IVF0009318 (gene) Melon (IVF77) v1

Overview
NameIVF0009318
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionCCHC-type domain-containing protein
Locationchr08: 15075816 .. 15075977 (+)
RNA-Seq ExpressionIVF0009318
SyntenyIVF0009318
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGTAACGAAGGCTGTACACGAACGCACAAACGTAAGGAACGAGGATGGCGAATGGACGATGAACAAGCACAACAGTGACAGATGCAACGGTGGCTGGGCACGAGGGACGACGACAACTGTGTGCGCAGTGACTATTCGCCAGAGAAGAGAGGGTTGA

mRNA sequence

ATGGTGGTAACGAAGGCTGTACACGAACGCACAAACGTAAGGAACGAGGATGGCGAATGGACGATGAACAAGCACAACAGTGACAGATGCAACGGTGGCTGGGCACGAGGGACGACGACAACTGTGTGCGCAGTGACTATTCGCCAGAGAAGAGAGGGTTGA

Coding sequence (CDS)

ATGGTGGTAACGAAGGCTGTACACGAACGCACAAACGTAAGGAACGAGGATGGCGAATGGACGATGAACAAGCACAACAGTGACAGATGCAACGGTGGCTGGGCACGAGGGACGACGACAACTGTGTGCGCAGTGACTATTCGCCAGAGAAGAGAGGGTTGA

Protein sequence

MVVTKAVHERTNVRNEDGEWTMNKHNSDRCNGGWARGTTTTVCAVTIRQRREG
Homology
[Close]
BLAST of IVF0009318 vs. ExPASy TrEMBL
Match: A0A5D3BNP4 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G00460 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.9e-07
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 0 

Query: 5  KAVHERTNVRNEDGEWTMNKHNSDRCNGGWARGTTTTVCAVTIR 49
          K  H+R N+RNEDG+ T N+HNSDR NGGWARGTTTTV A  I+
Sbjct: 2  KVGHKRANIRNEDGKRTTNEHNSDRRNGGWARGTTTTVRAGVIQ 45

[Close]
BLAST of IVF0009318 vs. NCBI nr
Match: TYK00887.1 (uncharacterized protein E5676_scaffold602G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 1.77e-10
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 0 

Query: 5  KAVHERTNVRNEDGEWTMNKHNSDRCNGGWARGTTTTVCAVTIR 48
          K  H+R N+RNEDG+ T N+HNSDR NGGWARGTTTTV A  I+
Sbjct: 2  KVGHKRANIRNEDGKRTTNEHNSDRRNGGWARGTTTTVRAGVIQ 45

The following BLAST results are available for this feature:
BLAST of IVF0009318 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0009318 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BNP43.9e-0768.18CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
BLAST of IVF0009318 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK00887.11.77e-1068.18uncharacterized protein E5676_scaffold602G00460 [Cucumis melo var. makuwa][more]
BLAST of IVF0009318 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0009318.1IVF0009318.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding