IVF0007882 (gene) Melon (IVF77) v1

Overview


Name	IVF0007882
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RT_RNaseH domain-containing protein
Location	chr09: 12325636 .. 12326633 (+)
RNA-Seq Expression	IVF0007882
Synteny	IVF0007882

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTCTTATGTGAAATTCTTGAAGGATATCTTGGCGAAGAAAAGTAGGTTAAATGATTTTCAAACGGTAGCTCTAATGCAAGAAACAAGTGACGTCTTCAGGAATGGGGTACCCAGGAAGATGACAGATCCTAGAAGCTTTATGATACTATGCTCAATAGGCTGGATGGATCTGGGTTGCGTACTATATGACCTTGAAGCAAGTATCAATTTGATGCCTCTTTATATCTTCAAGAAATTAGAGATGGGGGAGGTTCAACCCACACACATGAGACTTCAATTTGCTGATAGATCCATCACAAAGCCTAAAGACGCGATTGAAGACATTTTGGCGAAGGTGGACAAATTTCTATTTCTCGCAGACTTCGTCATTCTAAATTATGAAGCTAATTAGGAGGTTCCTATCATTTTAGGGCGGCCATTTCTTTCATCTGGTCGTGTCCACCAGGGGGAGTTAACAATGTGATTTATTAATGAAGAAGTCAAGTTTAACGTTGTTAACACGATAAAATTTCTCATGGATGATGAAAACTACAACGTACTATATAGAATCCCTTGGATGGGATTATTGCAAGGAAGAAGTGTTTGTCGAACTGTTTAGCCCTGAAGAATTCTTTGAAGAAGAAGACTCCGATTATATATTGGAAGAAGTAAACGTTGTATATGGCGCAAGGAAGTTCGAACCTTTGGATCTGCAAACCAAAGGCAAAAAGAAGATTAAGCCATTAATTAAAAAACCACGAGAATTAGAGCTCAAGTCGTTGCCCAACCACCTGAAGTATGCATACTTGGGGAGAATGAAACTCGTCTTGTCATTATCTCCGCCCAATTGAATGTCGAGAAGAGAAGGCATTTTGAGAGTGCTAAAATACCACAAGAAGGAGATAAGCTGGACCATGGCGGACATTCAAGGAATAAGCCCATCCTATTGCATGCAAAAAAAAATCAAGTTGGAAGAGGGTTATAAGGGCACTATTCAGTTTCAGTGGCGATTGA

mRNA sequence

ATGCCTTCTTATGTGAAATTCTTGAAGGATATCTTGGCGAAGAAAAGTAGGTTAAATGATTTTCAAACGGTAGCTCTAATGCAAGAAACAAGTGACGTCTTCAGGAATGGGGTACCCAGGAAGATGACAGATCCTAGAAGCTTTATGATACTATGCTCAATAGGCTGGATGGATCTGGGTTGCGTACTATATGACCTTGAAGCAAGTATCAATTTGATGCCTCTTTATATCTTCAAGAAATTAGAGATGGGGGAGGTTCAACCCACACACATGAGACTTCAATTTGCTGATAGATCCATCACAAAGCCTAAAGACGCGATTGAAGACATTTTGGCGAAGGAAGAAGTGTTTGTCGAACTGTTTAGCCCTGAAGAATTCTTTGAAGAAGAAGACTCCGATTATATATTGGAAGAAGTAAACGTTGTATATGGCGCAAGGAAGTTCGAACCTTTGGATCTGCAAACCAAAGGCAAAAAGAAGATTAAGCCATTAATTAAAAAACCACGAGAATTAGAGCTCAAGTCGTTGCCCAACCACCTGAAGTATGCATACTTGGGGAGAATGAAACTCGTCTTTTGGAAGAGGGTTATAAGGGCACTATTCAGTTTCAGTGGCGATTGA

Coding sequence (CDS)

ATGCCTTCTTATGTGAAATTCTTGAAGGATATCTTGGCGAAGAAAAGTAGGTTAAATGATTTTCAAACGGTAGCTCTAATGCAAGAAACAAGTGACGTCTTCAGGAATGGGGTACCCAGGAAGATGACAGATCCTAGAAGCTTTATGATACTATGCTCAATAGGCTGGATGGATCTGGGTTGCGTACTATATGACCTTGAAGCAAGTATCAATTTGATGCCTCTTTATATCTTCAAGAAATTAGAGATGGGGGAGGTTCAACCCACACACATGAGACTTCAATTTGCTGATAGATCCATCACAAAGCCTAAAGACGCGATTGAAGACATTTTGGCGAAGGAAGAAGTGTTTGTCGAACTGTTTAGCCCTGAAGAATTCTTTGAAGAAGAAGACTCCGATTATATATTGGAAGAAGTAAACGTTGTATATGGCGCAAGGAAGTTCGAACCTTTGGATCTGCAAACCAAAGGCAAAAAGAAGATTAAGCCATTAATTAAAAAACCACGAGAATTAGAGCTCAAGTCGTTGCCCAACCACCTGAAGTATGCATACTTGGGGAGAATGAAACTCGTCTTTTGGAAGAGGGTTATAAGGGCACTATTCAGTTTCAGTGGCGATTGA

Protein sequence

MPSYVKFLKDILAKKSRLNDFQTVALMQETSDVFRNGVPRKMTDPRSFMILCSIGWMDLGCVLYDLEASINLMPLYIFKKLEMGEVQPTHMRLQFADRSITKPKDAIEDILAKEEVFVELFSPEEFFEEEDSDYILEEVNVVYGARKFEPLDLQTKGKKKIKPLIKKPRELELKSLPNHLKYAYLGRMKLVFWKRVIRALFSFSGD

Homology

[Close]

BLAST of IVF0007882 vs. ExPASy TrEMBL
Match: A0A5A7V2G5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001960 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 3.2e-57
Identity = 115/120 (95.83%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MPSYVKFLKDILAKKSRLNDFQTVALMQETSDVFRNGVPRKMTDPRSFMILCSIGWMDLG 60
           MPSYVKFLKDILAKKSRLNDFQTVALMQETSDVFRNGVPRKMTDPRSFMILCSIGWMDLG
Sbjct: 97  MPSYVKFLKDILAKKSRLNDFQTVALMQETSDVFRNGVPRKMTDPRSFMILCSIGWMDLG 156

Query: 61  CVLYDLEASINLMPLYIFKKLEMGEVQPTHMRLQFADRSITKPKDAIEDILAKEEVFVEL 120
           CVLYDLEASINLMPLYIFKKLEMGEVQPTHMRLQFADRSITKPKDAIEDILAK + F+ L
Sbjct: 157 CVLYDLEASINLMPLYIFKKLEMGEVQPTHMRLQFADRSITKPKDAIEDILAKVDKFLFL 216

[Close]

BLAST of IVF0007882 vs. ExPASy TrEMBL
Match: A0A1S4E2V6 (uncharacterized protein LOC107991723 OS=Cucumis melo OX=3656 GN=LOC107991723 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 6.0e-56
Identity = 113/120 (94.17%), Postives = 115/120 (95.83%), Query Frame = 0


Query: 1   MPSYVKFLKDILAKKSRLNDFQTVALMQETSDVFRNGVPRKMTDPRSFMILCSIGWMDLG 60
           MPSYVKFLKDILAKKSRLNDFQTVALMQETSDVFRNGVPRKMTDPRSFMILCSIGWMDLG
Sbjct: 56  MPSYVKFLKDILAKKSRLNDFQTVALMQETSDVFRNGVPRKMTDPRSFMILCSIGWMDLG 115

Query: 61  CVLYDLEASINLMPLYIFKKLEMGEVQPTHMRLQFADRSITKPKDAIEDILAKEEVFVEL 120
           CVLYDL ASINLMPLYIFKKLEMGEVQPTHMRLQFADRSITKPKD IEDILAK + F+ L
Sbjct: 116 CVLYDLGASINLMPLYIFKKLEMGEVQPTHMRLQFADRSITKPKDTIEDILAKVDKFLFL 175

[Close]

BLAST of IVF0007882 vs. ExPASy TrEMBL
Match: A0A5D3BM69 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold316G00120 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.8e-53
Identity = 115/182 (63.19%), Postives = 136/182 (74.73%), Query Frame = 0


Query: 5   VKFLKDILAKKSRLNDFQTVALMQETSDVFRNGVPRKMTDPRSFMILCSIGWMDLGCVLY 64
           VKFLKDIL KK ++NDF+ VAL Q T+++F+NGVP+KMTDP SF I  SIG +DLG  L 
Sbjct: 13  VKFLKDILVKKRKINDFKNVALTQATNNIFKNGVPKKMTDPGSFTIPYSIGILDLGRALC 72

Query: 65  DLEASINLMPLYIFKKLEMGEVQPTHMRLQFADRSITKPKDAIEDILAKEEVFVELFSPE 124
           +L A++NL+PL IFKKL++GEVQPTHMRLQ  D                EE + ELFS E
Sbjct: 73  ELRATMNLLPLSIFKKLKIGEVQPTHMRLQHTD--------------LLEEAYYELFSTE 132

Query: 125 EFFEEEDSDYILEEVNVVYGARKFEPLDLQTKGKKKIKPLIKKPRELELKSLPNHLKYAY 184
           EF EE++ DY LEEVN  +G RKFEPLDLQTK +KKIKP IK+P ELELK LPNHLKYAY
Sbjct: 133 EFLEEDEPDYKLEEVNTFFGKRKFEPLDLQTKDEKKIKPSIKEPLELELKPLPNHLKYAY 180

Query: 185 LG 187
           LG
Sbjct: 193 LG 180

[Close]

BLAST of IVF0007882 vs. ExPASy TrEMBL
Match: A0A5A7UF79 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00260 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.1e-44
Identity = 102/172 (59.30%), Postives = 122/172 (70.93%), Query Frame = 0


Query: 30  TSDVFRNGVPRKMTDPRSFMILCSIGWMDLGCVLYDLEASINLMPLYIFKKLEMGEVQPT 89
           TSD+F+NG+P KMT+P SF + CSIG MDLG  L +L  SINLM L IFKKLE+ EVQPT
Sbjct: 70  TSDIFKNGMPEKMTNPSSFTVPCSIGEMDLGRALCNLRVSINLMLLSIFKKLEIREVQPT 129

Query: 90  HMRLQFADRSITKPKDAIEDI----------------LAKEEVFVELFSPEEFFEEEDSD 149
           H+RL FAD+ I KP+D I+D                   ++E + ELFS EEFFEE+D  
Sbjct: 130 HIRLYFADKFIAKPEDKIKDFPTDDENCNVIEFLGWNYFEKEAYQELFSTEEFFEEDDPS 189

Query: 150 YILEEVNVVYGARKFEPLDLQTKGKKKIKPLIKKPRELELKSLPNHLKYAYL 186
           YIL+EVNVV   +KFE LDLQ KG+KK KP I++P ELELKSLPNHLKY YL
Sbjct: 190 YILKEVNVVSSEKKFESLDLQIKGEKKTKPSIEEPPELELKSLPNHLKYVYL 241

[Close]

BLAST of IVF0007882 vs. ExPASy TrEMBL
Match: A0A5A7T4Y2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001390 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 2.6e-43
Identity = 107/181 (59.12%), Postives = 126/181 (69.61%), Query Frame = 0


Query: 1   MPSYVKFLKDILAKKSRLNDFQTVALMQETSDVFRNGVPRKMTDPRSFMILCSIGWMDLG 60
           M SYVKFL DILAKK R+ND +T+AL Q T D+F+NGV  KM DP SF+I  SIG MDLG
Sbjct: 29  MSSYVKFLTDILAKKIRINDRETMALTQATRDIFKNGVLEKMIDPNSFLIPYSIGGMDLG 88

Query: 61  CVLYDLEASINLMPLYIFKKLEMGEVQPTHMRLQFADRSITKPKDAIEDILAKEEVFVEL 120
             L DL+ASIN M L IF KLE+ E  PT       D       +++     +EEV+ EL
Sbjct: 89  RALCDLKASINFMSLSIFMKLEIREF-PT-------DDETYSAIESLRWDYCEEEVYHEL 148

Query: 121 FSPEEFFEEEDSDYILEEVNVVYGARKFEPLDLQTKGKKKIKPLIKKPRELELKSLPNHL 180
           F+ EEFFEEED  YIL+EVN+V G R FE LDLQTKGKKK KP I++P +LELK LPNHL
Sbjct: 149 FNTEEFFEEEDLSYILKEVNIVSGERNFESLDLQTKGKKKTKPSIEEPPKLELKHLPNHL 201

Query: 181 K 182
           K
Sbjct: 209 K 201

[Close]

BLAST of IVF0007882 vs. NCBI nr
Match: KAA0062402.1 (uncharacterized protein E6C27_scaffold154G001950 [Cucumis melo var. makuwa] >TYK26579.1 uncharacterized protein E5676_scaffold313G001960 [Cucumis melo var. makuwa])

HSP 1 Score: 230 bits (587), Expect = 5.69e-73
Identity = 114/118 (96.61%), Postives = 116/118 (98.31%), Query Frame = 0


Query: 1   MPSYVKFLKDILAKKSRLNDFQTVALMQETSDVFRNGVPRKMTDPRSFMILCSIGWMDLG 60
           MPSYVKFLKDILAKKSRLNDFQTVALMQETSDVFRNGVPRKMTDPRSFMILCSIGWMDLG
Sbjct: 97  MPSYVKFLKDILAKKSRLNDFQTVALMQETSDVFRNGVPRKMTDPRSFMILCSIGWMDLG 156

Query: 61  CVLYDLEASINLMPLYIFKKLEMGEVQPTHMRLQFADRSITKPKDAIEDILAKEEVFV 118
           CVLYDLEASINLMPLYIFKKLEMGEVQPTHMRLQFADRSITKPKDAIEDILAK + F+
Sbjct: 157 CVLYDLEASINLMPLYIFKKLEMGEVQPTHMRLQFADRSITKPKDAIEDILAKVDKFL 214

[Close]

BLAST of IVF0007882 vs. NCBI nr
Match: XP_016902557.1 (PREDICTED: uncharacterized protein LOC107991723 [Cucumis melo])

HSP 1 Score: 226 bits (576), Expect = 6.95e-72
Identity = 112/118 (94.92%), Postives = 114/118 (96.61%), Query Frame = 0


Query: 1   MPSYVKFLKDILAKKSRLNDFQTVALMQETSDVFRNGVPRKMTDPRSFMILCSIGWMDLG 60
           MPSYVKFLKDILAKKSRLNDFQTVALMQETSDVFRNGVPRKMTDPRSFMILCSIGWMDLG
Sbjct: 56  MPSYVKFLKDILAKKSRLNDFQTVALMQETSDVFRNGVPRKMTDPRSFMILCSIGWMDLG 115

Query: 61  CVLYDLEASINLMPLYIFKKLEMGEVQPTHMRLQFADRSITKPKDAIEDILAKEEVFV 118
           CVLYDL ASINLMPLYIFKKLEMGEVQPTHMRLQFADRSITKPKD IEDILAK + F+
Sbjct: 116 CVLYDLGASINLMPLYIFKKLEMGEVQPTHMRLQFADRSITKPKDTIEDILAKVDKFL 173

[Close]

BLAST of IVF0007882 vs. NCBI nr
Match: TYJ99425.1 (uncharacterized protein E5676_scaffold316G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 217 bits (552), Expect = 4.65e-66
Identity = 115/182 (63.19%), Postives = 136/182 (74.73%), Query Frame = 0


Query: 5   VKFLKDILAKKSRLNDFQTVALMQETSDVFRNGVPRKMTDPRSFMILCSIGWMDLGCVLY 64
           VKFLKDIL KK ++NDF+ VAL Q T+++F+NGVP+KMTDP SF I  SIG +DLG  L 
Sbjct: 13  VKFLKDILVKKRKINDFKNVALTQATNNIFKNGVPKKMTDPGSFTIPYSIGILDLGRALC 72

Query: 65  DLEASINLMPLYIFKKLEMGEVQPTHMRLQFADRSITKPKDAIEDILAKEEVFVELFSPE 124
           +L A++NL+PL IFKKL++GEVQPTHMRLQ  D                EE + ELFS E
Sbjct: 73  ELRATMNLLPLSIFKKLKIGEVQPTHMRLQHTD--------------LLEEAYYELFSTE 132

Query: 125 EFFEEEDSDYILEEVNVVYGARKFEPLDLQTKGKKKIKPLIKKPRELELKSLPNHLKYAY 184
           EF EE++ DY LEEVN  +G RKFEPLDLQTK +KKIKP IK+P ELELK LPNHLKYAY
Sbjct: 133 EFLEEDEPDYKLEEVNTFFGKRKFEPLDLQTKDEKKIKPSIKEPLELELKPLPNHLKYAY 180

Query: 185 LG 186
           LG
Sbjct: 193 LG 180

[Close]

BLAST of IVF0007882 vs. NCBI nr
Match: KAA0052866.1 (uncharacterized protein E6C27_scaffold33G00230 [Cucumis melo var. makuwa] >TYK04359.1 uncharacterized protein E5676_scaffold675G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 187 bits (476), Expect = 8.88e-55
Identity = 102/172 (59.30%), Postives = 122/172 (70.93%), Query Frame = 0


Query: 30  TSDVFRNGVPRKMTDPRSFMILCSIGWMDLGCVLYDLEASINLMPLYIFKKLEMGEVQPT 89
           TSD+F+NG+P KMT+P SF + CSIG MDLG  L +L  SINLM L IFKKLE+ EVQPT
Sbjct: 70  TSDIFKNGMPEKMTNPSSFTVPCSIGEMDLGRALCNLRVSINLMLLSIFKKLEIREVQPT 129

Query: 90  HMRLQFADRSITKPKDAIEDILA----------------KEEVFVELFSPEEFFEEEDSD 149
           H+RL FAD+ I KP+D I+D                   ++E + ELFS EEFFEE+D  
Sbjct: 130 HIRLYFADKFIAKPEDKIKDFPTDDENCNVIEFLGWNYFEKEAYQELFSTEEFFEEDDPS 189

Query: 150 YILEEVNVVYGARKFEPLDLQTKGKKKIKPLIKKPRELELKSLPNHLKYAYL 185
           YIL+EVNVV   +KFE LDLQ KG+KK KP I++P ELELKSLPNHLKY YL
Sbjct: 190 YILKEVNVVSSEKKFESLDLQIKGEKKTKPSIEEPPELELKSLPNHLKYVYL 241

[Close]

BLAST of IVF0007882 vs. NCBI nr
Match: KAA0038053.1 (uncharacterized protein E6C27_scaffold36G002560 [Cucumis melo var. makuwa] >TYK20551.1 uncharacterized protein E5676_scaffold237G001390 [Cucumis melo var. makuwa])

HSP 1 Score: 183 bits (465), Expect = 5.69e-54
Identity = 108/181 (59.67%), Postives = 125/181 (69.06%), Query Frame = 0


Query: 1   MPSYVKFLKDILAKKSRLNDFQTVALMQETSDVFRNGVPRKMTDPRSFMILCSIGWMDLG 60
           M SYVKFL DILAKK R+ND +T+AL Q T D+F+NGV  KM DP SF+I  SIG MDLG
Sbjct: 29  MSSYVKFLTDILAKKIRINDRETMALTQATRDIFKNGVLEKMIDPNSFLIPYSIGGMDLG 88

Query: 61  CVLYDLEASINLMPLYIFKKLEMGEVQPTHMRLQFADRSITKPKDAIEDILAKEEVFVEL 120
             L DL+ASIN M L IF KLE+ E  PT      A  S+            +EEV+ EL
Sbjct: 89  RALCDLKASINFMSLSIFMKLEIREF-PTDDETYSAIESLRWD-------YCEEEVYHEL 148

Query: 121 FSPEEFFEEEDSDYILEEVNVVYGARKFEPLDLQTKGKKKIKPLIKKPRELELKSLPNHL 180
           F+ EEFFEEED  YIL+EVN+V G R FE LDLQTKGKKK KP I++P +LELK LPNHL
Sbjct: 149 FNTEEFFEEEDLSYILKEVNIVSGERNFESLDLQTKGKKKTKPSIEEPPKLELKHLPNHL 201

The following BLAST results are available for this feature:

BLAST of IVF0007882 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0007882 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V2G5	3.2e-57	95.83	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4E2V6	6.0e-56	94.17	uncharacterized protein LOC107991723 OS=Cucumis melo OX=3656 GN=LOC107991723 PE=...	[more]
A0A5D3BM69	2.8e-53	63.19	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UF79	1.1e-44	59.30	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T4Y2	2.6e-43	59.12	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0007882 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062402.1	5.69e-73	96.61	uncharacterized protein E6C27_scaffold154G001950 [Cucumis melo var. makuwa] >TYK...	[more]
XP_016902557.1	6.95e-72	94.92	PREDICTED: uncharacterized protein LOC107991723 [Cucumis melo]	[more]
TYJ99425.1	4.65e-66	63.19	uncharacterized protein E5676_scaffold316G00120 [Cucumis melo var. makuwa]	[more]
KAA0052866.1	8.88e-55	59.30	uncharacterized protein E6C27_scaffold33G00230 [Cucumis melo var. makuwa] >TYK04...	[more]
KAA0038053.1	5.69e-54	59.67	uncharacterized protein E6C27_scaffold36G002560 [Cucumis melo var. makuwa] >TYK2...	[more]

BLAST of IVF0007882 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33067:SF23	SUBFAMILY NOT NAMED	coord: 3..113
None	No IPR available	PANTHER	PTHR33067	FAMILY NOT NAMED	coord: 3..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0007882.2	IVF0007882.2	mRNA