IVF0008445 (gene) Melon (IVF77) v1

Overview
NameIVF0008445
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Locationchr02: 4565555 .. 4565794 (+)
RNA-Seq ExpressionIVF0008445
SyntenyIVF0008445
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTTCCAACTACTAGGAGTGCTAATAGAGTGCAAGGATCAAATGAGATGTCTTGTAACCCACATAACACTACCGAGCAAAATGTAGAGGAAAGCATGTTTAATTACTTCGGTCAGAGAGTAGTTGATCATCGTATGCCCATAAACTCTAATGTGGTCAAGAGGTTTGACATTGAGAGGTTAAAGGCATTGAGAGCAATCATTGAGATAGATGGCCAATCTAAAAGAAATATTTAA

mRNA sequence

ATGGATGTTCCAACTACTAGGAGTGCTAATAGAGTGCAAGGATCAAATGAGATGTCTTGTAACCCACATAACACTACCGAGCAAAATGTAGAGGAAAGCATGTTTAATTACTTCGGTCAGAGAGTAGTTGATCATCGTATGCCCATAAACTCTAATGTGGTCAAGAGGTTTGACATTGAGAGGTTAAAGGCATTGAGAGCAATCATTGAGATAGATGGCCAATCTAAAAGAAATATTTAA

Coding sequence (CDS)

ATGGATGTTCCAACTACTAGGAGTGCTAATAGAGTGCAAGGATCAAATGAGATGTCTTGTAACCCACATAACACTACCGAGCAAAATGTAGAGGAAAGCATGTTTAATTACTTCGGTCAGAGAGTAGTTGATCATCGTATGCCCATAAACTCTAATGTGGTCAAGAGGTTTGACATTGAGAGGTTAAAGGCATTGAGAGCAATCATTGAGATAGATGGCCAATCTAAAAGAAATATTTAA

Protein sequence

MDVPTTRSANRVQGSNEMSCNPHNTTEQNVEESMFNYFGQRVVDHRMPINSNVVKRFDIERLKALRAIIEIDGQSKRNI
Homology
BLAST of IVF0008445 vs. ExPASy TrEMBL
Match: A0A5D3DWI1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold93G00290 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.9e-26
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0

Query: 1  MDVPTTRSANRVQGSNEMSCNPHNTTEQNVEESMFNYFGQRVVDHRMPINSNVVKRFDIE 60
          MDVPTTRSANRVQGSNEMSCNPHNTTEQNVEESMFNYFGQRVVDHRMPINSNVVKRFDIE
Sbjct: 5  MDVPTTRSANRVQGSNEMSCNPHNTTEQNVEESMFNYFGQRVVDHRMPINSNVVKRFDIE 64

Query: 61 RLKA 65
          R K+
Sbjct: 65 RQKS 68

BLAST of IVF0008445 vs. ExPASy TrEMBL
Match: A0A5A7TFU7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold824G001010 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.0e-19
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0

Query: 1   MDVPTTRSANRVQGSNEMSCNPHNTTEQNVEESMFNYFGQRVVDHRMPINSNV 54
           MDVPTTRSANRVQGSNEMS NPHNTTE+NVEESMFN+FGQRVVDHRMPINSNV
Sbjct: 50  MDVPTTRSANRVQGSNEMSRNPHNTTEKNVEESMFNHFGQRVVDHRMPINSNV 102

BLAST of IVF0008445 vs. ExPASy TrEMBL
Match: A0A5A7UFQ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1371G00020 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.1e-13
Identity = 44/67 (65.67%), Postives = 50/67 (74.63%), Query Frame = 0

Query: 1  MDVPTTRSANRVQGSNEMSCNPHNTTEQNVEESMFNYFGQRVVDHRMPINSNVVKRFDIE 60
          M+V +  SANR QG +EMS NPH+T  QNVEESMFN F QRV DH +PI SNV KR  IE
Sbjct: 5  MNVQSIGSANRAQGLDEMSSNPHSTIVQNVEESMFNRFAQRVADHLIPIKSNVEKRLTIE 64

Query: 61 RLKALRA 68
          R+KAL A
Sbjct: 65 RIKALGA 71

BLAST of IVF0008445 vs. ExPASy TrEMBL
Match: A0A5D3DVY7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold93G00280 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 9.2e-13
Identity = 43/67 (64.18%), Postives = 50/67 (74.63%), Query Frame = 0

Query: 1  MDVPTTRSANRVQGSNEMSCNPHNTTEQNVEESMFNYFGQRVVDHRMPINSNVVKRFDIE 60
          M+V +  SANR QG +EMS NPH+T  QNVEESMFN F +RV DH +PI SNV KR  IE
Sbjct: 5  MNVQSIGSANRAQGLDEMSSNPHSTIVQNVEESMFNRFAERVADHLIPIKSNVEKRLTIE 64

Query: 61 RLKALRA 68
          R+KAL A
Sbjct: 65 RIKALGA 71

BLAST of IVF0008445 vs. ExPASy TrEMBL
Match: A0A5A7TVM1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00730 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.2e-12
Identity = 42/68 (61.76%), Postives = 50/68 (73.53%), Query Frame = 0

Query: 1   MDVPTTRSANRVQGSNEMSCNPHNTTEQNVEESMFNYFGQRVVDHRMPINSNVVKRFDIE 60
           + VP TR ANR Q S ++S NPH++  QNVEESMF+ F QR+ DH MPI S V KRF IE
Sbjct: 35  ISVPVTRKANRAQASGKISSNPHDSVRQNVEESMFDRFAQRLTDHFMPIPSTVDKRFGIE 94

Query: 61  RLKALRAI 69
           RLKAL A+
Sbjct: 95  RLKALGAM 102

BLAST of IVF0008445 vs. NCBI nr
Match: TYK27665.1 (uncharacterized protein E5676_scaffold93G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 129 bits (324), Expect = 1.67e-35
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0

Query: 1  MDVPTTRSANRVQGSNEMSCNPHNTTEQNVEESMFNYFGQRVVDHRMPINSNVVKRFDIE 60
          MDVPTTRSANRVQGSNEMSCNPHNTTEQNVEESMFNYFGQRVVDHRMPINSNVVKRFDIE
Sbjct: 5  MDVPTTRSANRVQGSNEMSCNPHNTTEQNVEESMFNYFGQRVVDHRMPINSNVVKRFDIE 64

Query: 61 RLKA 64
          R K+
Sbjct: 65 RQKS 68

BLAST of IVF0008445 vs. NCBI nr
Match: KAA0042304.1 (uncharacterized protein E6C27_scaffold824G001010 [Cucumis melo var. makuwa])

HSP 1 Score: 104 bits (259), Expect = 1.07e-25
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0

Query: 1   MDVPTTRSANRVQGSNEMSCNPHNTTEQNVEESMFNYFGQRVVDHRMPINSNV 53
           MDVPTTRSANRVQGSNEMS NPHNTTE+NVEESMFN+FGQRVVDHRMPINSNV
Sbjct: 50  MDVPTTRSANRVQGSNEMSRNPHNTTEKNVEESMFNHFGQRVVDHRMPINSNV 102

BLAST of IVF0008445 vs. NCBI nr
Match: KAA0054080.1 (hypothetical protein E6C27_scaffold1371G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 4.93e-19
Identity = 44/67 (65.67%), Postives = 50/67 (74.63%), Query Frame = 0

Query: 1  MDVPTTRSANRVQGSNEMSCNPHNTTEQNVEESMFNYFGQRVVDHRMPINSNVVKRFDIE 60
          M+V +  SANR QG +EMS NPH+T  QNVEESMFN F QRV DH +PI SNV KR  IE
Sbjct: 5  MNVQSIGSANRAQGLDEMSSNPHSTIVQNVEESMFNRFAQRVADHLIPIKSNVEKRLTIE 64

Query: 61 RLKALRA 67
          R+KAL A
Sbjct: 65 RIKALGA 71

BLAST of IVF0008445 vs. NCBI nr
Match: TYK27664.1 (uncharacterized protein E5676_scaffold93G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 1.40e-18
Identity = 43/67 (64.18%), Postives = 50/67 (74.63%), Query Frame = 0

Query: 1  MDVPTTRSANRVQGSNEMSCNPHNTTEQNVEESMFNYFGQRVVDHRMPINSNVVKRFDIE 60
          M+V +  SANR QG +EMS NPH+T  QNVEESMFN F +RV DH +PI SNV KR  IE
Sbjct: 5  MNVQSIGSANRAQGLDEMSSNPHSTIVQNVEESMFNRFAERVADHLIPIKSNVEKRLTIE 64

Query: 61 RLKALRA 67
          R+KAL A
Sbjct: 65 RIKALGA 71

BLAST of IVF0008445 vs. NCBI nr
Match: KAA0047014.1 (hypothetical protein E6C27_scaffold230G002160 [Cucumis melo var. makuwa] >TYK04769.1 hypothetical protein E5676_scaffold68G00730 [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 2.38e-18
Identity = 42/68 (61.76%), Postives = 50/68 (73.53%), Query Frame = 0

Query: 1   MDVPTTRSANRVQGSNEMSCNPHNTTEQNVEESMFNYFGQRVVDHRMPINSNVVKRFDIE 60
           + VP TR ANR Q S ++S NPH++  QNVEESMF+ F QR+ DH MPI S V KRF IE
Sbjct: 35  ISVPVTRKANRAQASGKISSNPHDSVRQNVEESMFDRFAQRLTDHFMPIPSTVDKRFGIE 94

Query: 61  RLKALRAI 68
           RLKAL A+
Sbjct: 95  RLKALGAM 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DWI11.9e-2696.88Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TFU75.0e-1994.34Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UFQ14.1e-1365.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DVY79.2e-1364.18Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TVM11.2e-1261.76Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
TYK27665.11.67e-3596.88uncharacterized protein E5676_scaffold93G00290 [Cucumis melo var. makuwa][more]
KAA0042304.11.07e-2594.34uncharacterized protein E6C27_scaffold824G001010 [Cucumis melo var. makuwa][more]
KAA0054080.14.93e-1965.67hypothetical protein E6C27_scaffold1371G00020 [Cucumis melo var. makuwa][more]
TYK27664.11.40e-1864.18uncharacterized protein E5676_scaffold93G00280 [Cucumis melo var. makuwa][more]
KAA0047014.12.38e-1861.76hypothetical protein E6C27_scaffold230G002160 [Cucumis melo var. makuwa] >TYK047... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0008445.1IVF0008445.1mRNA