IVF0009790 (gene) Melon (IVF77) v1

Overview


Name	IVF0009790
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Small ubiquitin-related modifier
Location	chr03: 16968153 .. 16968440 (+)
RNA-Seq Expression	IVF0009790
Synteny	IVF0009790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATTCTTACTGTAAAAGACAAGAGTTAGAGTTCAGTACCATTGCTTTTCTCGTGGACGGCCATCCCATTGCTGGAACCCAAACCGCGGAAGAGGTTTTTCCAAGCTTTTTCTAAAAGGGGTTCTTTTTTTTTTTTTTTTTTAATTTAAATTTATTTTGATTTCAGTTTTTGTGTGGTCATGTTGGTTGATTTGGGTGTGATTCTCAGCTGGGGTTGGAAGATGGAGATGAAATTGATGCCATGAAACACCACTACGGCGGCGGCGGCGGCGGCGGAGCAATCTGA

mRNA sequence

ATGTATTCTTACTGTAAAAGACAAGAGTTAGAGTTCAGTACCATTGCTTTTCTCGTGGACGGCCATCCCATTGCTGGAACCCAAACCGCGGAAGAGCTGGGGTTGGAAGATGGAGATGAAATTGATGCCATGAAACACCACTACGGCGGCGGCGGCGGCGGCGGAGCAATCTGA

Coding sequence (CDS)

ATGTATTCTTACTGTAAAAGACAAGAGTTAGAGTTCAGTACCATTGCTTTTCTCGTGGACGGCCATCCCATTGCTGGAACCCAAACCGCGGAAGAGCTGGGGTTGGAAGATGGAGATGAAATTGATGCCATGAAACACCACTACGGCGGCGGCGGCGGCGGCGGAGCAATCTGA

Protein sequence

MYSYCKRQELEFSTIAFLVDGHPIAGTQTAEELGLEDGDEIDAMKHHYGGGGGGGAI

Homology

[Close]

BLAST of IVF0009790 vs. ExPASy Swiss-Prot
Match: P55852 (Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana OX=3702 GN=SUMO1 PE=1 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 3.9e-10
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 1  MYSYCKRQELEFSTIAFLVDGHPIAGTQTAEELGLEDGDEIDAMKHHYGGGGGG 55
          M +YC RQ ++ ++IAFL DG  +   QT +EL +EDGDEIDAM H  GG GGG
Sbjct: 44 MNAYCDRQSVDMNSIAFLFDGRRLRAEQTPDELDMEDGDEIDAMLHQTGGSGGG 97

[Close]

BLAST of IVF0009790 vs. ExPASy Swiss-Prot
Match: Q9FLP6 (Small ubiquitin-related modifier 2 OS=Arabidopsis thaliana OX=3702 GN=SUMO2 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.5e-09
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 1  MYSYCKRQELEFSTIAFLVDGHPIAGTQTAEELGLEDGDEIDAMKHHYGGGGGGG 56
          M +YC RQ ++F++IAFL DG  +   QT +EL +EDGDEIDAM H  GGG   G
Sbjct: 43 MNAYCDRQSVDFNSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGGAKNG 97

[Close]

BLAST of IVF0009790 vs. ExPASy Swiss-Prot
Match: P55857 (Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SUMO1 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.5e-09
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 1  MYSYCKRQELEFSTIAFLVDGHPIAGTQTAEELGLEDGDEIDAMKHHYGG 51
          M +YC RQ ++ + IAFL DG  + G QT +EL +EDGDEIDAM H  GG
Sbjct: 47 MNAYCDRQSVDMNAIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 96

[Close]

BLAST of IVF0009790 vs. ExPASy Swiss-Prot
Match: Q9FLP5 (Small ubiquitin-related modifier 3 OS=Arabidopsis thaliana OX=3702 GN=SUMO3 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.3e-05
Identity = 23/50 (46.00%), Postives = 31/50 (62.00%), Query Frame = 0


Query: 1  MYSYCKRQELEFSTIAFLVDGHPIAGTQTAEELGLEDGDEIDAMKHHYGG 51
          MY YC R+ L+    AF+ +G  I G +T +EL +EDGD IDA +   GG
Sbjct: 44 MYVYCDRRGLKLDAFAFIFNGARIGGLETPDELDMEDGDVIDACRAMSGG 93

[Close]

BLAST of IVF0009790 vs. ExPASy Swiss-Prot
Match: B3H5R8 (Putative small ubiquitin-related modifier 8 OS=Arabidopsis thaliana OX=3702 GN=SUMO8 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 3.8e-05
Identity = 24/50 (48.00%), Postives = 31/50 (62.00%), Query Frame = 0


Query: 1  MYSYCKRQELEFSTIAFLVDGHPIAGTQTAEELGLEDGDEIDAMKHHYGG 51
          M++Y  +  +E ST+ FL DG+ I   QT  ELGLED DEI+A     GG
Sbjct: 41 MHAYSDKVGVEMSTLRFLFDGNRIKLNQTPNELGLEDEDEIEAFGEQLGG 90

[Close]

BLAST of IVF0009790 vs. ExPASy TrEMBL
Match: A0A5A7V249 (Small ubiquitin-related modifier 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1465G00130 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.5e-22
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1   MYSYCKRQELEFSTIAFLVDGHPIAGTQTAEELGLEDGDEIDAMKHHYGGGGG 54
           MYSYCKRQELEFSTIAFLVDGHPIAGTQTAEELGLEDGDEIDAMKHHYGGGGG
Sbjct: 52  MYSYCKRQELEFSTIAFLVDGHPIAGTQTAEELGLEDGDEIDAMKHHYGGGGG 104

[Close]

BLAST of IVF0009790 vs. ExPASy TrEMBL
Match: A0A0A0KHV8 (Ubiquitin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G421070 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 8.1e-19
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 1  MYSYCKRQELEFSTIAFLVDGHPIAGTQTAEELGLEDGDEIDAMKHHYGGGGGG 55
          M SYC+RQELEFSTIAFL+DGHPIAGTQTAEELGLEDGDEIDAMKHH GGGG G
Sbjct: 1  MDSYCQRQELEFSTIAFLMDGHPIAGTQTAEELGLEDGDEIDAMKHHCGGGGDG 54

[Close]

BLAST of IVF0009790 vs. ExPASy TrEMBL
Match: A0A6J1I0U8 (small ubiquitin-related modifier 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468415 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-15
Identity = 43/54 (79.63%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MYSYCKRQELEFSTIAFLVDGHPIAGTQTAEELGLEDGDEIDAMKHHYGGGGGG 55
           M  YCKRQ LE  TIAFL+DGH IAG QTA+ELG+EDGDEIDAMKHH GGGGGG
Sbjct: 51  MKGYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDEIDAMKHHGGGGGGG 104

[Close]

BLAST of IVF0009790 vs. ExPASy TrEMBL
Match: A0A6J1GLF8 (Small ubiquitin-related modifier OS=Cucurbita moschata OX=3662 GN=LOC111455344 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 9.3e-15
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 1   MYSYCKRQELEFSTIAFLVDGHPIAGTQTAEELGLEDGDEIDAMKHHYGGGGG 54
           M +YCKRQ LE  TIAFL+DGH IAG QTA+ELG+EDGD+IDAMKHH GGGGG
Sbjct: 52  MKAYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHGGGGGG 104

[Close]

BLAST of IVF0009790 vs. ExPASy TrEMBL
Match: A0A6D2HY34 (Small ubiquitin-related modifier OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS8375 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 9.0e-10
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 0


Query: 1   MYSYCKRQELEFSTIAFLVDGHPIAGTQTAEELGLEDGDEIDAMKHHYGGGGGGGA 57
           M +YC RQ ++F++IAFL DG  +   QT +EL +EDGDEIDAM H  GGGGGGGA
Sbjct: 45  MNAYCDRQSVDFNSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGGGGGGA 100

[Close]

BLAST of IVF0009790 vs. NCBI nr
Match: KAA0061648.1 (small ubiquitin-related modifier 1 [Cucumis melo var. makuwa] >TYK05858.1 small ubiquitin-related modifier 1 [Cucumis melo var. makuwa])

HSP 1 Score: 113 bits (282), Expect = 8.36e-31
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1   MYSYCKRQELEFSTIAFLVDGHPIAGTQTAEELGLEDGDEIDAMKHHYGGGGG 53
           MYSYCKRQELEFSTIAFLVDGHPIAGTQTAEELGLEDGDEIDAMKHHYGGGGG
Sbjct: 52  MYSYCKRQELEFSTIAFLVDGHPIAGTQTAEELGLEDGDEIDAMKHHYGGGGG 104

[Close]

BLAST of IVF0009790 vs. NCBI nr
Match: KGN47962.1 (hypothetical protein Csa_004132 [Cucumis sativus])

HSP 1 Score: 102 bits (253), Expect = 5.53e-27
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 1  MYSYCKRQELEFSTIAFLVDGHPIAGTQTAEELGLEDGDEIDAMKHHYGGGGGG 54
          M SYC+RQELEFSTIAFL+DGHPIAGTQTAEELGLEDGDEIDAMKHH GGGG G
Sbjct: 1  MDSYCQRQELEFSTIAFLMDGHPIAGTQTAEELGLEDGDEIDAMKHHCGGGGDG 54

[Close]

BLAST of IVF0009790 vs. NCBI nr
Match: XP_031743856.1 (small ubiquitin-related modifier 1-like [Cucumis sativus])

HSP 1 Score: 102 bits (253), Expect = 2.25e-26
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 1   MYSYCKRQELEFSTIAFLVDGHPIAGTQTAEELGLEDGDEIDAMKHHYGGGGGG 54
           M SYC+RQELEFSTIAFL+DGHPIAGTQTAEELGLEDGDEIDAMKHH GGGG G
Sbjct: 52  MDSYCQRQELEFSTIAFLMDGHPIAGTQTAEELGLEDGDEIDAMKHHCGGGGDG 105

[Close]

BLAST of IVF0009790 vs. NCBI nr
Match: XP_022969393.1 (small ubiquitin-related modifier 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 91.3 bits (225), Expect = 4.86e-22
Identity = 43/54 (79.63%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MYSYCKRQELEFSTIAFLVDGHPIAGTQTAEELGLEDGDEIDAMKHHYGGGGGG 54
           M  YCKRQ LE  TIAFL+DGH IAG QTA+ELG+EDGDEIDAMKHH GGGGGG
Sbjct: 51  MKGYCKRQALELRTIAFLLDGHAIAGNQTADELGMEDGDEIDAMKHHGGGGGGG 104

[Close]

BLAST of IVF0009790 vs. NCBI nr
Match: XP_023553983.1 (small ubiquitin-related modifier 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 89.0 bits (219), Expect = 3.86e-21
Identity = 41/53 (77.36%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 1   MYSYCKRQELEFSTIAFLVDGHPIAGTQTAEELGLEDGDEIDAMKHHYGGGGG 53
           M +YCKRQ LE  TIAFL+DGH I G QTA+ELG+EDGDEIDAMKHH GGGGG
Sbjct: 51  MKAYCKRQALELGTIAFLLDGHAIVGNQTADELGMEDGDEIDAMKHHGGGGGG 103

[Close]

BLAST of IVF0009790 vs. TAIR 10
Match: AT4G26840.1 (small ubiquitin-like modifier 1 )

HSP 1 Score: 64.7 bits (156), Expect = 2.8e-11
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 1  MYSYCKRQELEFSTIAFLVDGHPIAGTQTAEELGLEDGDEIDAMKHHYGGGGGG 55
          M +YC RQ ++ ++IAFL DG  +   QT +EL +EDGDEIDAM H  GG GGG
Sbjct: 44 MNAYCDRQSVDMNSIAFLFDGRRLRAEQTPDELDMEDGDEIDAMLHQTGGSGGG 97

[Close]

BLAST of IVF0009790 vs. TAIR 10
Match: AT5G55160.1 (small ubiquitin-like modifier 2 )

HSP 1 Score: 62.8 bits (151), Expect = 1.0e-10
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 1  MYSYCKRQELEFSTIAFLVDGHPIAGTQTAEELGLEDGDEIDAMKHHYGGGGGGG 56
          M +YC RQ ++F++IAFL DG  +   QT +EL +EDGDEIDAM H  GGG   G
Sbjct: 43 MNAYCDRQSVDFNSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGGAKNG 97

[Close]

BLAST of IVF0009790 vs. TAIR 10
Match: AT5G55160.2 (small ubiquitin-like modifier 2 )

HSP 1 Score: 62.8 bits (151), Expect = 1.0e-10
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 1   MYSYCKRQELEFSTIAFLVDGHPIAGTQTAEELGLEDGDEIDAMKHHYGGGGGGG 56
           M +YC RQ ++F++IAFL DG  +   QT +EL +EDGDEIDAM H  GGG   G
Sbjct: 56  MNAYCDRQSVDFNSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGGAKNG 110

[Close]

BLAST of IVF0009790 vs. TAIR 10
Match: AT5G55170.1 (small ubiquitin-like modifier 3 )

HSP 1 Score: 49.7 bits (117), Expect = 9.2e-07
Identity = 23/50 (46.00%), Postives = 31/50 (62.00%), Query Frame = 0


Query: 1  MYSYCKRQELEFSTIAFLVDGHPIAGTQTAEELGLEDGDEIDAMKHHYGG 51
          MY YC R+ L+    AF+ +G  I G +T +EL +EDGD IDA +   GG
Sbjct: 44 MYVYCDRRGLKLDAFAFIFNGARIGGLETPDELDMEDGDVIDACRAMSGG 93

[Close]

BLAST of IVF0009790 vs. TAIR 10
Match: AT5G55856.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 48.1 bits (113), Expect = 2.7e-06
Identity = 24/50 (48.00%), Postives = 31/50 (62.00%), Query Frame = 0


Query: 1  MYSYCKRQELEFSTIAFLVDGHPIAGTQTAEELGLEDGDEIDAMKHHYGG 51
          M++Y  +  +E ST+ FL DG+ I   QT  ELGLED DEI+A     GG
Sbjct: 41 MHAYSDKVGVEMSTLRFLFDGNRIKLNQTPNELGLEDEDEIEAFGEQLGG 90

The following BLAST results are available for this feature:

BLAST of IVF0009790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P55852	3.9e-10	55.56	Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana OX=3702 GN=SUMO1 PE=1...	[more]
Q9FLP6	1.5e-09	54.55	Small ubiquitin-related modifier 2 OS=Arabidopsis thaliana OX=3702 GN=SUMO2 PE=1...	[more]
P55857	2.5e-09	56.00	Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica OX=39947 GN=S...	[more]
Q9FLP5	1.3e-05	46.00	Small ubiquitin-related modifier 3 OS=Arabidopsis thaliana OX=3702 GN=SUMO3 PE=1...	[more]
B3H5R8	3.8e-05	48.00	Putative small ubiquitin-related modifier 8 OS=Arabidopsis thaliana OX=3702 GN=S...	[more]

BLAST of IVF0009790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V249	3.5e-22	100.00	Small ubiquitin-related modifier 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A0A0KHV8	8.1e-19	90.74	Ubiquitin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G421...	[more]
A0A6J1I0U8	1.4e-15	79.63	small ubiquitin-related modifier 1-like isoform X2 OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1GLF8	9.3e-15	77.36	Small ubiquitin-related modifier OS=Cucurbita moschata OX=3662 GN=LOC111455344 P...	[more]
A0A6D2HY34	9.0e-10	60.71	Small ubiquitin-related modifier OS=Microthlaspi erraticum OX=1685480 GN=MERR_LO...	[more]

BLAST of IVF0009790 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061648.1	8.36e-31	100.00	small ubiquitin-related modifier 1 [Cucumis melo var. makuwa] >TYK05858.1 small ...	[more]
KGN47962.1	5.53e-27	90.74	hypothetical protein Csa_004132 [Cucumis sativus]	[more]
XP_031743856.1	2.25e-26	90.74	small ubiquitin-related modifier 1-like [Cucumis sativus]	[more]
XP_022969393.1	4.86e-22	79.63	small ubiquitin-related modifier 1-like isoform X2 [Cucurbita maxima]	[more]
XP_023553983.1	3.86e-21	77.36	small ubiquitin-related modifier 1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of IVF0009790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G26840.1	2.8e-11	55.56	small ubiquitin-like modifier 1	[more]
AT5G55160.1	1.0e-10	54.55	small ubiquitin-like modifier 2	[more]
AT5G55160.2	1.0e-10	54.55	small ubiquitin-like modifier 2	[more]
AT5G55170.1	9.2e-07	46.00	small ubiquitin-like modifier 3	[more]
AT5G55856.1	2.7e-06	48.00	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 1..51 e-value: 1.3E-15 score: 59.2
None	No IPR available	PANTHER	PTHR10562:SF104	SMALL UBIQUITIN-RELATED MODIFIER 3	coord: 1..51
None	No IPR available	PANTHER	PTHR10562	SMALL UBIQUITIN-RELATED MODIFIER	coord: 1..51
IPR022617	Rad60/SUMO-like domain	PFAM	PF11976	Rad60-SLD	coord: 3..44 e-value: 1.4E-8 score: 34.4
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 1..50 score: 8.567829
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 2..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0009790.2	IVF0009790.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016925	protein sumoylation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0031386	protein tag
molecular_function	GO:0044389	ubiquitin-like protein ligase binding
molecular_function	GO:0005515	protein binding