IVF0009399 (gene) Melon (IVF77) v1

Overview
NameIVF0009399
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDNA/RNA polymerases superfamily protein
Locationchr11: 11536863 .. 11537207 (+)
RNA-Seq ExpressionIVF0009399
SyntenyIVF0009399
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACCGCAAGAAAGGTCGAGAAGAGGCAGTCAAGTAATAACTGGTGTTCAAGGTACAAGGACCGTTGATAGAGTGCAAGAATCTGACGAGATGTCTTGTAATGCACATAACCTTGTTGGCCAAAACGTGTTGGAAAGCATGTTTGACCGCTTCACTAAAAAATTAAATGATCATTTTATGCCTACACCTACCACTATGTGTAAGAGGTTTGGCATTGAGAGATTAAAGGCGTTGAGAGCAATGACCTTTGAAGGAACCACTAATCCAGTTGATGCAAAGAAGTGGTTGAGTTTGATTGAAAAGTGTTTTGGGGTGTGGAGTGCCTCGAAGAAAGAAAAGTGA

mRNA sequence

ATGGCACCGCAAGAAAGGTCGAGAAGAGGCAGTCAAGTAATAACTGGTGTTCAAGGTACAAGGACCGTTGATAGAGTGCAAGAATCTGACGAGATGTCTTGTAATGCACATAACCTTGTTGGCCAAAACGTGTTGGAAAGCATGTTTGACCGCTTCACTAAAAAATTAAATGATCATTTTATGCCTACACCTACCACTATGTGTAAGAGGTTTGGCATTGAGAGATTAAAGGCGTTGAGAGCAATGACCTTTGAAGGAACCACTAATCCAGTTGATGCAAAGAAGTGGTTGAGTTTGATTGAAAAGTGTTTTGGGGTGTGGAGTGCCTCGAAGAAAGAAAAGTGA

Coding sequence (CDS)

ATGGCACCGCAAGAAAGGTCGAGAAGAGGCAGTCAAGTAATAACTGGTGTTCAAGGTACAAGGACCGTTGATAGAGTGCAAGAATCTGACGAGATGTCTTGTAATGCACATAACCTTGTTGGCCAAAACGTGTTGGAAAGCATGTTTGACCGCTTCACTAAAAAATTAAATGATCATTTTATGCCTACACCTACCACTATGTGTAAGAGGTTTGGCATTGAGAGATTAAAGGCGTTGAGAGCAATGACCTTTGAAGGAACCACTAATCCAGTTGATGCAAAGAAGTGGTTGAGTTTGATTGAAAAGTGTTTTGGGGTGTGGAGTGCCTCGAAGAAAGAAAAGTGA

Protein sequence

MAPQERSRRGSQVITGVQGTRTVDRVQESDEMSCNAHNLVGQNVLESMFDRFTKKLNDHFMPTPTTMCKRFGIERLKALRAMTFEGTTNPVDAKKWLSLIEKCFGVWSASKKEK
Homology
BLAST of IVF0009399 vs. ExPASy TrEMBL
Match: A0A5D3BCS9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold469G00160 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.2e-58
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0

Query: 1   MAPQERSRRGSQVITGVQGTRTVDRVQESDEMSCNAHNLVGQNVLESMFDRFTKKLNDHF 60
           MAPQERSRRGSQVITGVQGTRTVDRVQESDEMSCNAHNLVGQNVLESMFDRFTKKLNDHF
Sbjct: 152 MAPQERSRRGSQVITGVQGTRTVDRVQESDEMSCNAHNLVGQNVLESMFDRFTKKLNDHF 211

Query: 61  MPTPTTMCKRFGIERLKALRAMTFEGTTNPVDAKKWLSLIEKCFGVWSASKKEK 115
           MPTPTTMCKRFGIERLKALRAMTFEGTTNPVDAKKWLSLIEKCFGVWSASKKEK
Sbjct: 212 MPTPTTMCKRFGIERLKALRAMTFEGTTNPVDAKKWLSLIEKCFGVWSASKKEK 265

BLAST of IVF0009399 vs. ExPASy TrEMBL
Match: A0A5A7UG91 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00210 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.0e-56
Identity = 111/114 (97.37%), Postives = 113/114 (99.12%), Query Frame = 0

Query: 1   MAPQERSRRGSQVITGVQGTRTVDRVQESDEMSCNAHNLVGQNVLESMFDRFTKKLNDHF 60
           MAPQERSRRGSQVITGVQGTRTVDRVQESDEMSCNAHNLVGQNVLESMFDRFTKKLNDHF
Sbjct: 1   MAPQERSRRGSQVITGVQGTRTVDRVQESDEMSCNAHNLVGQNVLESMFDRFTKKLNDHF 60

Query: 61  MPTPTTMCKRFGIERLKALRAMTFEGTTNPVDAKKWLSLIEKCFGVWSASKKEK 115
           MPTP+TM KRFGI+RLKALRAMTFEGTTNPVDAKKWLSLIEKCFGVWSASKKEK
Sbjct: 61  MPTPSTMYKRFGIKRLKALRAMTFEGTTNPVDAKKWLSLIEKCFGVWSASKKEK 114

BLAST of IVF0009399 vs. ExPASy TrEMBL
Match: A0A5A7TVM1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00730 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 4.3e-27
Identity = 67/107 (62.62%), Postives = 77/107 (71.96%), Query Frame = 0

Query: 8   RRGSQVITGVQGTRTVDRVQESDEMSCNAHNLVGQNVLESMFDRFTKKLNDHFMPTPTTM 67
           RRG QV   V  TR  +R Q S ++S N H+ V QNV ESMFDRF ++L DHFMP P+T+
Sbjct: 28  RRGRQVAISVPVTRKANRAQASGKISSNPHDSVRQNVEESMFDRFAQRLTDHFMPIPSTV 87

Query: 68  CKRFGIERLKALRAMTFEGTTNPVDAKKWLSLIEKCFGVWSASKKEK 115
            KRFGIERLKAL AMTFEG TN  DA K LSL+EKCFGV    KKE+
Sbjct: 88  DKRFGIERLKALGAMTFEGKTNLADANKCLSLVEKCFGVMKCPKKEE 134

BLAST of IVF0009399 vs. ExPASy TrEMBL
Match: A0A5D3BUF6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00680 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 9.8e-24
Identity = 64/116 (55.17%), Postives = 80/116 (68.97%), Query Frame = 0

Query: 1   MAPQERSRRGSQVITGVQGTRTVDRVQESDEMSCNAHNLVGQNVLESMFDRFTKKLNDHF 60
           MAP+ER R   QV  GV  T + ++VQES+E+S N ++ + QN  +SMFDRF ++L DHF
Sbjct: 1   MAPRERVRICRQVTIGVPATESANKVQESNEISNNPYDPIKQNTEKSMFDRFGQRLVDHF 60

Query: 61  MPTPTTMCKRFGIERLKALRAMTFEGTTNPVDAKKWLSLIEKCFGV--WSASKKEK 115
           MPTP  + KRF IERL+AL A TFE T N  D KKWL+LIEK FGV  W   +K K
Sbjct: 61  MPTPFIVDKRFNIERLRALGATTFEETKNLADTKKWLNLIEKYFGVMEWPEERKVK 116

BLAST of IVF0009399 vs. ExPASy TrEMBL
Match: A0A5D3DXF8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00110 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.0e-21
Identity = 59/99 (59.60%), Postives = 70/99 (70.71%), Query Frame = 0

Query: 16  GVQGTRTVDRVQESDEMSCNAHNLVGQNVLESMFDRFTKKLNDHFMPTPTTMCKRFGIER 75
           GV  T + +RVQES+++S N H+ VGQN  E MFDRF ++L D FMPT +T+ KR  IE 
Sbjct: 2   GVFITTSANRVQESNDISSNPHDPVGQNAEERMFDRFAQRLVDCFMPTTSTVDKRLRIEI 61

Query: 76  LKALRAMTFEGTTNPVDAKKWLSLIEKCFGVWSASKKEK 115
           LKAL AMTFEGTTNP DAKKWLSLIE    V    K +K
Sbjct: 62  LKALEAMTFEGTTNPTDAKKWLSLIENKIRVMECPKDKK 100

BLAST of IVF0009399 vs. NCBI nr
Match: TYJ97632.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 233 bits (593), Expect = 6.18e-75
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0

Query: 1   MAPQERSRRGSQVITGVQGTRTVDRVQESDEMSCNAHNLVGQNVLESMFDRFTKKLNDHF 60
           MAPQERSRRGSQVITGVQGTRTVDRVQESDEMSCNAHNLVGQNVLESMFDRFTKKLNDHF
Sbjct: 152 MAPQERSRRGSQVITGVQGTRTVDRVQESDEMSCNAHNLVGQNVLESMFDRFTKKLNDHF 211

Query: 61  MPTPTTMCKRFGIERLKALRAMTFEGTTNPVDAKKWLSLIEKCFGVWSASKKEK 114
           MPTPTTMCKRFGIERLKALRAMTFEGTTNPVDAKKWLSLIEKCFGVWSASKKEK
Sbjct: 212 MPTPTTMCKRFGIERLKALRAMTFEGTTNPVDAKKWLSLIEKCFGVWSASKKEK 265

BLAST of IVF0009399 vs. NCBI nr
Match: KAA0053236.1 (uncharacterized protein E6C27_scaffold102G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 225 bits (574), Expect = 3.43e-74
Identity = 111/114 (97.37%), Postives = 113/114 (99.12%), Query Frame = 0

Query: 1   MAPQERSRRGSQVITGVQGTRTVDRVQESDEMSCNAHNLVGQNVLESMFDRFTKKLNDHF 60
           MAPQERSRRGSQVITGVQGTRTVDRVQESDEMSCNAHNLVGQNVLESMFDRFTKKLNDHF
Sbjct: 1   MAPQERSRRGSQVITGVQGTRTVDRVQESDEMSCNAHNLVGQNVLESMFDRFTKKLNDHF 60

Query: 61  MPTPTTMCKRFGIERLKALRAMTFEGTTNPVDAKKWLSLIEKCFGVWSASKKEK 114
           MPTP+TM KRFGI+RLKALRAMTFEGTTNPVDAKKWLSLIEKCFGVWSASKKEK
Sbjct: 61  MPTPSTMYKRFGIKRLKALRAMTFEGTTNPVDAKKWLSLIEKCFGVWSASKKEK 114

BLAST of IVF0009399 vs. NCBI nr
Match: KAA0047014.1 (hypothetical protein E6C27_scaffold230G002160 [Cucumis melo var. makuwa] >TYK04769.1 hypothetical protein E5676_scaffold68G00730 [Cucumis melo var. makuwa])

HSP 1 Score: 128 bits (322), Expect = 1.69e-35
Identity = 67/106 (63.21%), Postives = 76/106 (71.70%), Query Frame = 0

Query: 8   RRGSQVITGVQGTRTVDRVQESDEMSCNAHNLVGQNVLESMFDRFTKKLNDHFMPTPTTM 67
           RRG QV   V  TR  +R Q S ++S N H+ V QNV ESMFDRF ++L DHFMP P+T+
Sbjct: 28  RRGRQVAISVPVTRKANRAQASGKISSNPHDSVRQNVEESMFDRFAQRLTDHFMPIPSTV 87

Query: 68  CKRFGIERLKALRAMTFEGTTNPVDAKKWLSLIEKCFGVWSASKKE 113
            KRFGIERLKAL AMTFEG TN  DA K LSL+EKCFGV    KKE
Sbjct: 88  DKRFGIERLKALGAMTFEGKTNLADANKCLSLVEKCFGVMKCPKKE 133

BLAST of IVF0009399 vs. NCBI nr
Match: KAA0039561.1 (hypothetical protein E6C27_scaffold744G00310 [Cucumis melo var. makuwa] >TYK01739.1 hypothetical protein E5676_scaffold775G00680 [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (292), Expect = 4.80e-31
Identity = 64/116 (55.17%), Postives = 80/116 (68.97%), Query Frame = 0

Query: 1   MAPQERSRRGSQVITGVQGTRTVDRVQESDEMSCNAHNLVGQNVLESMFDRFTKKLNDHF 60
           MAP+ER R   QV  GV  T + ++VQES+E+S N ++ + QN  +SMFDRF ++L DHF
Sbjct: 1   MAPRERVRICRQVTIGVPATESANKVQESNEISNNPYDPIKQNTEKSMFDRFGQRLVDHF 60

Query: 61  MPTPTTMCKRFGIERLKALRAMTFEGTTNPVDAKKWLSLIEKCFGV--WSASKKEK 114
           MPTP  + KRF IERL+AL A TFE T N  D KKWL+LIEK FGV  W   +K K
Sbjct: 61  MPTPFIVDKRFNIERLRALGATTFEETKNLADTKKWLNLIEKYFGVMEWPEERKVK 116

BLAST of IVF0009399 vs. NCBI nr
Match: TYK28108.1 (hypothetical protein E5676_scaffold289G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (274), Expect = 2.31e-28
Identity = 59/99 (59.60%), Postives = 70/99 (70.71%), Query Frame = 0

Query: 16  GVQGTRTVDRVQESDEMSCNAHNLVGQNVLESMFDRFTKKLNDHFMPTPTTMCKRFGIER 75
           GV  T + +RVQES+++S N H+ VGQN  E MFDRF ++L D FMPT +T+ KR  IE 
Sbjct: 2   GVFITTSANRVQESNDISSNPHDPVGQNAEERMFDRFAQRLVDCFMPTTSTVDKRLRIEI 61

Query: 76  LKALRAMTFEGTTNPVDAKKWLSLIEKCFGVWSASKKEK 114
           LKAL AMTFEGTTNP DAKKWLSLIE    V    K +K
Sbjct: 62  LKALEAMTFEGTTNPTDAKKWLSLIENKIRVMECPKDKK 100

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BCS91.2e-58100.00Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold469G0016... [more]
A0A5A7UG912.0e-5697.37Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TVM14.3e-2762.62Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BUF69.8e-2455.17Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DXF82.0e-2159.60Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
TYJ97632.16.18e-75100.00gag/pol protein [Cucumis melo var. makuwa][more]
KAA0053236.13.43e-7497.37uncharacterized protein E6C27_scaffold102G00210 [Cucumis melo var. makuwa][more]
KAA0047014.11.69e-3563.21hypothetical protein E6C27_scaffold230G002160 [Cucumis melo var. makuwa] >TYK047... [more]
KAA0039561.14.80e-3155.17hypothetical protein E6C27_scaffold744G00310 [Cucumis melo var. makuwa] >TYK0173... [more]
TYK28108.12.31e-2859.60hypothetical protein E5676_scaffold289G00110 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0009399.1IVF0009399.1mRNA