IVF0009818 (gene) Melon (IVF77) v1

Overview
NameIVF0009818
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDNA/RNA polymerases superfamily protein
Locationchr03: 11620258 .. 11620464 (+)
RNA-Seq ExpressionIVF0009818
SyntenyIVF0009818
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAAGTATGTGATAGCTTTAGTATTATATGAGGAGGATAACTGTAAGCAATTTGACGAAGGATTAAGGACTGAAATTCAAACTCCAATTACAGCTAGCGCATACTGGTTAAATTTTCATAAGATGGTTGATGCAGTCATGCGAGTTGAAGGGTCTTTGGCTGAAAAAGAAGATAAGAGTTGGAAAAGAGGTCAAGTTCTATGA

mRNA sequence

ATGGCTAAGTATGTGATAGCTTTAGTATTATATGAGGAGGATAACTGTAAGCAATTTGACGAAGGATTAAGGACTGAAATTCAAACTCCAATTACAGCTAGCGCATACTGGTTAAATTTTCATAAGATGGTTGATGCAGTCATGCGAGTTGAAGGGTCTTTGGCTGAAAAAGAAGATAAGAGTTGGAAAAGAGGTCAAGTTCTATGA

Coding sequence (CDS)

ATGGCTAAGTATGTGATAGCTTTAGTATTATATGAGGAGGATAACTGTAAGCAATTTGACGAAGGATTAAGGACTGAAATTCAAACTCCAATTACAGCTAGCGCATACTGGTTAAATTTTCATAAGATGGTTGATGCAGTCATGCGAGTTGAAGGGTCTTTGGCTGAAAAAGAAGATAAGAGTTGGAAAAGAGGTCAAGTTCTATGA

Protein sequence

MAKYVIALVLYEEDNCKQFDEGLRTEIQTPITASAYWLNFHKMVDAVMRVEGSLAEKEDKSWKRGQVL
Homology
BLAST of IVF0009818 vs. ExPASy TrEMBL
Match: A0A5A7VGM1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76G00210 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.9e-09
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 0

Query: 14  DNCKQFDEGLRTEIQTPITASAYWLNFHKMVDAVMRVEGSLAEKEDKSWKR 65
           D CK F+EGLRT IQ P+TASA WLNF KMV+A MRVE +L   E KS+K+
Sbjct: 85  DRCKHFEEGLRTTIQVPVTASANWLNFSKMVEATMRVENTLV-GEKKSFKK 134

BLAST of IVF0009818 vs. ExPASy TrEMBL
Match: A0A5D3CHM7 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00100 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.4e-08
Identity = 26/58 (44.83%), Postives = 43/58 (74.14%), Query Frame = 0

Query: 1   MAKYVIALVLYEEDNCKQFDEGLRTEIQTPITASAYWLNFHKMVDAVMRVEGSLAEKE 59
           +++Y   +V +E D C++F+ GLR EI+TP+TA A W NF ++V+  +RVE S+AE++
Sbjct: 167 LSRYADVIVAFESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSIAEEK 224

BLAST of IVF0009818 vs. ExPASy TrEMBL
Match: A0A5A7VRP7 (Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00360 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.4e-08
Identity = 26/58 (44.83%), Postives = 43/58 (74.14%), Query Frame = 0

Query: 1   MAKYVIALVLYEEDNCKQFDEGLRTEIQTPITASAYWLNFHKMVDAVMRVEGSLAEKE 59
           +++Y   +V +E D C++F+ GLR EI+TP+TA A W NF ++V+  +RVE S+AE++
Sbjct: 188 LSRYADVIVAFESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSIAEEK 245

BLAST of IVF0009818 vs. ExPASy TrEMBL
Match: A0A5A7TLH7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold824G00900 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.5e-08
Identity = 25/58 (43.10%), Postives = 42/58 (72.41%), Query Frame = 0

Query: 1   MAKYVIALVLYEEDNCKQFDEGLRTEIQTPITASAYWLNFHKMVDAVMRVEGSLAEKE 59
           +++Y   ++ YE D C++F+ GLR EI+TP+T  A W NF ++V+  +RVE S+AE++
Sbjct: 220 LSRYADVIIAYESDRCRRFERGLRFEIRTPVTTIAKWTNFSQLVETALRVEQSIAEEK 277

BLAST of IVF0009818 vs. ExPASy TrEMBL
Match: A0A5A7TG44 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G006940 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-07
Identity = 28/58 (48.28%), Postives = 43/58 (74.14%), Query Frame = 0

Query: 1  MAKYVIALVLYEEDNCKQFDEGLRTEIQTPITASAYWLNFHKMVDAVMRVEGSLAEKE 59
          ++KY  +++  E   CK+F EGLR EI+TP+ ASA+W +F K+V+A +RVE SL E++
Sbjct: 13 LSKYATSVIEDEAGRCKRFKEGLRKEIRTPVPASAHWNDFFKLVEAALRVEKSLNERK 70

BLAST of IVF0009818 vs. NCBI nr
Match: KAA0065476.1 (uncharacterized protein E6C27_scaffold17G001750 [Cucumis melo var. makuwa] >TYK08718.1 uncharacterized protein E5676_scaffold76G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 3.21e-12
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 0

Query: 14  DNCKQFDEGLRTEIQTPITASAYWLNFHKMVDAVMRVEGSLAEKEDKSWKR 64
           D CK F+EGLRT IQ P+TASA WLNF KMV+A MRVE +L   E KS+K+
Sbjct: 85  DRCKHFEEGLRTTIQVPVTASANWLNFSKMVEATMRVENTLVG-EKKSFKK 134

BLAST of IVF0009818 vs. NCBI nr
Match: KAA0062762.1 (zf-CCHC domain-containing protein [Cucumis melo var. makuwa] >TYK08836.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 9.36e-11
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 0

Query: 1  MAKYVIALVLYEEDNCKQFDEGLRTEIQTPITASAYWLNFHKMVDAVMRVEGSLAEKEDK 60
          +AKY +A V+ E D CK+F+EGLRTEI+  IT S  W +F K+V+ VM VE  + E +  
Sbjct: 13 LAKYALAFVVNEADKCKRFEEGLRTEIRALITISMDWSDFSKLVEVVMSVEKCMVEDKKN 72

Query: 61 SW 62
          ++
Sbjct: 73 NF 74

BLAST of IVF0009818 vs. NCBI nr
Match: XP_038890030.1 (uncharacterized protein LOC120079741 [Benincasa hispida])

HSP 1 Score: 65.1 bits (157), Expect = 1.41e-10
Identity = 25/58 (43.10%), Postives = 46/58 (79.31%), Query Frame = 0

Query: 1   MAKYVIALVLYEEDNCKQFDEGLRTEIQTPITASAYWLNFHKMVDAVMRVEGSLAEKE 58
           +++Y + ++  E+D C++F++GLR EI+TP+T++A WL+F+++V+   RVE SLA+ E
Sbjct: 162 LSQYALPIIAEEKDRCRKFEQGLRKEIKTPVTSTANWLDFNQLVERATRVERSLADDE 219

BLAST of IVF0009818 vs. NCBI nr
Match: KAA0054440.1 (zf-CCHC domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 2.17e-10
Identity = 28/61 (45.90%), Postives = 43/61 (70.49%), Query Frame = 0

Query: 1  MAKYVIALVLYEEDNCKQFDEGLRTEIQTPITASAYWLNFHKMVDAVMRVEGSLAEKEDK 60
          +AKY ++ ++ +E+ CK F   LRT I+ P+T S  WL+F K+V+A MRVE +LAE++  
Sbjct: 3  LAKYTMSFIM-DEEKCKLFKVDLRTVIRMPVTTSMVWLDFSKLVEAAMRVESALAEEKKS 62

BLAST of IVF0009818 vs. NCBI nr
Match: TYK11035.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 3.37e-10
Identity = 26/58 (44.83%), Postives = 43/58 (74.14%), Query Frame = 0

Query: 1   MAKYVIALVLYEEDNCKQFDEGLRTEIQTPITASAYWLNFHKMVDAVMRVEGSLAEKE 58
           +++Y   +V +E D C++F+ GLR EI+TP+TA A W NF ++V+  +RVE S+AE++
Sbjct: 167 LSRYADVIVAFESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSIAEEK 224

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VGM16.9e-0964.71Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CHM73.4e-0844.83DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7VRP73.4e-0844.83Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuw... [more]
A0A5A7TLH74.5e-0843.10Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82... [more]
A0A5A7TG441.0e-0748.28DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
Match NameE-valueIdentityDescription
KAA0065476.13.21e-1264.71uncharacterized protein E6C27_scaffold17G001750 [Cucumis melo var. makuwa] >TYK0... [more]
KAA0062762.19.36e-1146.77zf-CCHC domain-containing protein [Cucumis melo var. makuwa] >TYK08836.1 zf-CCHC... [more]
XP_038890030.11.41e-1043.10uncharacterized protein LOC120079741 [Benincasa hispida][more]
KAA0054440.12.17e-1045.90zf-CCHC domain-containing protein [Cucumis melo var. makuwa][more]
TYK11035.13.37e-1044.83DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0009818.1IVF0009818.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044237 cellular metabolic process
cellular_component GO:0016020 membrane
molecular_function GO:0005488 binding