IVF0008990 (gene) Melon (IVF77) v1

Overview
NameIVF0008990
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPMD domain-containing protein
Locationchr08: 10590618 .. 10591061 (+)
RNA-Seq ExpressionIVF0008990
SyntenyIVF0008990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACCTACGATCACACTGGATAATATATTATATCACTGGAGAATATGTACGAGGCATAACACTTTATCTAAGTTATACTTGTCCGCTCGTTCGTTAGAGCCTTGCAAGCATGTGACGCAACGATTTACAGACTGGTGGGCCACAAGGCACGAGACCTATTTTGATGATAACATACATCATTTGATGAGTAGTGCCATTCATCTCCCTTTACAGCCCAAACTACCCAAGAACCGAGGGAGCAACCTGGGTGGTAATGAAATTCGCTTGGTTGAGGCGATGGCTGCTACTCTCGAGGAGGAGATAAATGAGCATAAAGATGAAAGCGATAGCAGAAAAAGTGATTGTCATTGGAAGAGACCTTTGAAGAAAGCGAATGTACCAGGTAATGATCCCAACGGAAGGGGTTCAAGTGCTTTGGGCGACCCAACGTTCCACCATTAG

mRNA sequence

ATGTCACCTACGATCACACTGGATAATATATTATATCACTGGAGAATATGTACGAGGCATAACACTTTATCTAAGTTATACTTGTCCGCTCGTTCGTTAGAGCCTTGCAAGCATGTGACGCAACGATTTACAGACTGGTGGGCCACAAGGCACGAGACCTATTTTGATGATAACATACATCATTTGATGAGTAGTGCCATTCATCTCCCTTTACAGCCCAAACTACCCAAGAACCGAGGGAGCAACCTGGGTGGTAATGAAATTCGCTTGGTTGAGGCGATGGCTGCTACTCTCGAGGAGGAGATAAATGAGCATAAAGATGAAAGCGATAGCAGAAAAAGTGATTGTCATTGGAAGAGACCTTTGAAGAAAGCGAATGTACCAGGTAATGATCCCAACGGAAGGGGTTCAAGTGCTTTGGGCGACCCAACGTTCCACCATTAG

Coding sequence (CDS)

ATGTCACCTACGATCACACTGGATAATATATTATATCACTGGAGAATATGTACGAGGCATAACACTTTATCTAAGTTATACTTGTCCGCTCGTTCGTTAGAGCCTTGCAAGCATGTGACGCAACGATTTACAGACTGGTGGGCCACAAGGCACGAGACCTATTTTGATGATAACATACATCATTTGATGAGTAGTGCCATTCATCTCCCTTTACAGCCCAAACTACCCAAGAACCGAGGGAGCAACCTGGGTGGTAATGAAATTCGCTTGGTTGAGGCGATGGCTGCTACTCTCGAGGAGGAGATAAATGAGCATAAAGATGAAAGCGATAGCAGAAAAAGTGATTGTCATTGGAAGAGACCTTTGAAGAAAGCGAATGTACCAGGTAATGATCCCAACGGAAGGGGTTCAAGTGCTTTGGGCGACCCAACGTTCCACCATTAG

Protein sequence

MSPTITLDNILYHWRICTRHNTLSKLYLSARSLEPCKHVTQRFTDWWATRHETYFDDNIHHLMSSAIHLPLQPKLPKNRGSNLGGNEIRLVEAMAATLEEEINEHKDESDSRKSDCHWKRPLKKANVPGNDPNGRGSSALGDPTFHH
Homology
BLAST of IVF0008990 vs. ExPASy TrEMBL
Match: A0A5D3D2A0 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003250 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 5.8e-61
Identity = 115/147 (78.23%), Postives = 126/147 (85.71%), Query Frame = 0

Query: 1   MSPTITLDNILYHWRICTRHNTLSKLYLSARSLEPCKHVTQRFTDWWATRHETYFDDNIH 60
           M P IT DN+L+HWRICTRHNTL++LYL ARSLEPCKHVTQRFTDWW+ RH TYF+DNIH
Sbjct: 458 MPPAITPDNMLHHWRICTRHNTLTELYLPARSLEPCKHVTQRFTDWWSMRHGTYFEDNIH 517

Query: 61  HLMSSAIHLPLQPKLPKNRGSNLGGNEIRLVEAMAATLEEEINEHKDESDSRKSDCHWKR 120
           HL+SS I  P QPKLPKNRG+NLGG EIRLVEAMAATLEEEINEHKDE+DS KSD HWKR
Sbjct: 518 HLVSSVIPPPSQPKLPKNRGTNLGGKEIRLVEAMAATLEEEINEHKDETDSSKSDRHWKR 577

Query: 121 PLKKANVPGNDPNGRGSSALGDPTFHH 148
           PLKKA V  +DP+ RGSSALG P   H
Sbjct: 578 PLKKAKVSSDDPDERGSSALGSPLNAH 604

BLAST of IVF0008990 vs. ExPASy TrEMBL
Match: A0A5A7SQC9 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold506G00140 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 4.6e-58
Identity = 111/143 (77.62%), Postives = 119/143 (83.22%), Query Frame = 0

Query: 1   MSPTITLDNILYHWRICTRHNTLSKLYLSARSLEPCKHVTQRFTDWWATRHETYFDDNIH 60
           M P ITLDNILYHWRICTR NTLS+LYL  RSLEPCKHVTQRFTDWW T+H TYF+DN H
Sbjct: 165 MPPAITLDNILYHWRICTRRNTLSELYLPTRSLEPCKHVTQRFTDWWTTKHGTYFEDNRH 224

Query: 61  HLMSSAIHLPLQPKLPKNRGSNLGGNEIRLVEAMAATLEEEINEHKDESDSRKSDCHWKR 120
           HL+SS I  P QP+LPKNRGSNLGG EIRLVEAMA  LEEE+ EHKDESDS KSD HWKR
Sbjct: 225 HLVSSVIPPPSQPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKR 284

Query: 121 PLKKANVPGNDPNGRGSSALGDP 144
           PLKKA V G+ P+GRG SAL  P
Sbjct: 285 PLKKAKVSGDHPDGRGLSALEVP 307

BLAST of IVF0008990 vs. ExPASy TrEMBL
Match: A0A5D3CXA5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003220 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 6.0e-58
Identity = 111/143 (77.62%), Postives = 121/143 (84.62%), Query Frame = 0

Query: 1   MSPTITLDNILYHWRICTRHNTLSKLYLSARSLEPCKHVTQRFTDWWATRHETYFDDNIH 60
           M P ITL+NILYHWRICTR NTLSKLYL+ARSLEPCKHVTQ+FT+WW TRH TYF+DN H
Sbjct: 66  MPPAITLNNILYHWRICTRRNTLSKLYLAARSLEPCKHVTQQFTNWWTTRHGTYFEDNRH 125

Query: 61  HLMSSAIHLPLQPKLPKNRGSNLGGNEIRLVEAMAATLEEEINEHKDESDSRKSDCHWKR 120
           HLMSSAI  P QPKLPKNRGSNLGG +IRLVE M   LEEE+ EHKDESDS KSD HWKR
Sbjct: 126 HLMSSAIPPPSQPKLPKNRGSNLGGKKIRLVEVMTPNLEEEVKEHKDESDSSKSDRHWKR 185

Query: 121 PLKKANVPGNDPNGRGSSALGDP 144
           PLKKA V  ++P+GRG SALG P
Sbjct: 186 PLKKAKVSCDNPDGRGLSALGVP 208

BLAST of IVF0008990 vs. ExPASy TrEMBL
Match: A0A5A7TX42 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00950 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 1.0e-57
Identity = 112/143 (78.32%), Postives = 120/143 (83.92%), Query Frame = 0

Query: 1   MSPTITLDNILYHWRICTRHNTLSKLYLSARSLEPCKHVTQRFTDWWATRHETYFDDNIH 60
           MSP ITLDNILYHWRICTR NTLS+LYL ARSLEPCKHVTQRFTDWW T+H TYF+DN H
Sbjct: 484 MSPAITLDNILYHWRICTRRNTLSELYLPARSLEPCKHVTQRFTDWWTTKHGTYFEDNRH 543

Query: 61  HLMSSAIHLPLQPKLPKNRGSNLGGNEIRLVEAMAATLEEEINEHKDESDSRKSDCHWKR 120
           HL+SSAI    QP+LPKNRGSNLGG EIRLVEAMA  LEEE+ E KDESDS KSD HWKR
Sbjct: 544 HLVSSAIPPSSQPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVKERKDESDSSKSDRHWKR 603

Query: 121 PLKKANVPGNDPNGRGSSALGDP 144
           PLKKA V G+ P+GRG SAL  P
Sbjct: 604 PLKKAKVSGDHPDGRGLSALEVP 626

BLAST of IVF0008990 vs. ExPASy TrEMBL
Match: A0A5A7SHN8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1204G00400 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.9e-57
Identity = 111/143 (77.62%), Postives = 118/143 (82.52%), Query Frame = 0

Query: 1   MSPTITLDNILYHWRICTRHNTLSKLYLSARSLEPCKHVTQRFTDWWATRHETYFDDNIH 60
           M P ITLDNILYHWRICTR NTLS+LYL ARSLEPCKHVTQRFTDWW T+H TYF+DN H
Sbjct: 484 MPPAITLDNILYHWRICTRRNTLSELYLPARSLEPCKHVTQRFTDWWTTKHGTYFEDNRH 543

Query: 61  HLMSSAIHLPLQPKLPKNRGSNLGGNEIRLVEAMAATLEEEINEHKDESDSRKSDCHWKR 120
           HL+SSAI  P Q +LPKNRG NLGG EIRLVEAMA  LEEE+ EHKDESDS KSD HWKR
Sbjct: 544 HLVSSAIPPPSQSRLPKNRGRNLGGKEIRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKR 603

Query: 121 PLKKANVPGNDPNGRGSSALGDP 144
           PLKKA V G+ PN RG SAL  P
Sbjct: 604 PLKKAEVSGDHPNERGLSALEVP 626

BLAST of IVF0008990 vs. NCBI nr
Match: TYK16513.1 (hypothetical protein E5676_scaffold21G003220 [Cucumis melo var. makuwa])

HSP 1 Score: 231 bits (590), Expect = 6.92e-73
Identity = 111/143 (77.62%), Postives = 121/143 (84.62%), Query Frame = 0

Query: 1   MSPTITLDNILYHWRICTRHNTLSKLYLSARSLEPCKHVTQRFTDWWATRHETYFDDNIH 60
           M P ITL+NILYHWRICTR NTLSKLYL+ARSLEPCKHVTQ+FT+WW TRH TYF+DN H
Sbjct: 66  MPPAITLNNILYHWRICTRRNTLSKLYLAARSLEPCKHVTQQFTNWWTTRHGTYFEDNRH 125

Query: 61  HLMSSAIHLPLQPKLPKNRGSNLGGNEIRLVEAMAATLEEEINEHKDESDSRKSDCHWKR 120
           HLMSSAI  P QPKLPKNRGSNLGG +IRLVE M   LEEE+ EHKDESDS KSD HWKR
Sbjct: 126 HLMSSAIPPPSQPKLPKNRGSNLGGKKIRLVEVMTPNLEEEVKEHKDESDSSKSDRHWKR 185

Query: 121 PLKKANVPGNDPNGRGSSALGDP 143
           PLKKA V  ++P+GRG SALG P
Sbjct: 186 PLKKAKVSCDNPDGRGLSALGVP 208

BLAST of IVF0008990 vs. NCBI nr
Match: KAA0042070.1 (hypothetical protein E6C27_scaffold67G005320 [Cucumis melo var. makuwa] >TYK18012.1 hypothetical protein E5676_scaffold306G003250 [Cucumis melo var. makuwa])

HSP 1 Score: 242 bits (617), Expect = 3.77e-72
Identity = 115/147 (78.23%), Postives = 126/147 (85.71%), Query Frame = 0

Query: 1   MSPTITLDNILYHWRICTRHNTLSKLYLSARSLEPCKHVTQRFTDWWATRHETYFDDNIH 60
           M P IT DN+L+HWRICTRHNTL++LYL ARSLEPCKHVTQRFTDWW+ RH TYF+DNIH
Sbjct: 458 MPPAITPDNMLHHWRICTRHNTLTELYLPARSLEPCKHVTQRFTDWWSMRHGTYFEDNIH 517

Query: 61  HLMSSAIHLPLQPKLPKNRGSNLGGNEIRLVEAMAATLEEEINEHKDESDSRKSDCHWKR 120
           HL+SS I  P QPKLPKNRG+NLGG EIRLVEAMAATLEEEINEHKDE+DS KSD HWKR
Sbjct: 518 HLVSSVIPPPSQPKLPKNRGTNLGGKEIRLVEAMAATLEEEINEHKDETDSSKSDRHWKR 577

Query: 121 PLKKANVPGNDPNGRGSSALGDPTFHH 147
           PLKKA V  +DP+ RGSSALG P   H
Sbjct: 578 PLKKAKVSSDDPDERGSSALGSPLNAH 604

BLAST of IVF0008990 vs. NCBI nr
Match: KAA0031751.1 (hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 232 bits (591), Expect = 6.53e-70
Identity = 111/143 (77.62%), Postives = 119/143 (83.22%), Query Frame = 0

Query: 1   MSPTITLDNILYHWRICTRHNTLSKLYLSARSLEPCKHVTQRFTDWWATRHETYFDDNIH 60
           M P ITLDNILYHWRICTR NTLS+LYL  RSLEPCKHVTQRFTDWW T+H TYF+DN H
Sbjct: 165 MPPAITLDNILYHWRICTRRNTLSELYLPTRSLEPCKHVTQRFTDWWTTKHGTYFEDNRH 224

Query: 61  HLMSSAIHLPLQPKLPKNRGSNLGGNEIRLVEAMAATLEEEINEHKDESDSRKSDCHWKR 120
           HL+SS I  P QP+LPKNRGSNLGG EIRLVEAMA  LEEE+ EHKDESDS KSD HWKR
Sbjct: 225 HLVSSVIPPPSQPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKR 284

Query: 121 PLKKANVPGNDPNGRGSSALGDP 143
           PLKKA V G+ P+GRG SAL  P
Sbjct: 285 PLKKAKVSGDHPDGRGLSALEVP 307

BLAST of IVF0008990 vs. NCBI nr
Match: KAA0057575.1 (hypothetical protein E6C27_scaffold497G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 224 bits (570), Expect = 3.57e-68
Identity = 109/143 (76.22%), Postives = 118/143 (82.52%), Query Frame = 0

Query: 1   MSPTITLDNILYHWRICTRHNTLSKLYLSARSLEPCKHVTQRFTDWWATRHETYFDDNIH 60
           M P ITLDNILYHWRIC R NTLS+LYL ARSLEPCKHVTQRFTDWW T+H TYF+DN H
Sbjct: 308 MPPAITLDNILYHWRICMRRNTLSELYLPARSLEPCKHVTQRFTDWWTTKHGTYFEDNRH 367

Query: 61  HLMSSAIHLPLQPKLPKNRGSNLGGNEIRLVEAMAATLEEEINEHKDESDSRKSDCHWKR 120
           HL+SSAI  P QP+LPKNRGSNLGG EIRLVEAMA  LE+E+NEH  ESDS KSD HWKR
Sbjct: 368 HLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMAPNLEDEVNEH--ESDSNKSDRHWKR 427

Query: 121 PLKKANVPGNDPNGRGSSALGDP 143
           PLKK  V G+ P+GRG SAL  P
Sbjct: 428 PLKKTKVSGDHPDGRGLSALEVP 448

BLAST of IVF0008990 vs. NCBI nr
Match: KAA0047478.1 (hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 231 bits (588), Expect = 9.64e-68
Identity = 112/143 (78.32%), Postives = 120/143 (83.92%), Query Frame = 0

Query: 1   MSPTITLDNILYHWRICTRHNTLSKLYLSARSLEPCKHVTQRFTDWWATRHETYFDDNIH 60
           MSP ITLDNILYHWRICTR NTLS+LYL ARSLEPCKHVTQRFTDWW T+H TYF+DN H
Sbjct: 484 MSPAITLDNILYHWRICTRRNTLSELYLPARSLEPCKHVTQRFTDWWTTKHGTYFEDNRH 543

Query: 61  HLMSSAIHLPLQPKLPKNRGSNLGGNEIRLVEAMAATLEEEINEHKDESDSRKSDCHWKR 120
           HL+SSAI    QP+LPKNRGSNLGG EIRLVEAMA  LEEE+ E KDESDS KSD HWKR
Sbjct: 544 HLVSSAIPPSSQPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVKERKDESDSSKSDRHWKR 603

Query: 121 PLKKANVPGNDPNGRGSSALGDP 143
           PLKKA V G+ P+GRG SAL  P
Sbjct: 604 PLKKAKVSGDHPDGRGLSALEVP 626

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3D2A05.8e-6178.23PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A5A7SQC94.6e-5877.62PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
A0A5D3CXA56.0e-5877.62Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TX421.0e-5778.32Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SHN83.9e-5777.62PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
Match NameE-valueIdentityDescription
TYK16513.16.92e-7377.62hypothetical protein E5676_scaffold21G003220 [Cucumis melo var. makuwa][more]
KAA0042070.13.77e-7278.23hypothetical protein E6C27_scaffold67G005320 [Cucumis melo var. makuwa] >TYK1801... [more]
KAA0031751.16.53e-7077.62hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa][more]
KAA0057575.13.57e-6876.22hypothetical protein E6C27_scaffold497G00470 [Cucumis melo var. makuwa][more]
KAA0047478.19.64e-6878.32hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 88..115
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..124
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..147

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0008990.1IVF0008990.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane