match: KAA0043414.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 221 bits (564), Expect = 2.50e-72
Identity = 108/121 (89.26%), Postives = 109/121 (90.08%), Query Frame = 0


Query: 1   MEIIREGPSASRPPVLDGKNYFYWKPRMIFFIKTLDGKEWRALVGGYEPPMITVNGVLVP 60
           MEIIREGPSASRPPVLDGKNYFYWKP MIFFIKTLDGK W  LVGGYEPPM+TVNGVLVP
Sbjct: 1   MEIIREGPSASRPPVLDGKNYFYWKPCMIFFIKTLDGKVWTTLVGGYEPPMVTVNGVLVP 60

Query: 61  KPEIDWKDAEGQASVGNARAINAIFNDVDLNVFKLINSCTTAKEAWKILEVAYEGTSKVK 120
           KPEID  D E Q SVGNARAINAIFN VDLNVFKLINS T AKEAWKILEVAYEGTSKVK
Sbjct: 61  KPEIDRTDVEEQVSVGNARAINAIFNGVDLNVFKLINSYTIAKEAWKILEVAYEGTSKVK 120

[Close]

BLAST of IVF0010213 vs. NCBI nr
Match: KAA0032462.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK17767.1 gag-proteinase polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 232 bits (591), Expect = 3.88e-72
Identity = 111/121 (91.74%), Postives = 113/121 (93.39%), Query Frame = 0


Query: 1   MEIIREGPSASRPPVLDGKNYFYWKPRMIFFIKTLDGKEWRALVGGYEPPMITVNGVLVP 60
           MEIIREGPSASR PVLDGKNY YWKPRMIFFIKTLDGK WRALVGGYEPPM+TVNGV VP
Sbjct: 1   MEIIREGPSASRSPVLDGKNYSYWKPRMIFFIKTLDGKAWRALVGGYEPPMVTVNGVSVP 60

Query: 61  KPEIDWKDAEGQASVGNARAINAIFNDVDLNVFKLINSCTTAKEAWKILEVAYEGTSKVK 120
           KPE+DW DAE QASVGNARAINAIFN VDLN FKLINSCTTAKEAWKILEVAYEGTSKVK
Sbjct: 61  KPEVDWTDAEEQASVGNARAINAIFNCVDLNKFKLINSCTTAKEAWKILEVAYEGTSKVK 120

The following BLAST results are available for this feature:

BLAST of IVF0010213 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0010213 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BL43	7.1e-68	100.00	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold252G...	[more]
A0A5A7T6E6	1.5e-65	97.60	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G0...	[more]
A0A5D3D1H0	3.0e-58	91.74	Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5A7TCV9	2.8e-56	87.60	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold708G...	[more]
A0A5D3BGY8	4.8e-56	88.43	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G...	[more]

BLAST of IVF0010213 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ99744.1	6.11e-89	100.00	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0039062.1	6.88e-86	97.60	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYJ98296.1	1.51e-73	88.43	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0043414.1	2.50e-72	89.26	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0032462.1	3.88e-72	91.74	gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK17767.1 gag-proteinase...	[more]

BLAST of IVF0010213 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 77..120 e-value: 8.7E-7 score: 28.8
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 5..120
None	No IPR available	PANTHER	PTHR34676:SF8	MYOSIN-11-LIKE	coord: 5..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0010213.1	IVF0010213.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding