Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACCACAAAGAAGGCCGAGAAAAGGTCAACAAGTTGCAACTAATATTCTAGCTACTAGGAGCGCTAATAGGGCGCAAGCATATGACAAAATGTCTACTAATCCACATAAAATCGATGTACAAATGGCGGAGGAAAGCATGTTCGACCGCTTTGCTCAAAGACTAGCTGATCATTTCATGCCTACACCATCCACTATGGTTAAGAGATTTGGCATCGGGAGATTGAAGGCATTGGGAGAAACGACTTTCAAGGGACCACTAATCAAAATCATGCGGAGAAGTGGTTGA
mRNA sequence
ATGGCACCACAAAGAAGGCCGAGAAAAGGTCAACAAGTTGCAACTAATATTCTAGCTACTAGGAGCGCTAATAGGGCGCAAGCATATGACAAAATGTCTACTAATCCACATAAAATCGATGTACAAATGGCGGAGGAAAGCATGTTCGACCGCTTTGCTCAAAGACTAGCTGATCATTTCATGCCTACACCATCCACTATGGTTAAGAGATTTGGCATCGGGAGATTGAAGGCATTGGGAGAAACGACTTTCAAGGGACCACTAATCAAAATCATGCGGAGAAGTGGTTGA
Coding sequence (CDS)
ATGGCACCACAAAGAAGGCCGAGAAAAGGTCAACAAGTTGCAACTAATATTCTAGCTACTAGGAGCGCTAATAGGGCGCAAGCATATGACAAAATGTCTACTAATCCACATAAAATCGATGTACAAATGGCGGAGGAAAGCATGTTCGACCGCTTTGCTCAAAGACTAGCTGATCATTTCATGCCTACACCATCCACTATGGTTAAGAGATTTGGCATCGGGAGATTGAAGGCATTGGGAGAAACGACTTTCAAGGGACCACTAATCAAAATCATGCGGAGAAGTGGTTGA
Protein sequence
MAPQRRPRKGQQVATNILATRSANRAQAYDKMSTNPHKIDVQMAEESMFDRFAQRLADHFMPTPSTMVKRFGIGRLKALGETTFKGPLIKIMRRSG
Homology
BLAST of IVF0008596 vs. ExPASy TrEMBL
Match:
A0A5A7TVM1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00730 PE=4 SV=1)
HSP 1 Score: 104.8 bits (260), Expect = 2.1e-19
Identity = 54/82 (65.85%), Postives = 63/82 (76.83%), Query Frame = 0
Query: 5 RRPRKGQQVATNILATRSANRAQAYDKMSTNPHKIDVQMAEESMFDRFAQRLADHFMPTP 64
R+ R+G+QVA ++ TR ANRAQA K+S+NPH Q EESMFDRFAQRL DHFMP P
Sbjct: 25 RKVRRGRQVAISVPVTRKANRAQASGKISSNPHDSVRQNVEESMFDRFAQRLTDHFMPIP 84
Query: 65 STMVKRFGIGRLKALGETTFKG 87
ST+ KRFGI RLKALG TF+G
Sbjct: 85 STVDKRFGIERLKALGAMTFEG 106
BLAST of IVF0008596 vs. ExPASy TrEMBL
Match:
A0A5A7UG91 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00210 PE=4 SV=1)
HSP 1 Score: 99.8 bits (247), Expect = 6.8e-18
Identity = 51/86 (59.30%), Postives = 60/86 (69.77%), Query Frame = 0
Query: 1 MAPQRRPRKGQQVATNILATRSANRAQAYDKMSTNPHKIDVQMAEESMFDRFAQRLADHF 60
MAPQ R R+G QV T + TR+ +R Q D+MS N H + Q ESMFDRF ++L DHF
Sbjct: 1 MAPQERSRRGSQVITGVQGTRTVDRVQESDEMSCNAHNLVGQNVLESMFDRFTKKLNDHF 60
Query: 61 MPTPSTMVKRFGIGRLKALGETTFKG 87
MPTPSTM KRFGI RLKAL TF+G
Sbjct: 61 MPTPSTMYKRFGIKRLKALRAMTFEG 86
BLAST of IVF0008596 vs. ExPASy TrEMBL
Match:
A0A5D3BCS9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold469G00160 PE=4 SV=1)
HSP 1 Score: 98.6 bits (244), Expect = 1.5e-17
Identity = 50/86 (58.14%), Postives = 60/86 (69.77%), Query Frame = 0
Query: 1 MAPQRRPRKGQQVATNILATRSANRAQAYDKMSTNPHKIDVQMAEESMFDRFAQRLADHF 60
MAPQ R R+G QV T + TR+ +R Q D+MS N H + Q ESMFDRF ++L DHF
Sbjct: 152 MAPQERSRRGSQVITGVQGTRTVDRVQESDEMSCNAHNLVGQNVLESMFDRFTKKLNDHF 211
Query: 61 MPTPSTMVKRFGIGRLKALGETTFKG 87
MPTP+TM KRFGI RLKAL TF+G
Sbjct: 212 MPTPTTMCKRFGIERLKALRAMTFEG 237
BLAST of IVF0008596 vs. ExPASy TrEMBL
Match:
A0A5D3DVY7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold93G00280 PE=4 SV=1)
HSP 1 Score: 89.0 bits (219), Expect = 1.2e-14
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = 0
Query: 12 QVATNILATRSANRAQAYDKMSTNPHKIDVQMAEESMFDRFAQRLADHFMPTPSTMVKRF 71
QVA N+ + SANRAQ D+MS+NPH VQ EESMF+RFA+R+ADH +P S + KR
Sbjct: 2 QVAMNVQSIGSANRAQGLDEMSSNPHSTIVQNVEESMFNRFAERVADHLIPIKSNVEKRL 61
Query: 72 GIGRLKALGETTFKGPL 89
I R+KALG TTF+G +
Sbjct: 62 TIERIKALGATTFEGTI 78
BLAST of IVF0008596 vs. ExPASy TrEMBL
Match:
A0A5A7UFQ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1371G00020 PE=4 SV=1)
HSP 1 Score: 88.2 bits (217), Expect = 2.0e-14
Identity = 44/77 (57.14%), Postives = 55/77 (71.43%), Query Frame = 0
Query: 12 QVATNILATRSANRAQAYDKMSTNPHKIDVQMAEESMFDRFAQRLADHFMPTPSTMVKRF 71
QVA N+ + SANRAQ D+MS+NPH VQ EESMF+RFAQR+ADH +P S + KR
Sbjct: 2 QVAMNVQSIGSANRAQGLDEMSSNPHSTIVQNVEESMFNRFAQRVADHLIPIKSNVEKRL 61
Query: 72 GIGRLKALGETTFKGPL 89
I R+KALG T F+G +
Sbjct: 62 TIERIKALGATAFEGTI 78
BLAST of IVF0008596 vs. NCBI nr
Match:
KAA0047014.1 (hypothetical protein E6C27_scaffold230G002160 [Cucumis melo var. makuwa] >TYK04769.1 hypothetical protein E5676_scaffold68G00730 [Cucumis melo var. makuwa])
HSP 1 Score: 105 bits (262), Expect = 1.08e-26
Identity = 54/82 (65.85%), Postives = 63/82 (76.83%), Query Frame = 0
Query: 5 RRPRKGQQVATNILATRSANRAQAYDKMSTNPHKIDVQMAEESMFDRFAQRLADHFMPTP 64
R+ R+G+QVA ++ TR ANRAQA K+S+NPH Q EESMFDRFAQRL DHFMP P
Sbjct: 25 RKVRRGRQVAISVPVTRKANRAQASGKISSNPHDSVRQNVEESMFDRFAQRLTDHFMPIP 84
Query: 65 STMVKRFGIGRLKALGETTFKG 86
ST+ KRFGI RLKALG TF+G
Sbjct: 85 STVDKRFGIERLKALGAMTFEG 106
BLAST of IVF0008596 vs. NCBI nr
Match:
KAA0053236.1 (uncharacterized protein E6C27_scaffold102G00210 [Cucumis melo var. makuwa])
HSP 1 Score: 100 bits (249), Expect = 5.45e-25
Identity = 51/86 (59.30%), Postives = 60/86 (69.77%), Query Frame = 0
Query: 1 MAPQRRPRKGQQVATNILATRSANRAQAYDKMSTNPHKIDVQMAEESMFDRFAQRLADHF 60
MAPQ R R+G QV T + TR+ +R Q D+MS N H + Q ESMFDRF ++L DHF
Sbjct: 1 MAPQERSRRGSQVITGVQGTRTVDRVQESDEMSCNAHNLVGQNVLESMFDRFTKKLNDHF 60
Query: 61 MPTPSTMVKRFGIGRLKALGETTFKG 86
MPTPSTM KRFGI RLKAL TF+G
Sbjct: 61 MPTPSTMYKRFGIKRLKALRAMTFEG 86
BLAST of IVF0008596 vs. NCBI nr
Match:
TYJ97632.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 99.4 bits (246), Expect = 5.96e-23
Identity = 50/86 (58.14%), Postives = 60/86 (69.77%), Query Frame = 0
Query: 1 MAPQRRPRKGQQVATNILATRSANRAQAYDKMSTNPHKIDVQMAEESMFDRFAQRLADHF 60
MAPQ R R+G QV T + TR+ +R Q D+MS N H + Q ESMFDRF ++L DHF
Sbjct: 152 MAPQERSRRGSQVITGVQGTRTVDRVQESDEMSCNAHNLVGQNVLESMFDRFTKKLNDHF 211
Query: 61 MPTPSTMVKRFGIGRLKALGETTFKG 86
MPTP+TM KRFGI RLKAL TF+G
Sbjct: 212 MPTPTTMCKRFGIERLKALRAMTFEG 237
BLAST of IVF0008596 vs. NCBI nr
Match:
TYK27664.1 (uncharacterized protein E5676_scaffold93G00280 [Cucumis melo var. makuwa])
HSP 1 Score: 89.7 bits (221), Expect = 1.45e-20
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = 0
Query: 12 QVATNILATRSANRAQAYDKMSTNPHKIDVQMAEESMFDRFAQRLADHFMPTPSTMVKRF 71
QVA N+ + SANRAQ D+MS+NPH VQ EESMF+RFA+R+ADH +P S + KR
Sbjct: 2 QVAMNVQSIGSANRAQGLDEMSSNPHSTIVQNVEESMFNRFAERVADHLIPIKSNVEKRL 61
Query: 72 GIGRLKALGETTFKGPL 88
I R+KALG TTF+G +
Sbjct: 62 TIERIKALGATTFEGTI 78
BLAST of IVF0008596 vs. NCBI nr
Match:
KAA0054080.1 (hypothetical protein E6C27_scaffold1371G00020 [Cucumis melo var. makuwa])
HSP 1 Score: 89.0 bits (219), Expect = 2.92e-20
Identity = 44/77 (57.14%), Postives = 55/77 (71.43%), Query Frame = 0
Query: 12 QVATNILATRSANRAQAYDKMSTNPHKIDVQMAEESMFDRFAQRLADHFMPTPSTMVKRF 71
QVA N+ + SANRAQ D+MS+NPH VQ EESMF+RFAQR+ADH +P S + KR
Sbjct: 2 QVAMNVQSIGSANRAQGLDEMSSNPHSTIVQNVEESMFNRFAQRVADHLIPIKSNVEKRL 61
Query: 72 GIGRLKALGETTFKGPL 88
I R+KALG T F+G +
Sbjct: 62 TIERIKALGATAFEGTI 78
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7TVM1 | 2.1e-19 | 65.85 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7UG91 | 6.8e-18 | 59.30 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3BCS9 | 1.5e-17 | 58.14 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold469G0016... | [more] |
A0A5D3DVY7 | 1.2e-14 | 57.14 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7UFQ1 | 2.0e-14 | 57.14 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
KAA0047014.1 | 1.08e-26 | 65.85 | hypothetical protein E6C27_scaffold230G002160 [Cucumis melo var. makuwa] >TYK047... | [more] |
KAA0053236.1 | 5.45e-25 | 59.30 | uncharacterized protein E6C27_scaffold102G00210 [Cucumis melo var. makuwa] | [more] |
TYJ97632.1 | 5.96e-23 | 58.14 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
TYK27664.1 | 1.45e-20 | 57.14 | uncharacterized protein E5676_scaffold93G00280 [Cucumis melo var. makuwa] | [more] |
KAA0054080.1 | 2.92e-20 | 57.14 | hypothetical protein E6C27_scaffold1371G00020 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |