Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACCTACGATCACACTGGATAATATATTATATCACTGGAGAATATGTACGAGGCATAACACTTTATCTAAGTTATACTTGTCCGCTCGTTCGTTAGAGCCTTGCAAGCATGTGACGCAACGATTTACAGACTGGTGGGCCACAAGGCACGAGACCTATTTTGATGATAACATACATCATTTGATGAGTAGTGCCATTCATCTCCCTTTACAGCCCAAACTACCCAAGAACCGAGGGAGCAACCTGGGTGGTAATGAAATTCGCTTGGTTGAGGCGATGGCTGCTACTCTCGAGGAGGAGATAAATGAGCATAAAGATGAAAGCGATAGCAGAAAAAGTGATTGTCATTGGAAGAGACCTTTGAAGAAAGCGAATGTACCAGGTAATGATCCCAACGGAAGGGGTTCAAGTGCTTTGGGCGACCCAACGTTCCACCATTAG
mRNA sequence
ATGTCACCTACGATCACACTGGATAATATATTATATCACTGGAGAATATGTACGAGGCATAACACTTTATCTAAGTTATACTTGTCCGCTCGTTCGTTAGAGCCTTGCAAGCATGTGACGCAACGATTTACAGACTGGTGGGCCACAAGGCACGAGACCTATTTTGATGATAACATACATCATTTGATGAGTAGTGCCATTCATCTCCCTTTACAGCCCAAACTACCCAAGAACCGAGGGAGCAACCTGGGTGGTAATGAAATTCGCTTGGTTGAGGCGATGGCTGCTACTCTCGAGGAGGAGATAAATGAGCATAAAGATGAAAGCGATAGCAGAAAAAGTGATTGTCATTGGAAGAGACCTTTGAAGAAAGCGAATGTACCAGGTAATGATCCCAACGGAAGGGGTTCAAGTGCTTTGGGCGACCCAACGTTCCACCATTAG
Coding sequence (CDS)
ATGTCACCTACGATCACACTGGATAATATATTATATCACTGGAGAATATGTACGAGGCATAACACTTTATCTAAGTTATACTTGTCCGCTCGTTCGTTAGAGCCTTGCAAGCATGTGACGCAACGATTTACAGACTGGTGGGCCACAAGGCACGAGACCTATTTTGATGATAACATACATCATTTGATGAGTAGTGCCATTCATCTCCCTTTACAGCCCAAACTACCCAAGAACCGAGGGAGCAACCTGGGTGGTAATGAAATTCGCTTGGTTGAGGCGATGGCTGCTACTCTCGAGGAGGAGATAAATGAGCATAAAGATGAAAGCGATAGCAGAAAAAGTGATTGTCATTGGAAGAGACCTTTGAAGAAAGCGAATGTACCAGGTAATGATCCCAACGGAAGGGGTTCAAGTGCTTTGGGCGACCCAACGTTCCACCATTAG
Protein sequence
MSPTITLDNILYHWRICTRHNTLSKLYLSARSLEPCKHVTQRFTDWWATRHETYFDDNIHHLMSSAIHLPLQPKLPKNRGSNLGGNEIRLVEAMAATLEEEINEHKDESDSRKSDCHWKRPLKKANVPGNDPNGRGSSALGDPTFHH
Homology
BLAST of IVF0008990 vs. ExPASy TrEMBL
Match:
A0A5D3D2A0 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003250 PE=4 SV=1)
HSP 1 Score: 243.4 bits (620), Expect = 5.8e-61
Identity = 115/147 (78.23%), Postives = 126/147 (85.71%), Query Frame = 0
Query: 1 MSPTITLDNILYHWRICTRHNTLSKLYLSARSLEPCKHVTQRFTDWWATRHETYFDDNIH 60
M P IT DN+L+HWRICTRHNTL++LYL ARSLEPCKHVTQRFTDWW+ RH TYF+DNIH
Sbjct: 458 MPPAITPDNMLHHWRICTRHNTLTELYLPARSLEPCKHVTQRFTDWWSMRHGTYFEDNIH 517
Query: 61 HLMSSAIHLPLQPKLPKNRGSNLGGNEIRLVEAMAATLEEEINEHKDESDSRKSDCHWKR 120
HL+SS I P QPKLPKNRG+NLGG EIRLVEAMAATLEEEINEHKDE+DS KSD HWKR
Sbjct: 518 HLVSSVIPPPSQPKLPKNRGTNLGGKEIRLVEAMAATLEEEINEHKDETDSSKSDRHWKR 577
Query: 121 PLKKANVPGNDPNGRGSSALGDPTFHH 148
PLKKA V +DP+ RGSSALG P H
Sbjct: 578 PLKKAKVSSDDPDERGSSALGSPLNAH 604
BLAST of IVF0008990 vs. ExPASy TrEMBL
Match:
A0A5A7SQC9 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold506G00140 PE=4 SV=1)
HSP 1 Score: 233.8 bits (595), Expect = 4.6e-58
Identity = 111/143 (77.62%), Postives = 119/143 (83.22%), Query Frame = 0
Query: 1 MSPTITLDNILYHWRICTRHNTLSKLYLSARSLEPCKHVTQRFTDWWATRHETYFDDNIH 60
M P ITLDNILYHWRICTR NTLS+LYL RSLEPCKHVTQRFTDWW T+H TYF+DN H
Sbjct: 165 MPPAITLDNILYHWRICTRRNTLSELYLPTRSLEPCKHVTQRFTDWWTTKHGTYFEDNRH 224
Query: 61 HLMSSAIHLPLQPKLPKNRGSNLGGNEIRLVEAMAATLEEEINEHKDESDSRKSDCHWKR 120
HL+SS I P QP+LPKNRGSNLGG EIRLVEAMA LEEE+ EHKDESDS KSD HWKR
Sbjct: 225 HLVSSVIPPPSQPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKR 284
Query: 121 PLKKANVPGNDPNGRGSSALGDP 144
PLKKA V G+ P+GRG SAL P
Sbjct: 285 PLKKAKVSGDHPDGRGLSALEVP 307
BLAST of IVF0008990 vs. ExPASy TrEMBL
Match:
A0A5D3CXA5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003220 PE=4 SV=1)
HSP 1 Score: 233.4 bits (594), Expect = 6.0e-58
Identity = 111/143 (77.62%), Postives = 121/143 (84.62%), Query Frame = 0
Query: 1 MSPTITLDNILYHWRICTRHNTLSKLYLSARSLEPCKHVTQRFTDWWATRHETYFDDNIH 60
M P ITL+NILYHWRICTR NTLSKLYL+ARSLEPCKHVTQ+FT+WW TRH TYF+DN H
Sbjct: 66 MPPAITLNNILYHWRICTRRNTLSKLYLAARSLEPCKHVTQQFTNWWTTRHGTYFEDNRH 125
Query: 61 HLMSSAIHLPLQPKLPKNRGSNLGGNEIRLVEAMAATLEEEINEHKDESDSRKSDCHWKR 120
HLMSSAI P QPKLPKNRGSNLGG +IRLVE M LEEE+ EHKDESDS KSD HWKR
Sbjct: 126 HLMSSAIPPPSQPKLPKNRGSNLGGKKIRLVEVMTPNLEEEVKEHKDESDSSKSDRHWKR 185
Query: 121 PLKKANVPGNDPNGRGSSALGDP 144
PLKKA V ++P+GRG SALG P
Sbjct: 186 PLKKAKVSCDNPDGRGLSALGVP 208
BLAST of IVF0008990 vs. ExPASy TrEMBL
Match:
A0A5A7TX42 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00950 PE=4 SV=1)
HSP 1 Score: 232.6 bits (592), Expect = 1.0e-57
Identity = 112/143 (78.32%), Postives = 120/143 (83.92%), Query Frame = 0
Query: 1 MSPTITLDNILYHWRICTRHNTLSKLYLSARSLEPCKHVTQRFTDWWATRHETYFDDNIH 60
MSP ITLDNILYHWRICTR NTLS+LYL ARSLEPCKHVTQRFTDWW T+H TYF+DN H
Sbjct: 484 MSPAITLDNILYHWRICTRRNTLSELYLPARSLEPCKHVTQRFTDWWTTKHGTYFEDNRH 543
Query: 61 HLMSSAIHLPLQPKLPKNRGSNLGGNEIRLVEAMAATLEEEINEHKDESDSRKSDCHWKR 120
HL+SSAI QP+LPKNRGSNLGG EIRLVEAMA LEEE+ E KDESDS KSD HWKR
Sbjct: 544 HLVSSAIPPSSQPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVKERKDESDSSKSDRHWKR 603
Query: 121 PLKKANVPGNDPNGRGSSALGDP 144
PLKKA V G+ P+GRG SAL P
Sbjct: 604 PLKKAKVSGDHPDGRGLSALEVP 626
BLAST of IVF0008990 vs. ExPASy TrEMBL
Match:
A0A5A7SHN8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1204G00400 PE=4 SV=1)
HSP 1 Score: 230.7 bits (587), Expect = 3.9e-57
Identity = 111/143 (77.62%), Postives = 118/143 (82.52%), Query Frame = 0
Query: 1 MSPTITLDNILYHWRICTRHNTLSKLYLSARSLEPCKHVTQRFTDWWATRHETYFDDNIH 60
M P ITLDNILYHWRICTR NTLS+LYL ARSLEPCKHVTQRFTDWW T+H TYF+DN H
Sbjct: 484 MPPAITLDNILYHWRICTRRNTLSELYLPARSLEPCKHVTQRFTDWWTTKHGTYFEDNRH 543
Query: 61 HLMSSAIHLPLQPKLPKNRGSNLGGNEIRLVEAMAATLEEEINEHKDESDSRKSDCHWKR 120
HL+SSAI P Q +LPKNRG NLGG EIRLVEAMA LEEE+ EHKDESDS KSD HWKR
Sbjct: 544 HLVSSAIPPPSQSRLPKNRGRNLGGKEIRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKR 603
Query: 121 PLKKANVPGNDPNGRGSSALGDP 144
PLKKA V G+ PN RG SAL P
Sbjct: 604 PLKKAEVSGDHPNERGLSALEVP 626
BLAST of IVF0008990 vs. NCBI nr
Match:
TYK16513.1 (hypothetical protein E5676_scaffold21G003220 [Cucumis melo var. makuwa])
HSP 1 Score: 231 bits (590), Expect = 6.92e-73
Identity = 111/143 (77.62%), Postives = 121/143 (84.62%), Query Frame = 0
Query: 1 MSPTITLDNILYHWRICTRHNTLSKLYLSARSLEPCKHVTQRFTDWWATRHETYFDDNIH 60
M P ITL+NILYHWRICTR NTLSKLYL+ARSLEPCKHVTQ+FT+WW TRH TYF+DN H
Sbjct: 66 MPPAITLNNILYHWRICTRRNTLSKLYLAARSLEPCKHVTQQFTNWWTTRHGTYFEDNRH 125
Query: 61 HLMSSAIHLPLQPKLPKNRGSNLGGNEIRLVEAMAATLEEEINEHKDESDSRKSDCHWKR 120
HLMSSAI P QPKLPKNRGSNLGG +IRLVE M LEEE+ EHKDESDS KSD HWKR
Sbjct: 126 HLMSSAIPPPSQPKLPKNRGSNLGGKKIRLVEVMTPNLEEEVKEHKDESDSSKSDRHWKR 185
Query: 121 PLKKANVPGNDPNGRGSSALGDP 143
PLKKA V ++P+GRG SALG P
Sbjct: 186 PLKKAKVSCDNPDGRGLSALGVP 208
BLAST of IVF0008990 vs. NCBI nr
Match:
KAA0042070.1 (hypothetical protein E6C27_scaffold67G005320 [Cucumis melo var. makuwa] >TYK18012.1 hypothetical protein E5676_scaffold306G003250 [Cucumis melo var. makuwa])
HSP 1 Score: 242 bits (617), Expect = 3.77e-72
Identity = 115/147 (78.23%), Postives = 126/147 (85.71%), Query Frame = 0
Query: 1 MSPTITLDNILYHWRICTRHNTLSKLYLSARSLEPCKHVTQRFTDWWATRHETYFDDNIH 60
M P IT DN+L+HWRICTRHNTL++LYL ARSLEPCKHVTQRFTDWW+ RH TYF+DNIH
Sbjct: 458 MPPAITPDNMLHHWRICTRHNTLTELYLPARSLEPCKHVTQRFTDWWSMRHGTYFEDNIH 517
Query: 61 HLMSSAIHLPLQPKLPKNRGSNLGGNEIRLVEAMAATLEEEINEHKDESDSRKSDCHWKR 120
HL+SS I P QPKLPKNRG+NLGG EIRLVEAMAATLEEEINEHKDE+DS KSD HWKR
Sbjct: 518 HLVSSVIPPPSQPKLPKNRGTNLGGKEIRLVEAMAATLEEEINEHKDETDSSKSDRHWKR 577
Query: 121 PLKKANVPGNDPNGRGSSALGDPTFHH 147
PLKKA V +DP+ RGSSALG P H
Sbjct: 578 PLKKAKVSSDDPDERGSSALGSPLNAH 604
BLAST of IVF0008990 vs. NCBI nr
Match:
KAA0031751.1 (hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa])
HSP 1 Score: 232 bits (591), Expect = 6.53e-70
Identity = 111/143 (77.62%), Postives = 119/143 (83.22%), Query Frame = 0
Query: 1 MSPTITLDNILYHWRICTRHNTLSKLYLSARSLEPCKHVTQRFTDWWATRHETYFDDNIH 60
M P ITLDNILYHWRICTR NTLS+LYL RSLEPCKHVTQRFTDWW T+H TYF+DN H
Sbjct: 165 MPPAITLDNILYHWRICTRRNTLSELYLPTRSLEPCKHVTQRFTDWWTTKHGTYFEDNRH 224
Query: 61 HLMSSAIHLPLQPKLPKNRGSNLGGNEIRLVEAMAATLEEEINEHKDESDSRKSDCHWKR 120
HL+SS I P QP+LPKNRGSNLGG EIRLVEAMA LEEE+ EHKDESDS KSD HWKR
Sbjct: 225 HLVSSVIPPPSQPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKR 284
Query: 121 PLKKANVPGNDPNGRGSSALGDP 143
PLKKA V G+ P+GRG SAL P
Sbjct: 285 PLKKAKVSGDHPDGRGLSALEVP 307
BLAST of IVF0008990 vs. NCBI nr
Match:
KAA0057575.1 (hypothetical protein E6C27_scaffold497G00470 [Cucumis melo var. makuwa])
HSP 1 Score: 224 bits (570), Expect = 3.57e-68
Identity = 109/143 (76.22%), Postives = 118/143 (82.52%), Query Frame = 0
Query: 1 MSPTITLDNILYHWRICTRHNTLSKLYLSARSLEPCKHVTQRFTDWWATRHETYFDDNIH 60
M P ITLDNILYHWRIC R NTLS+LYL ARSLEPCKHVTQRFTDWW T+H TYF+DN H
Sbjct: 308 MPPAITLDNILYHWRICMRRNTLSELYLPARSLEPCKHVTQRFTDWWTTKHGTYFEDNRH 367
Query: 61 HLMSSAIHLPLQPKLPKNRGSNLGGNEIRLVEAMAATLEEEINEHKDESDSRKSDCHWKR 120
HL+SSAI P QP+LPKNRGSNLGG EIRLVEAMA LE+E+NEH ESDS KSD HWKR
Sbjct: 368 HLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMAPNLEDEVNEH--ESDSNKSDRHWKR 427
Query: 121 PLKKANVPGNDPNGRGSSALGDP 143
PLKK V G+ P+GRG SAL P
Sbjct: 428 PLKKTKVSGDHPDGRGLSALEVP 448
BLAST of IVF0008990 vs. NCBI nr
Match:
KAA0047478.1 (hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa])
HSP 1 Score: 231 bits (588), Expect = 9.64e-68
Identity = 112/143 (78.32%), Postives = 120/143 (83.92%), Query Frame = 0
Query: 1 MSPTITLDNILYHWRICTRHNTLSKLYLSARSLEPCKHVTQRFTDWWATRHETYFDDNIH 60
MSP ITLDNILYHWRICTR NTLS+LYL ARSLEPCKHVTQRFTDWW T+H TYF+DN H
Sbjct: 484 MSPAITLDNILYHWRICTRRNTLSELYLPARSLEPCKHVTQRFTDWWTTKHGTYFEDNRH 543
Query: 61 HLMSSAIHLPLQPKLPKNRGSNLGGNEIRLVEAMAATLEEEINEHKDESDSRKSDCHWKR 120
HL+SSAI QP+LPKNRGSNLGG EIRLVEAMA LEEE+ E KDESDS KSD HWKR
Sbjct: 544 HLVSSAIPPSSQPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVKERKDESDSSKSDRHWKR 603
Query: 121 PLKKANVPGNDPNGRGSSALGDP 143
PLKKA V G+ P+GRG SAL P
Sbjct: 604 PLKKAKVSGDHPDGRGLSALEVP 626
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3D2A0 | 5.8e-61 | 78.23 | PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... | [more] |
A0A5A7SQC9 | 4.6e-58 | 77.62 | PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... | [more] |
A0A5D3CXA5 | 6.0e-58 | 77.62 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7TX42 | 1.0e-57 | 78.32 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7SHN8 | 3.9e-57 | 77.62 | PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... | [more] |
Match Name | E-value | Identity | Description | |
TYK16513.1 | 6.92e-73 | 77.62 | hypothetical protein E5676_scaffold21G003220 [Cucumis melo var. makuwa] | [more] |
KAA0042070.1 | 3.77e-72 | 78.23 | hypothetical protein E6C27_scaffold67G005320 [Cucumis melo var. makuwa] >TYK1801... | [more] |
KAA0031751.1 | 6.53e-70 | 77.62 | hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa] | [more] |
KAA0057575.1 | 3.57e-68 | 76.22 | hypothetical protein E6C27_scaffold497G00470 [Cucumis melo var. makuwa] | [more] |
KAA0047478.1 | 9.64e-68 | 78.32 | hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |