IVF0008596 (gene) Melon (IVF77) v1

Overview
NameIVF0008596
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Locationchr01: 13470905 .. 13471195 (+)
RNA-Seq ExpressionIVF0008596
SyntenyIVF0008596
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACCACAAAGAAGGCCGAGAAAAGGTCAACAAGTTGCAACTAATATTCTAGCTACTAGGAGCGCTAATAGGGCGCAAGCATATGACAAAATGTCTACTAATCCACATAAAATCGATGTACAAATGGCGGAGGAAAGCATGTTCGACCGCTTTGCTCAAAGACTAGCTGATCATTTCATGCCTACACCATCCACTATGGTTAAGAGATTTGGCATCGGGAGATTGAAGGCATTGGGAGAAACGACTTTCAAGGGACCACTAATCAAAATCATGCGGAGAAGTGGTTGA

mRNA sequence

ATGGCACCACAAAGAAGGCCGAGAAAAGGTCAACAAGTTGCAACTAATATTCTAGCTACTAGGAGCGCTAATAGGGCGCAAGCATATGACAAAATGTCTACTAATCCACATAAAATCGATGTACAAATGGCGGAGGAAAGCATGTTCGACCGCTTTGCTCAAAGACTAGCTGATCATTTCATGCCTACACCATCCACTATGGTTAAGAGATTTGGCATCGGGAGATTGAAGGCATTGGGAGAAACGACTTTCAAGGGACCACTAATCAAAATCATGCGGAGAAGTGGTTGA

Coding sequence (CDS)

ATGGCACCACAAAGAAGGCCGAGAAAAGGTCAACAAGTTGCAACTAATATTCTAGCTACTAGGAGCGCTAATAGGGCGCAAGCATATGACAAAATGTCTACTAATCCACATAAAATCGATGTACAAATGGCGGAGGAAAGCATGTTCGACCGCTTTGCTCAAAGACTAGCTGATCATTTCATGCCTACACCATCCACTATGGTTAAGAGATTTGGCATCGGGAGATTGAAGGCATTGGGAGAAACGACTTTCAAGGGACCACTAATCAAAATCATGCGGAGAAGTGGTTGA

Protein sequence

MAPQRRPRKGQQVATNILATRSANRAQAYDKMSTNPHKIDVQMAEESMFDRFAQRLADHFMPTPSTMVKRFGIGRLKALGETTFKGPLIKIMRRSG
Homology
BLAST of IVF0008596 vs. ExPASy TrEMBL
Match: A0A5A7TVM1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00730 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.1e-19
Identity = 54/82 (65.85%), Postives = 63/82 (76.83%), Query Frame = 0

Query: 5   RRPRKGQQVATNILATRSANRAQAYDKMSTNPHKIDVQMAEESMFDRFAQRLADHFMPTP 64
           R+ R+G+QVA ++  TR ANRAQA  K+S+NPH    Q  EESMFDRFAQRL DHFMP P
Sbjct: 25  RKVRRGRQVAISVPVTRKANRAQASGKISSNPHDSVRQNVEESMFDRFAQRLTDHFMPIP 84

Query: 65  STMVKRFGIGRLKALGETTFKG 87
           ST+ KRFGI RLKALG  TF+G
Sbjct: 85  STVDKRFGIERLKALGAMTFEG 106

BLAST of IVF0008596 vs. ExPASy TrEMBL
Match: A0A5A7UG91 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00210 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 6.8e-18
Identity = 51/86 (59.30%), Postives = 60/86 (69.77%), Query Frame = 0

Query: 1  MAPQRRPRKGQQVATNILATRSANRAQAYDKMSTNPHKIDVQMAEESMFDRFAQRLADHF 60
          MAPQ R R+G QV T +  TR+ +R Q  D+MS N H +  Q   ESMFDRF ++L DHF
Sbjct: 1  MAPQERSRRGSQVITGVQGTRTVDRVQESDEMSCNAHNLVGQNVLESMFDRFTKKLNDHF 60

Query: 61 MPTPSTMVKRFGIGRLKALGETTFKG 87
          MPTPSTM KRFGI RLKAL   TF+G
Sbjct: 61 MPTPSTMYKRFGIKRLKALRAMTFEG 86

BLAST of IVF0008596 vs. ExPASy TrEMBL
Match: A0A5D3BCS9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold469G00160 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.5e-17
Identity = 50/86 (58.14%), Postives = 60/86 (69.77%), Query Frame = 0

Query: 1   MAPQRRPRKGQQVATNILATRSANRAQAYDKMSTNPHKIDVQMAEESMFDRFAQRLADHF 60
           MAPQ R R+G QV T +  TR+ +R Q  D+MS N H +  Q   ESMFDRF ++L DHF
Sbjct: 152 MAPQERSRRGSQVITGVQGTRTVDRVQESDEMSCNAHNLVGQNVLESMFDRFTKKLNDHF 211

Query: 61  MPTPSTMVKRFGIGRLKALGETTFKG 87
           MPTP+TM KRFGI RLKAL   TF+G
Sbjct: 212 MPTPTTMCKRFGIERLKALRAMTFEG 237

BLAST of IVF0008596 vs. ExPASy TrEMBL
Match: A0A5D3DVY7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold93G00280 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.2e-14
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = 0

Query: 12 QVATNILATRSANRAQAYDKMSTNPHKIDVQMAEESMFDRFAQRLADHFMPTPSTMVKRF 71
          QVA N+ +  SANRAQ  D+MS+NPH   VQ  EESMF+RFA+R+ADH +P  S + KR 
Sbjct: 2  QVAMNVQSIGSANRAQGLDEMSSNPHSTIVQNVEESMFNRFAERVADHLIPIKSNVEKRL 61

Query: 72 GIGRLKALGETTFKGPL 89
           I R+KALG TTF+G +
Sbjct: 62 TIERIKALGATTFEGTI 78

BLAST of IVF0008596 vs. ExPASy TrEMBL
Match: A0A5A7UFQ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1371G00020 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.0e-14
Identity = 44/77 (57.14%), Postives = 55/77 (71.43%), Query Frame = 0

Query: 12 QVATNILATRSANRAQAYDKMSTNPHKIDVQMAEESMFDRFAQRLADHFMPTPSTMVKRF 71
          QVA N+ +  SANRAQ  D+MS+NPH   VQ  EESMF+RFAQR+ADH +P  S + KR 
Sbjct: 2  QVAMNVQSIGSANRAQGLDEMSSNPHSTIVQNVEESMFNRFAQRVADHLIPIKSNVEKRL 61

Query: 72 GIGRLKALGETTFKGPL 89
           I R+KALG T F+G +
Sbjct: 62 TIERIKALGATAFEGTI 78

BLAST of IVF0008596 vs. NCBI nr
Match: KAA0047014.1 (hypothetical protein E6C27_scaffold230G002160 [Cucumis melo var. makuwa] >TYK04769.1 hypothetical protein E5676_scaffold68G00730 [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (262), Expect = 1.08e-26
Identity = 54/82 (65.85%), Postives = 63/82 (76.83%), Query Frame = 0

Query: 5   RRPRKGQQVATNILATRSANRAQAYDKMSTNPHKIDVQMAEESMFDRFAQRLADHFMPTP 64
           R+ R+G+QVA ++  TR ANRAQA  K+S+NPH    Q  EESMFDRFAQRL DHFMP P
Sbjct: 25  RKVRRGRQVAISVPVTRKANRAQASGKISSNPHDSVRQNVEESMFDRFAQRLTDHFMPIP 84

Query: 65  STMVKRFGIGRLKALGETTFKG 86
           ST+ KRFGI RLKALG  TF+G
Sbjct: 85  STVDKRFGIERLKALGAMTFEG 106

BLAST of IVF0008596 vs. NCBI nr
Match: KAA0053236.1 (uncharacterized protein E6C27_scaffold102G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (249), Expect = 5.45e-25
Identity = 51/86 (59.30%), Postives = 60/86 (69.77%), Query Frame = 0

Query: 1  MAPQRRPRKGQQVATNILATRSANRAQAYDKMSTNPHKIDVQMAEESMFDRFAQRLADHF 60
          MAPQ R R+G QV T +  TR+ +R Q  D+MS N H +  Q   ESMFDRF ++L DHF
Sbjct: 1  MAPQERSRRGSQVITGVQGTRTVDRVQESDEMSCNAHNLVGQNVLESMFDRFTKKLNDHF 60

Query: 61 MPTPSTMVKRFGIGRLKALGETTFKG 86
          MPTPSTM KRFGI RLKAL   TF+G
Sbjct: 61 MPTPSTMYKRFGIKRLKALRAMTFEG 86

BLAST of IVF0008596 vs. NCBI nr
Match: TYJ97632.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 5.96e-23
Identity = 50/86 (58.14%), Postives = 60/86 (69.77%), Query Frame = 0

Query: 1   MAPQRRPRKGQQVATNILATRSANRAQAYDKMSTNPHKIDVQMAEESMFDRFAQRLADHF 60
           MAPQ R R+G QV T +  TR+ +R Q  D+MS N H +  Q   ESMFDRF ++L DHF
Sbjct: 152 MAPQERSRRGSQVITGVQGTRTVDRVQESDEMSCNAHNLVGQNVLESMFDRFTKKLNDHF 211

Query: 61  MPTPSTMVKRFGIGRLKALGETTFKG 86
           MPTP+TM KRFGI RLKAL   TF+G
Sbjct: 212 MPTPTTMCKRFGIERLKALRAMTFEG 237

BLAST of IVF0008596 vs. NCBI nr
Match: TYK27664.1 (uncharacterized protein E5676_scaffold93G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 1.45e-20
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = 0

Query: 12 QVATNILATRSANRAQAYDKMSTNPHKIDVQMAEESMFDRFAQRLADHFMPTPSTMVKRF 71
          QVA N+ +  SANRAQ  D+MS+NPH   VQ  EESMF+RFA+R+ADH +P  S + KR 
Sbjct: 2  QVAMNVQSIGSANRAQGLDEMSSNPHSTIVQNVEESMFNRFAERVADHLIPIKSNVEKRL 61

Query: 72 GIGRLKALGETTFKGPL 88
           I R+KALG TTF+G +
Sbjct: 62 TIERIKALGATTFEGTI 78

BLAST of IVF0008596 vs. NCBI nr
Match: KAA0054080.1 (hypothetical protein E6C27_scaffold1371G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 2.92e-20
Identity = 44/77 (57.14%), Postives = 55/77 (71.43%), Query Frame = 0

Query: 12 QVATNILATRSANRAQAYDKMSTNPHKIDVQMAEESMFDRFAQRLADHFMPTPSTMVKRF 71
          QVA N+ +  SANRAQ  D+MS+NPH   VQ  EESMF+RFAQR+ADH +P  S + KR 
Sbjct: 2  QVAMNVQSIGSANRAQGLDEMSSNPHSTIVQNVEESMFNRFAQRVADHLIPIKSNVEKRL 61

Query: 72 GIGRLKALGETTFKGPL 88
           I R+KALG T F+G +
Sbjct: 62 TIERIKALGATAFEGTI 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TVM12.1e-1965.85Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UG916.8e-1859.30Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BCS91.5e-1758.14Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold469G0016... [more]
A0A5D3DVY71.2e-1457.14Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UFQ12.0e-1457.14Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0047014.11.08e-2665.85hypothetical protein E6C27_scaffold230G002160 [Cucumis melo var. makuwa] >TYK047... [more]
KAA0053236.15.45e-2559.30uncharacterized protein E6C27_scaffold102G00210 [Cucumis melo var. makuwa][more]
TYJ97632.15.96e-2358.14gag/pol protein [Cucumis melo var. makuwa][more]
TYK27664.11.45e-2057.14uncharacterized protein E5676_scaffold93G00280 [Cucumis melo var. makuwa][more]
KAA0054080.12.92e-2057.14hypothetical protein E6C27_scaffold1371G00020 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0008596.1IVF0008596.1mRNA